ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30f12 |
|---|---|
| Clone Library Name | barley_pub |
>RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 206 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/47 (59%), Positives = 37/47 (78%) Frame = -3 Query: 473 VQGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 VQGDY+PI R EK +EL+K+T EMK+FKA+ K+ +ER N+R GAR Sbjct: 148 VQGDYLPIVR-EKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
>RL132_BRANA (P41129) 60S ribosomal protein L13-2 (Cold-induced protein C24B)| Length = 206 Score = 56.2 bits (134), Expect = 4e-08 Identities = 28/47 (59%), Positives = 36/47 (76%) Frame = -3 Query: 473 VQGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 VQGDYMPI R EK+ +EL+K+T EMK+ AY K+ +ER N+R GAR Sbjct: 148 VQGDYMPIVR-EKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193
>RL131_BRANA (P41128) 60S ribosomal protein L13-1 (Cold-induced protein C24A)| Length = 206 Score = 55.5 bits (132), Expect = 7e-08 Identities = 28/47 (59%), Positives = 35/47 (74%) Frame = -3 Query: 473 VQGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 VQGDYMPI R EK EL+K+T EMK+ KA+ K+ +ER N+R GAR Sbjct: 148 VQGDYMPIVR-EKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193
>RL13_TOBAC (P49627) 60S ribosomal protein L13 (Clone 6.2.1)| Length = 202 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/47 (55%), Positives = 34/47 (72%) Frame = -3 Query: 473 VQGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 V G YMPI R + +L+ L KV ++MK+F AY KL VER N+R +GAR Sbjct: 144 VHGAYMPIEREKHQLI-LSKVLKKMKSFNAYAKLRVERTNERHIGAR 189
>RL13_CHLSW (O48513) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 208 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = -3 Query: 470 QGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 +G+ +P+ +G K +EL+K+T +MK YGKL +ER+N R G R Sbjct: 150 KGELLPL-KGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194
>RL13_DROME (P41126) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 218 Score = 32.7 bits (73), Expect = 0.49 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -3 Query: 473 VQGDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 ++G +PI + +VE +VT++ K FKA+ L R + R +G R Sbjct: 149 LKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195
>RL13_RAT (P41123) 60S ribosomal protein L13| Length = 210 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -3 Query: 467 GDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 G MPI K+ + +TEE K FKA+ L + R N R G R Sbjct: 151 GPVMPIRNVYKK-EKARAITEEEKNFKAFASLRMARANARLFGIR 194
>SYC_HAEIN (P43816) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 459 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 452 ITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 I RG + + V ++++FK YGKL + + Q Q GAR Sbjct: 129 IKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGAR 168
>SYC_HAEI8 (Q4QPG7) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 459 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 452 ITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 I RG + + V ++++FK YGKL + + Q Q GAR Sbjct: 129 IKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGAR 168
>RL13_MOUSE (P47963) 60S ribosomal protein L13 (A52)| Length = 210 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -3 Query: 467 GDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 G MPI K+ + +TEE K FKA+ L + R N R G R Sbjct: 151 GPVMPIRNVYKK-EKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_BOVIN (Q56JZ1) 60S ribosomal protein L13| Length = 210 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -3 Query: 467 GDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 G MPI K+ + +TEE K FKA+ L + R N R G R Sbjct: 151 GPVMPIRNVYKK-EKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_SCHPO (O74175) 60S ribosomal protein L13| Length = 208 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -3 Query: 458 MPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 +PIT ++ + E +TEE K F A+ L ER R GAR Sbjct: 153 LPIT--QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
>RL13_HUMAN (P26373) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 467 GDYMPITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 333 G MP+ K+ + +TEE K FKA+ L + R N R G R Sbjct: 151 GPVMPVRNVYKK-EKARVITEEEKNFKAFASLRMARANARLFGIR 194
>ZDH15_XENLA (Q5FWL7) Palmitoyltransferase ZDHHC15 (EC 2.3.1.-) (Zinc finger| DHHC domain-containing protein 15 homolog) (DHHC-15) Length = 338 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -3 Query: 152 WISTLVGGSGYDLFLLLFVPKMYWSSYDGC 63 W++ +G S Y FLL M + Y GC Sbjct: 161 WVNNCIGYSNYKFFLLFLAYAMLYCLYIGC 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,882,859 Number of Sequences: 219361 Number of extensions: 1112476 Number of successful extensions: 2521 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2480 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2513 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
