ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, p... 92 1e-16
2gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, p... 92 1e-16
3gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome... 42 0.12
4gb|AC084443.1|AC084443 Caenorhabditis briggsae cosmid CB011L08, ... 42 0.12
5gb|AY107741.1| Zea mays PCO155874 mRNA sequence 38 1.9
6gb|AY372757.1| Cooperia oncophora GluCl beta mRNA, complete cds 36 7.5
7gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, com... 36 7.5
8emb|BX063773.1|CNS09LDD Single read from an extremity of a full-... 36 7.5
9emb|BX042162.1|CNS094P2 Single read from an extremity of a full-... 36 7.5
10emb|BX031376.1|CNS08WDG Single read from an extremity of a full-... 36 7.5
11emb|AJ851610.1| Gallus gallus mRNA for hypothetical protein, clo... 36 7.5
12emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signall... 36 7.5
13emb|CR352304.6| Zebrafish DNA sequence from clone CH211-192F24 i... 36 7.5
14ref|NM_001012797.1| Gallus gallus proteasome (prosome, macropain... 36 7.5
15gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, co... 36 7.5
16gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, co... 36 7.5
17gb|AC105764.1| Caenorhabditis briggsae cosmid CB026A10, complete... 36 7.5
18emb|CR386563.1| Gallus gallus finished cDNA, clone ChEST292a22 36 7.5
19gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete ... 36 7.5
20dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signal... 36 7.5
21gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, c... 36 7.5
22gb|AC135279.3| Homo sapiens 12 BAC RP11-114F3 (Roswell Park Canc... 36 7.5
23dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 36 7.5
24emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11... 36 7.5

>gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, partial cds
          Length = 1450

 Score = 91.7 bits (46), Expect = 1e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 1    aacgactatcagttcccttccagcaaaaatcgaactacaaaagcgctacaaaga 54
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1443 aacgactataagttcccttccagtaaaaatcgaactacaaaagcgctacaaaga 1390



to top

>gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, partial cds
          Length = 1472

 Score = 91.7 bits (46), Expect = 1e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 1    aacgactatcagttcccttccagcaaaaatcgaactacaaaagcgctacaaaga 54
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1435 aacgactataagttcccttccagtaaaaatcgaactacaaaagcgctacaaaga 1382



to top

>gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome 18, complete sequence
          Length = 191085

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tatcagttcccttccagcaaa 27
             |||||||||||||||||||||
Sbjct: 47742 tatcagttcccttccagcaaa 47722



to top

>gb|AC084443.1|AC084443 Caenorhabditis briggsae cosmid CB011L08, complete sequence
          Length = 75137

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    ttcccttccagcaaaaatcga 33
             |||||||||||||||||||||
Sbjct: 16324 ttcccttccagcaaaaatcga 16344



to top

>gb|AY107741.1| Zea mays PCO155874 mRNA sequence
          Length = 545

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 8   atcagttcccttccagcaa 26
           |||||||||||||||||||
Sbjct: 124 atcagttcccttccagcaa 106



to top

>gb|AY372757.1| Cooperia oncophora GluCl beta mRNA, complete cds
          Length = 1480

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 16   ccttccagcaaaaatcga 33
            ||||||||||||||||||
Sbjct: 1223 ccttccagcaaaaatcga 1240



to top

>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence
          Length = 188119

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      atcagttcccttccagca 25
              ||||||||||||||||||
Sbjct: 113614 atcagttcccttccagca 113631



to top

>emb|BX063773.1|CNS09LDD Single read from an extremity of a full-length cDNA clone made
          from Anopheles gambiae total adult females. 3-PRIME end
          of clone FK0AAC45DC02 of strain 6-9 of Anopheles
          gambiae (African malaria mosquito)
          Length = 1048

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 25 aaaaatcgaactacaaaa 42
          ||||||||||||||||||
Sbjct: 92 aaaaatcgaactacaaaa 75



to top

>emb|BX042162.1|CNS094P2 Single read from an extremity of a full-length cDNA clone made
          from Anopheles gambiae total adult females. 3-PRIME end
          of clone FK0AAC14AC11 of strain 6-9 of Anopheles
          gambiae (African malaria mosquito)
          Length = 572

