>YK82_YEAST (P36170) Hypothetical protein YKR102W precursor|
          Length = 1169

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 94  FDDAHTQQHCTVPVHHSSSRPCICMAVCTYVCI*PCTVLYCT*LCIQLDTNAVLTASTTS 273
           FDD  TQ HC+VP     +R C+  A  ++     CT       C + ++ + +T   TS
Sbjct: 276 FDDNATQAHCSVPNPAEHARTCVSSATSSWSSSEVCTE------CTETESTSYVTPYVTS 329

Query: 274 N 276
           +
Sbjct: 330 S 330

>SYR_HALSA (Q9HHN2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 631

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = -1

Query: 488 AALRAATQEV--EKRTEELAARLERVSDAVNGVFRAALRLRNAELGSFIAAGLAGNGKAP 315
           A +RAAT +   +   ++ A  LE ++D   G F + +        SF  A  AG     
Sbjct: 11  AGIRAATSDAGYDYEVDQSAIELEDITDEEKGEFSSPI--------SFSIAAAAG----- 57

Query: 314 RSGK*PFAVHQPPLLVVLAVSTAFVSNCIQSQVQYSTVQG 195
                      PP+ V  A++ A  SN + ++V+  TV+G
Sbjct: 58  ----------APPVDVAAAIADAHRSNGLPAEVEAVTVEG 87

>CLPB_RHIME (Q92MK7) Chaperone clpB|
          Length = 868

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -1

Query: 497 PDEAALRAATQEVEKRTEELAARLERVSDAVNGVFRAALRLR------NAELGSFIAAGL 336
           P +  L     ++ +  +ELA  +    DAV  V RA  R R      N  +GSFI  G 
Sbjct: 549 PVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPNRPIGSFIFLGP 608

Query: 335 AGNGK 321
            G GK
Sbjct: 609 TGVGK 613

>CCD39_HUMAN (Q9UFE4) Coiled-coil domain-containing protein 39|
          Length = 755

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 464 EVEKRTEELAARLERVSDAVNGVFRAALRL 375
           E+++   E+A+ LE+ SD  NG+F+A  +L
Sbjct: 184 EIQRLENEMASILEKKSDKENGIFKATQKL 213

>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +1

Query: 70  PHMRAPSIFDDAH-TQQHCT-VPVHHSSSR---PCICMAVCTYVCI*PC 201
           P   +P  +  AH   ++C  + V ++ SR    C+C+ VC YVC+  C
Sbjct: 24  PFCASPLCYCPAHPAPRNCLCMTVAYTGSRCLGACVCVCVCLYVCVHVC 72

>CLPC_MYCTU (P0A522) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 476 AATQEVEKRTEELAARLERVSDAVNGVFRAALRLR------NAELGSFIAAGLAGNGKAP 315
           A T  + +  EEL  R+    DAV  V +A  R R          GSFI AG +G GK  
Sbjct: 502 AETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561

Query: 314 RS 309
            S
Sbjct: 562 LS 563

>CLPC_MYCLE (P24428) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 476 AATQEVEKRTEELAARLERVSDAVNGVFRAALRLR------NAELGSFIAAGLAGNGKAP 315
           A T  + +  EEL  R+    DAV  V +A  R R          GSFI AG +G GK  
Sbjct: 502 AETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561

Query: 314 RS 309
            S
Sbjct: 562 LS 563

>CLPC_MYCBO (P0A523) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 476 AATQEVEKRTEELAARLERVSDAVNGVFRAALRLR------NAELGSFIAAGLAGNGKAP 315
           A T  + +  EEL  R+    DAV  V +A  R R          GSFI AG +G GK  
Sbjct: 502 AETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561

Query: 314 RS 309
            S
Sbjct: 562 LS 563

>COFG_HALMA (Q5UXN0) FO synthase subunit 1 (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
           subunit 1)
          Length = 343

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 201 YCTVLHLTLYTVGHERCTYC*YY---**RRLVNGERLLPTARRLAVAG 335
           YC  + L L T     CTYC YY       L++ E +  T RR A AG
Sbjct: 13  YCRNVFLPLTTACRYTCTYCTYYDPPGQAELMDREEIRETCRRGADAG 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,492,021
Number of Sequences: 219361
Number of extensions: 1267660
Number of successful extensions: 4320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4317
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)