ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA63_HUMAN (Q3LI67) Keratin-associated protein 6-3 25 3.8
2MT_NEUCR (P02807) Metallothionein (MT) 29 7.6
3SOCS3_CHICK (Q90X67) Suppressor of cytokine signaling 3 (SOCS-3) 29 7.6
4WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 28 9.9

>KRA63_HUMAN (Q3LI67) Keratin-associated protein 6-3|
          Length = 103

 Score = 25.4 bits (54), Expect(2) = 3.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 102 GAGGLNCETFSFCHCG 55
           G GGL C   SFC CG
Sbjct: 50  GYGGLGCGYGSFCGCG 65



 Score = 23.5 bits (49), Expect(2) = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 229 GFGFGFCSYGVSSYRVL 179
           G G+G C YG   YR L
Sbjct: 24  GCGYGGCGYGCCGYRGL 40



to top

>MT_NEUCR (P02807) Metallothionein (MT)|
          Length = 25

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 96 GGLNCETFSFCHCGVHCSTVNCASR 22
          G   C   S C+CG  CS  NC S+
Sbjct: 1  GDCGCSGASSCNCGSGCSCSNCGSK 25



to top

>SOCS3_CHICK (Q90X67) Suppressor of cytokine signaling 3 (SOCS-3)|
          Length = 209

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +1

Query: 73  EGFTIQTTSPSDQNQPNAQFSCIYTLTHHTMG*VYL----EPGNYLHRKNKTQNQS-RKP 237
           EG +    S    +QP  +F C+  L HH M         +PG  LH K      S  + 
Sbjct: 98  EGGSFSLQSDPRSSQPVPRFDCVLKLVHHYMPPTPCAGPKQPGGALHPKRTYYIYSGGEK 157

Query: 238 VPVLPTRP 261
           +P++ +RP
Sbjct: 158 IPLVLSRP 165



to top

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 235  PVPVLPTRPDPYVQHI*SWTCRAATP 312
            P P LP RP+P   H+      AATP
Sbjct: 994  PQPALPVRPEPLQPHLPEQAAPAATP 1019


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,379,466
Number of Sequences: 219361
Number of extensions: 1221601
Number of successful extensions: 3244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top