ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30g12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 248 tgcctactcggccagatccctatgtacaacatatctgaagttggacttgtagggcagcca 307 ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 18817190 tgcctactcggccaggtccctatgtacaacgtatctgaaggaggacttgtagggcagcca 18817131 Query: 308 ctccacgcacttgtcgatccttctcctgag 337 ||| ||||||||||||||||| |||||||| Sbjct: 18817130 ctcgacgcacttgtcgatcctcctcctgag 18817101 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Minus Query: 374 ctccgaggtggtctcgcacaccagctccacgaggtggcgcagctcgagcgccgcgtcctt 433 ||||||| || ||||||||||||||||||| | || |||||||| |||||||||||||| Sbjct: 18817073 ctccgagatgctctcgcacaccagctccaccacatgccgcagctccagcgccgcgtcctt 18817014 Query: 434 ggcatagtagtggagcaccttgggcagca 462 ||| |||||||| |||||||||||||||| Sbjct: 18817013 ggcgtagtagtgcagcaccttgggcagca 18816985
>dbj|AK102021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J10, full insert sequence Length = 2426 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 248 tgcctactcggccagatccctatgtacaacatatctgaagttggacttgtagggcagcca 307 ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 2184 tgcctactcggccaggtccctatgtacaacgtatctgaaggaggacttgtagggcagcca 2125 Query: 308 ctccacgcacttgtcgatccttctcctgag 337 ||| ||||||||||||||||| |||||||| Sbjct: 2124 ctcgacgcacttgtcgatcctcctcctgag 2095 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Minus Query: 374 ctccgaggtggtctcgcacaccagctccacgaggtggcgcagctcgagcgccgcgtcctt 433 ||||||| || ||||||||||||||||||| | || |||||||| |||||||||||||| Sbjct: 2067 ctccgagatgctctcgcacaccagctccaccacatgccgcagctccagcgccgcgtcctt 2008 Query: 434 ggcatagtagtggagcaccttgggcagca 462 ||| |||||||| |||||||||||||||| Sbjct: 2007 ggcgtagtagtgcagcaccttgggcagca 1979
>gb|AC097382.3| Homo sapiens BAC clone RP11-367J11 from 4, complete sequence Length = 210515 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 143 acacacttacacaccacaccatg 165 ||||||||||||||||||||||| Sbjct: 145595 acacacttacacaccacaccatg 145573
>gb|AC091353.6| Rattus norvegicus 4 BAC CH230-1B20 (Children's Hospital Oakland Research Institute) complete sequence Length = 242904 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 aacaaaacccaaaaccaaagcc 229 |||||||||||||||||||||| Sbjct: 16262 aacaaaacccaaaaccaaagcc 16283
>gb|AC095825.6| Rattus norvegicus 4 BAC CH230-9J6 (Children's Hospital Oakland Research Institute) complete sequence Length = 234084 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 aacaaaacccaaaaccaaagcc 229 |||||||||||||||||||||| Sbjct: 121996 aacaaaacccaaaaccaaagcc 121975
>ref|NM_114966.2| Arabidopsis thaliana STY1 (STYLISH 1) AT3G51060 (STY1) mRNA, complete cds Length = 1649 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaag 227 ||||||||||||||||||||| Sbjct: 201 gaacaaaacccaaaaccaaag 181
>gb|AC147895.2| Xenopus tropicalis clone CH216-3D8, complete sequence Length = 212769 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tgtatttacacacttacacac 156 ||||||||||||||||||||| Sbjct: 38024 tgtatttacacacttacacac 38044
>ref|XM_851552.1| PREDICTED: Canis familiaris similar to Farnesyl-diphosphate farnesyltransferase (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferase), transcript variant 4 (LOC477362), mRNA Length = 1512 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcacttgtcgatccttctcct 334 ||||||||||||||||||||| Sbjct: 449 gcacttgtcgatccttctcct 429
>ref|XM_851510.1| PREDICTED: Canis familiaris similar to Farnesyl-diphosphate farnesyltransferase (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferase), transcript variant 3 (LOC477362), mRNA Length = 1593 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcacttgtcgatccttctcct 334 ||||||||||||||||||||| Sbjct: 449 gcacttgtcgatccttctcct 429
>ref|XM_534557.2| PREDICTED: Canis familiaris similar to Farnesyl-diphosphate farnesyltransferase (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferase), transcript variant 1 (LOC477362), mRNA Length = 1689 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 gcacttgtcgatccttctcct 334 ||||||||||||||||||||| Sbjct: 449 gcacttgtcgatccttctcct 429
>gb|AC131742.2| Mus musculus BAC clone RP23-67I3 from chromosome 1, complete sequence Length = 196557 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 aagaacaaaacccaaaaccaa 225 ||||||||||||||||||||| Sbjct: 160570 aagaacaaaacccaaaaccaa 160590
>emb|CR450739.19| Zebrafish DNA sequence from clone DKEY-175B17 in linkage group 13, complete sequence Length = 180895 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 176329 ctgtatttacacacttacaca 176309
