Clone Name | rbart30g01 |
---|---|
Clone Library Name | barley_pub |
>gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, partial cds Length = 1450 Score = 91.7 bits (46), Expect = 1e-16 Identities = 52/54 (96%) Strand = Plus / Minus Query: 1 aacgactatcagttcccttccagcaaaaatcgaactacaaaagcgctacaaaga 54 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1443 aacgactataagttcccttccagtaaaaatcgaactacaaaagcgctacaaaga 1390
>gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, partial cds Length = 1472 Score = 91.7 bits (46), Expect = 1e-16 Identities = 52/54 (96%) Strand = Plus / Minus Query: 1 aacgactatcagttcccttccagcaaaaatcgaactacaaaagcgctacaaaga 54 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1435 aacgactataagttcccttccagtaaaaatcgaactacaaaagcgctacaaaga 1382
>gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome 18, complete sequence Length = 191085 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tatcagttcccttccagcaaa 27 ||||||||||||||||||||| Sbjct: 47742 tatcagttcccttccagcaaa 47722
>gb|AC084443.1|AC084443 Caenorhabditis briggsae cosmid CB011L08, complete sequence Length = 75137 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ttcccttccagcaaaaatcga 33 ||||||||||||||||||||| Sbjct: 16324 ttcccttccagcaaaaatcga 16344
>gb|AY107741.1| Zea mays PCO155874 mRNA sequence Length = 545 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 atcagttcccttccagcaa 26 ||||||||||||||||||| Sbjct: 124 atcagttcccttccagcaa 106
>gb|AY372757.1| Cooperia oncophora GluCl beta mRNA, complete cds Length = 1480 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 ccttccagcaaaaatcga 33 |||||||||||||||||| Sbjct: 1223 ccttccagcaaaaatcga 1240
>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence Length = 188119 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 atcagttcccttccagca 25 |||||||||||||||||| Sbjct: 113614 atcagttcccttccagca 113631
>emb|BX063773.1|CNS09LDD Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC45DC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1048 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 aaaaatcgaactacaaaa 42 |||||||||||||||||| Sbjct: 92 aaaaatcgaactacaaaa 75
>emb|BX042162.1|CNS094P2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC14AC11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 572 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 aaaaatcgaactacaaaa 42 |||||||||||||||||| Sbjct: 88 aaaaatcgaactacaaaa 71
>emb|BX031376.1|CNS08WDG Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA46DB11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 745 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 aaaaatcgaactacaaaa 42 |||||||||||||||||| Sbjct: 98 aaaaatcgaactacaaaa 81
>emb|AJ851610.1| Gallus gallus mRNA for hypothetical protein, clone 11e7 Length = 3142 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 tcagttcccttccagcaa 26 |||||||||||||||||| Sbjct: 2917 tcagttcccttccagcaa 2900
>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for S-adenosylhomocysteine hydrolase Length = 204138 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 cagcaaaaatcgaactacaaaa 42 ||||||||||||||| |||||| Sbjct: 203248 cagcaaaaatcgaaccacaaaa 203227
>emb|CR352304.6| Zebrafish DNA sequence from clone CH211-192F24 in linkage group 8, complete sequence Length = 19850 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctacaaaagcgctacaaa 52 |||||||||||||||||| Sbjct: 5748 ctacaaaagcgctacaaa 5731
>ref|NM_001012797.1| Gallus gallus proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (PSMD5), mRNA Length = 3142 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 tcagttcccttccagcaa 26 |||||||||||||||||| Sbjct: 2917 tcagttcccttccagcaa 2900
>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence Length = 165879 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 agttcccttccagcaaaa 28 |||||||||||||||||| Sbjct: 91008 agttcccttccagcaaaa 90991
>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence Length = 221086 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 20 ccagcaaaaatcgaactacaaa 41 |||||||||||| ||||||||| Sbjct: 93238 ccagcaaaaatcaaactacaaa 93217
>gb|AC105764.1| Caenorhabditis briggsae cosmid CB026A10, complete sequence Length = 55528 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 aatcgaactacaaaagcg 45 |||||||||||||||||| Sbjct: 28425 aatcgaactacaaaagcg 28408
>emb|CR386563.1| Gallus gallus finished cDNA, clone ChEST292a22 Length = 1090 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 tcagttcccttccagcaa 26 |||||||||||||||||| Sbjct: 1019 tcagttcccttccagcaa 1002
>gb|AC011930.5|AC011930 Homo sapiens, clone RP11-16B21, complete sequence Length = 164168 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 20 ccagcaaaaatcgaactacaaa 41 |||||||||||| ||||||||| Sbjct: 156694 ccagcaaaaatcaaactacaaa 156673
>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and S-adenosylhomocysteine hydrolase, complete cds Length = 127234 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 cagcaaaaatcgaactacaaaa 42 ||||||||||||||| |||||| Sbjct: 84257 cagcaaaaatcgaaccacaaaa 84236
>gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, complete sequence Length = 106659 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 20 ccagcaaaaatcgaactacaaa 41 |||||||||||| ||||||||| Sbjct: 99789 ccagcaaaaatcaaactacaaa 99810
>gb|AC135279.3| Homo sapiens 12 BAC RP11-114F3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161841 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 ttcccttccagcaaaaat 30 |||||||||||||||||| Sbjct: 100416 ttcccttccagcaaaaat 100433
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 19 tccagcaaaaatcgaactacaa 40 |||||||||||||| ||||||| Sbjct: 3163892 tccagcaaaaatcgcactacaa 3163913
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE Length = 136557 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 ttcccttccagcaaaaat 30 |||||||||||||||||| Sbjct: 48607 ttcccttccagcaaaaat 48590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 330,941 Number of Sequences: 3902068 Number of extensions: 330941 Number of successful extensions: 76201 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76146 Number of HSP's gapped (non-prelim): 55 length of query: 54 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 34 effective length of database: 17,155,003,908 effective search space: 583270132872 effective search space used: 583270132872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)