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 25 aaaaatcgaactacaaaa 42
          ||||||||||||||||||
Sbjct: 88 aaaaatcgaactacaaaa 71



to top

>emb|BX031376.1|CNS08WDG Single read from an extremity of a full-length cDNA clone made
          from Anopheles gambiae total adult females. 3-PRIME end
          of clone FK0AAA46DB11 of strain 6-9 of Anopheles
          gambiae (African malaria mosquito)
          Length = 745

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 25 aaaaatcgaactacaaaa 42
          ||||||||||||||||||
Sbjct: 98 aaaaatcgaactacaaaa 81



to top

>emb|AJ851610.1| Gallus gallus mRNA for hypothetical protein, clone 11e7
          Length = 3142

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 9    tcagttcccttccagcaa 26
            ||||||||||||||||||
Sbjct: 2917 tcagttcccttccagcaa 2900



to top

>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 21     cagcaaaaatcgaactacaaaa 42
              ||||||||||||||| ||||||
Sbjct: 203248 cagcaaaaatcgaaccacaaaa 203227



to top

>emb|CR352304.6| Zebrafish DNA sequence from clone CH211-192F24 in linkage group 8,
            complete sequence
          Length = 19850

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 35   ctacaaaagcgctacaaa 52
            ||||||||||||||||||
Sbjct: 5748 ctacaaaagcgctacaaa 5731



to top

>ref|NM_001012797.1| Gallus gallus proteasome (prosome, macropain) 26S subunit,
            non-ATPase, 5 (PSMD5), mRNA
          Length = 3142

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 9    tcagttcccttccagcaa 26
            ||||||||||||||||||
Sbjct: 2917 tcagttcccttccagcaa 2900



to top

>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence
          Length = 165879

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    agttcccttccagcaaaa 28
             ||||||||||||||||||
Sbjct: 91008 agttcccttccagcaaaa 90991



to top

>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence
          Length = 221086

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 20    ccagcaaaaatcgaactacaaa 41
             |||||||||||| |||||||||
Sbjct: 93238 ccagcaaaaatcaaactacaaa 93217



to top

>gb|AC105764.1| Caenorhabditis briggsae cosmid CB026A10, complete sequence
          Length = 55528

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    aatcgaactacaaaagcg 45
             ||||||||||||||||||
Sbjct: 28425 aatcgaactacaaaagcg 28408



to top

>emb|CR386563.1| Gallus gallus finished cDNA, clone ChEST292a22
          Length = 1090

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 9    tcagttcccttccagcaa 26
            ||||||||||||||||||
Sbjct: 1019 tcagttcccttccagcaa 1002



to top

>gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete sequence
          Length = 164168

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 20     ccagcaaaaatcgaactacaaa 41
              |||||||||||| |||||||||
Sbjct: 156694 ccagcaaaaatcaaactacaaa 156673



to top

>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 21    cagcaaaaatcgaactacaaaa 42
             ||||||||||||||| ||||||
Sbjct: 84257 cagcaaaaatcgaaccacaaaa 84236



to top

>gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, complete sequence
          Length = 106659

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 20    ccagcaaaaatcgaactacaaa 41
             |||||||||||| |||||||||
Sbjct: 99789 ccagcaaaaatcaaactacaaa 99810



to top

>gb|AC135279.3| Homo sapiens 12 BAC RP11-114F3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161841

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     ttcccttccagcaaaaat 30
              ||||||||||||||||||
Sbjct: 100416 ttcccttccagcaaaaat 100433



to top

>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 19      tccagcaaaaatcgaactacaa 40
               |||||||||||||| |||||||
Sbjct: 3163892 tccagcaaaaatcgcactacaa 3163913



to top

>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
          Length = 136557

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ttcccttccagcaaaaat 30
             ||||||||||||||||||
Sbjct: 48607 ttcccttccagcaaaaat 48590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,941
Number of Sequences: 3902068
Number of extensions: 330941
Number of successful extensions: 76201
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76146
Number of HSP's gapped (non-prelim): 55
length of query: 54
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 34
effective length of database: 17,155,003,908
effective search space: 583270132872
effective search space used: 583270132872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top