>emb|AL512366.12| Human DNA sequence from clone RP11-449O16 on chromosome 10 Contains the gene for apobec-1 complementation factor (ACF) (ASP) and the 3' end of a variant of the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 175849 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 taagaacaaaacccaaaacca 224 ||||||||||||||||||||| Sbjct: 70902 taagaacaaaacccaaaacca 70882
>gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chromosome 10, complete sequence Length = 167069 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 taagaacaaaacccaaaacca 224 ||||||||||||||||||||| Sbjct: 153982 taagaacaaaacccaaaacca 153962
>emb|AL132980.3|ATF24M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12 Length = 129516 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaag 227 ||||||||||||||||||||| Sbjct: 23871 gaacaaaacccaaaaccaaag 23851
>gb|AC165292.2| Mus musculus BAC clone RP23-319D22 from chromosome 10, complete sequence Length = 192726 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 atttacacacttacacaccacacca 163 |||||||||| |||||||||||||| Sbjct: 32631 atttacacacatacacaccacacca 32655
>emb|CR932440.7| Zebrafish DNA sequence from clone CH211-247J17 in linkage group 13, complete sequence Length = 78212 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 78125 ctgtatttacacacttacaca 78105
>ref|XM_698442.1| PREDICTED: Danio rerio hypothetical protein LOC556261 (LOC556261), mRNA Length = 1057 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 989 ctgtatttacacacttacaca 969
>ref|XM_698072.1| PREDICTED: Danio rerio hypothetical protein LOC555685 (LOC555685), mRNA Length = 2086 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 2018 ctgtatttacacacttacaca 1998
>ref|XM_687334.1| PREDICTED: Danio rerio similar to ENSANGP00000027443 (LOC563971), mRNA Length = 2062 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 1994 ctgtatttacacacttacaca 1974
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 ggcagccactccacgcacttgtcga 324 |||||||||||| |||||||||||| Sbjct: 212019 ggcagccactccgcgcacttgtcga 212043
>emb|BX284621.6| Zebrafish DNA sequence from clone CH211-207N6, complete sequence Length = 217722 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 181275 ctgtatttacacacttacaca 181295
>emb|BX824145.1|CNS0A4O1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaag 227 ||||||||||||||||||||| Sbjct: 201 gaacaaaacccaaaaccaaag 181
>dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobulin heavy chains Length = 21013 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 tccttctcctgagcctgtgct 345 ||||||||||||||||||||| Sbjct: 4215 tccttctcctgagcctgtgct 4195
>gb|AC144800.3| Mus musculus BAC clone RP24-257N2 from chromosome 10, complete sequence Length = 170671 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 atttacacacttacacaccacacca 163 |||||||||| |||||||||||||| Sbjct: 93998 atttacacacatacacaccacacca 93974
>emb|AL935288.9| Zebrafish DNA sequence from clone CH211-250C4, complete sequence Length = 181644 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctgtatttacacacttacaca 155 ||||||||||||||||||||| Sbjct: 19555 ctgtatttacacacttacaca 19575
>ref|NM_207818.1| Eremothecium gossypii AAL077Cp (AAL077C), mRNA Length = 1086 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 ggcagccactccacgcacttgtcga 324 |||||||||||| |||||||||||| Sbjct: 590 ggcagccactccgcgcacttgtcga 566
>emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-417P24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tccttctcctgagcctgtgct 345 ||||||||||||||||||||| Sbjct: 45531 tccttctcctgagcctgtgct 45551
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 tccttctcctgagcctgtgct 345 ||||||||||||||||||||| Sbjct: 1047707 tccttctcctgagcctgtgct 1047687
>gb|U96414.1|HSU96414 Homo sapiens I gamma 3 gene, partial sequence Length = 846 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 tccttctcctgagcctgtgct 345 ||||||||||||||||||||| Sbjct: 323 tccttctcctgagcctgtgct 303
>gb|AC123793.5| Mus musculus BAC clone RP24-315L18 from chromosome 1, complete sequence Length = 206081 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 aagaacaaaacccaaaaccaa 225 ||||||||||||||||||||| Sbjct: 19435 aagaacaaaacccaaaaccaa 19455
>gb|AC117814.14| Mus musculus chromosome 15, clone RP24-572J18, complete sequence Length = 169092 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tgaccaaaaccaacccaatg 124 |||||||||||||||||||| Sbjct: 86819 tgaccaaaaccaacccaatg 86838
>ref|XM_360774.1| Magnaporthe grisea 70-15 hypothetical protein (MG03317.4) partial mRNA Length = 1341 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cctgtgctggagctgcgcca 357 |||||||||||||||||||| Sbjct: 690 cctgtgctggagctgcgcca 671
>gb|AC154316.3| Mus musculus BAC clone RP23-338D3 from chromosome 14, complete sequence Length = 210286 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaa 226 |||||||||||||||||||| Sbjct: 43449 gaacaaaacccaaaaccaaa 43430
>gb|AC004774.1| Homo sapiens BAC clone CTA-300E22 from 7, complete sequence Length = 161652 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 aggagggcctgcttcttcac 481 |||||||||||||||||||| Sbjct: 134438 aggagggcctgcttcttcac 134419
>gb|AC004593.1| Homo sapiens PAC clone RP5-964C11 from 7, complete sequence Length = 150221 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 aacaaaacccaaaaccaaag 227 |||||||||||||||||||| Sbjct: 75264 aacaaaacccaaaaccaaag 75283
>ref|XM_981590.1| PREDICTED: Mus musculus RIKEN cDNA 1700126L10 gene (1700126L10Rik), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caaaacccaaaaccaaagcc 229 |||||||||||||||||||| Sbjct: 137 caaaacccaaaaccaaagcc 156
>ref|XM_981829.1| PREDICTED: Mus musculus RIKEN cDNA 1700126L10 gene (1700126L10Rik), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caaaacccaaaaccaaagcc 229 |||||||||||||||||||| Sbjct: 137 caaaacccaaaaccaaagcc 156
>ref|XM_001005021.1| PREDICTED: Mus musculus RIKEN cDNA 1700126L10 gene (1700126L10Rik), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caaaacccaaaaccaaagcc 229 |||||||||||||||||||| Sbjct: 137 caaaacccaaaaccaaagcc 156
>gb|AC146225.2| Pan troglodytes BAC clone RP43-32E8 from 7, complete sequence Length = 171272 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aacaaaacccaaaaccaaag 227 |||||||||||||||||||| Sbjct: 39853 aacaaaacccaaaaccaaag 39834
>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence Length = 180794 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 atttacacacttacacacca 158 |||||||||||||||||||| Sbjct: 78747 atttacacacttacacacca 78728
>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23, complete sequence Length = 209342 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 acacacttacacaccacacc 162 |||||||||||||||||||| Sbjct: 142310 acacacttacacaccacacc 142329
>gb|AC091520.10| Mus musculus strain 129/SvJ clone mgs1-480e13, complete sequence Length = 105813 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 atttacacacttacacacca 158 |||||||||||||||||||| Sbjct: 4906 atttacacacttacacacca 4887
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ggtggcgcagctcgagcgcc 425 |||||||||||||||||||| Sbjct: 3444065 ggtggcgcagctcgagcgcc 3444046
>emb|CR388029.10| Zebrafish DNA sequence from clone CH211-214O13 in linkage group 14, complete sequence Length = 210704 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tacacacttacacaccacac 161 |||||||||||||||||||| Sbjct: 124688 tacacacttacacaccacac 124707
>emb|CR847859.13| Zebrafish DNA sequence from clone DKEYP-2F4 in linkage group 14, complete sequence Length = 124837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tacacacttacacaccacac 161 |||||||||||||||||||| Sbjct: 106328 tacacacttacacaccacac 106309
>emb|AL806526.4| Mouse DNA sequence from clone RP23-123F24 on chromosome 11 Contains a novel gene and a ribosomal protein S20 (Rps20) pseudogene, complete sequence Length = 128168 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaa 226 |||||||||||||||||||| Sbjct: 59902 gaacaaaacccaaaaccaaa 59883
>gb|AC154701.2| Mus musculus BAC clone RP24-344N20 from chromosome 14, complete sequence Length = 169056 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gaacaaaacccaaaaccaaa 226 |||||||||||||||||||| Sbjct: 168220 gaacaaaacccaaaaccaaa 168201
>emb|CR385878.1| Gallus gallus finished cDNA, clone ChEST210h13 Length = 2042 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 agtgcacaccacaatgacaa 67 |||||||||||||||||||| Sbjct: 1082 agtgcacaccacaatgacaa 1063
>dbj|AK032073.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330572A04 product:similar to DJ453C12.4.5 (NOVEL PROTEIN (SIMILAR TO DROSOPHILA CG11753), ISOFORM 5) (FRAGMENT) [Homo sapiens], full insert sequence Length = 1615 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 caaaacccaaaaccaaagcc 229 |||||||||||||||||||| Sbjct: 1482 caaaacccaaaaccaaagcc 1463
>gb|AF307337.1|AF307337 Homo sapiens ALPP, ALPPL2, ALPI, XCE, CHRND, and CHRNG genes, complete sequence Length = 210301 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 caatgacaaaatgagaaggt 78 |||||||||||||||||||| Sbjct: 73593 caatgacaaaatgagaaggt 73574
>ref|XM_391894.2| PREDICTED: Apis mellifera similar to ENSANGP00000025395 (LOC408342), mRNA Length = 6129 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ttacaccgtaagaacaaaac 215 |||||||||||||||||||| Sbjct: 5107 ttacaccgtaagaacaaaac 5088
>gb|AC068134.5| Homo sapiens BAC clone RP11-762N20 from 2, complete sequence Length = 181068 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 caatgacaaaatgagaaggt 78 |||||||||||||||||||| Sbjct: 120904 caatgacaaaatgagaaggt 120885
>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence Length = 39456 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 agaacaaaacccaaaaccaaagcc 229 |||||||||||||||| ||||||| Sbjct: 33121 agaacaaaacccaaaagcaaagcc 33098
>ref|XM_221724.2| PREDICTED: Rattus norvegicus nuclear receptor interacting protein 1 (predicted) (Nrip1_predicted), mRNA Length = 6936 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 ctgaccaaaaccaacccaat 123 |||||||||||||||||||| Sbjct: 3248 ctgaccaaaaccaacccaat 3267
>gb|AC004099.1|AC004099 Homo sapiens chromosome 17, clone HCIT421K24, complete sequence Length = 136222 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 taagaacaaaacccaaaacc 223 |||||||||||||||||||| Sbjct: 49453 taagaacaaaacccaaaacc 49472
>gb|AY449461.1| Oikopleura dioica clone BACOIKO005 4xj24, complete sequence Length = 95978 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aaaatgagaaggtttcacaa 85 |||||||||||||||||||| Sbjct: 31928 aaaatgagaaggtttcacaa 31909
>gb|AC110174.10| Mus musculus chromosome 3, clone RP23-293K21, complete sequence Length = 253469 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 tacacacttacacaccacaccatg 165 ||||||| |||||||||||||||| Sbjct: 115382 tacacacatacacaccacaccatg 115359
>dbj|AP006202.1| Homo sapiens genomic DNA, chromosome 7, clone:CTB-142L17, complete sequence Length = 78092 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 aacaaaacccaaaaccaaag 227 |||||||||||||||||||| Sbjct: 47109 aacaaaacccaaaaccaaag 47128
>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9, complete sequence Length = 192039 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 aagaacaaaacccaaaacca 224 |||||||||||||||||||| Sbjct: 116230 aagaacaaaacccaaaacca 116211
>gb|AC125371.4| Mus musculus BAC clone RP24-401O6 from 16, complete sequence Length = 194685 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ttacacacttacacaccacaccat 164 |||||||| ||||||||||||||| Sbjct: 180202 ttacacacatacacaccacaccat 180225
>gb|AC134862.4| Mus musculus BAC clone RP24-91P2 from 5, complete sequence Length = 205726 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ttacacacttacacaccaca 160 |||||||||||||||||||| Sbjct: 134474 ttacacacttacacaccaca 134493
>gb|AC147718.1| Gallus gallus BAC clone CH261-18A20 from chromosome unknown, complete sequence Length = 185989 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 agtgcacaccacaatgacaa 67 |||||||||||||||||||| Sbjct: 48702 agtgcacaccacaatgacaa 48721
>gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complete sequence Length = 195188 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ttacacacttacacaccacaccat 164 |||||||| ||||||||||||||| Sbjct: 8494 ttacacacatacacaccacaccat 8517
>gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, complete sequence Length = 149611 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 acaaaacccaaaaccaaagc 228 |||||||||||||||||||| Sbjct: 52107 acaaaacccaaaaccaaagc 52126
>emb|AL591478.19| Mouse DNA sequence from clone RP23-140D14 on chromosome 2, complete sequence Length = 236979 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 caaaacccaaaaccaaagcc 229 |||||||||||||||||||| Sbjct: 27402 caaaacccaaaaccaaagcc 27383
>emb|AL672269.15| Mouse DNA sequence from clone RP23-57F11 on chromosome 11, complete sequence Length = 169954 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aacaaaacccaaaaccaaag 227 |||||||||||||||||||| Sbjct: 92381 aacaaaacccaaaaccaaag 92362
>emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on chromosome 15, complete sequence Length = 161985 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tccttctcctgagcctgtgc 344 |||||||||||||||||||| Sbjct: 93485 tccttctcctgagcctgtgc 93466 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,427,570 Number of Sequences: 3902068 Number of extensions: 4427570 Number of successful extensions: 98811 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98624 Number of HSP's gapped (non-prelim): 187 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
