Clone Name | rbart30f12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463021.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.6 mRNA Length = 1020 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 713 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 654 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 653 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 594 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 593 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 534 Query: 471 gacct 475 ||||| Sbjct: 533 gacct 529
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20894117 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20894176 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 20894177 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20894236 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20894237 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20894296 Query: 471 gacct 475 ||||| Sbjct: 20894297 gacct 20894301
>gb|AY323130.1| Oryza sativa (japonica cultivar-group) ribosomal protein large subunit 13 mRNA, complete cds Length = 940 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 701 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 642 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 641 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 582 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 581 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 522 Query: 471 gacct 475 ||||| Sbjct: 521 gacct 517
>gb|DQ083184.1| Oryza sativa (indica cultivar-group) clone 4S3B53 mRNA sequence Length = 471 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 326 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 267 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 266 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 207 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 206 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 147 Query: 471 gacct 475 ||||| Sbjct: 146 gacct 142
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20887146 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20887205 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 20887206 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20887265 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20887266 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20887325 Query: 471 gacct 475 ||||| Sbjct: 20887326 gacct 20887330
>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence Length = 167323 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 28395 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 28336 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 28335 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 28276 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 28275 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 28216 Query: 471 gacct 475 ||||| Sbjct: 28215 gacct 28211
>emb|AJ272394.1|OSA272394 Oryza sativa mRNA for putative cold-induced protein (cip1 gene) Length = 900 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 688 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 629 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 628 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 569 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 568 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 509 Query: 471 gacct 475 ||||| Sbjct: 508 gacct 504
>dbj|AK104895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A02, full insert sequence Length = 906 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 722 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 663 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 662 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 603 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 602 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 543 Query: 471 gacct 475 ||||| Sbjct: 542 gacct 538
>dbj|AK104259.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G09, full insert sequence Length = 1047 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 719 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 660 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 659 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 600 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 599 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 540 Query: 471 gacct 475 ||||| Sbjct: 539 gacct 535
>dbj|AK070375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054I18, full insert sequence Length = 919 Score = 184 bits (93), Expect = 2e-43 Identities = 162/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 721 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 662 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 661 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 602 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 601 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 542 Query: 471 gacct 475 ||||| Sbjct: 541 gacct 537
>dbj|AB051074.1| Oryza sativa (japonica cultivar-group) bbc1l mRNA for BBC1-like protein, complete cds Length = 705 Score = 180 bits (91), Expect = 3e-42 Identities = 161/185 (87%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||||||||| || ||| ||||| | ||||||||| || || Sbjct: 495 tcacttcttctcttccttctctgcctcagcagccctcttctggsgggcaccaacatggcg 436 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 435 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 376 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 375 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 316 Query: 471 gacct 475 ||||| Sbjct: 315 gacct 311
>gb|AF487458.1| Triticum aestivum BBC1-like protein mRNA, complete cds Length = 867 Score = 157 bits (79), Expect = 4e-35 Identities = 163/191 (85%) Strand = Plus / Minus Query: 285 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 344 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 624 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 565 Query: 345 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctc 404 ||| |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| Sbjct: 564 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 505 Query: 405 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 464 ||| |||||||||| || ||| || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 504 ctctgtgaccttcacgacctcgactgagcgcttctcgccacgggcaatgggcatgtagtc 445 Query: 465 accctggacct 475 ||||||||||| Sbjct: 444 accctggacct 434
>ref|NM_185433.2| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 471 gacct 475 ||||| Sbjct: 524 gacct 520
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 866728 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 866787 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 866788 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 866847 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 866848 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 866907 Query: 471 gacct 475 ||||| Sbjct: 866908 gacct 866912
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 149862 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 149921 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 149922 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 149981 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 149982 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 150041 Query: 471 gacct 475 ||||| Sbjct: 150042 gacct 150046
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 47623 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 47682 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 47683 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 47742 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 47743 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 47802 Query: 471 gacct 475 ||||| Sbjct: 47803 gacct 47807
>dbj|AK070995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078L22, full insert sequence Length = 906 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 471 gacct 475 ||||| Sbjct: 524 gacct 520
>gb|AY109921.1| Zea mays CL187_21 mRNA sequence Length = 963 Score = 145 bits (73), Expect = 2e-31 Identities = 157/185 (84%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 350 |||||| ||||| |||||||||||||| || ||||||||| |||||||||||| || Sbjct: 656 tcacttgttttcatccttctctgcctcagccgccttcttctggcgggcaccaaggtgttt 597 Query: 351 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 410 || |||||||| ||| | || |||||||||||||||| |||| ||||||||| ||||| Sbjct: 596 cttgttcatccgctcaagacggagcttgccgtaggccgcaaacgacttcatctcatcagt 537 Query: 411 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 470 ||||||| | ||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct: 536 aaccttcacaacctcgactgagcgcttctcaccacgagtaataggcatgtagtcaccctg 477 Query: 471 gacct 475 ||||| Sbjct: 476 gacct 472
>emb|AJ222784.1|HVJ222784 Hordeum vulgare mRNA for ribosomal like-protein, clone RG131 Length = 291 Score = 133 bits (67), Expect = 6e-28 Identities = 160/191 (83%) Strand = Plus / Minus Query: 285 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 344 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 232 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 173 Query: 345 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctc 404 ||| |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| Sbjct: 172 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 113 Query: 405 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 464 ||| || |||||| || || || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 112 ctctgtcaccttcgcgacatccactgagcgcttctctccacgggcaatgggcatgtagtc 53 Query: 465 accctggacct 475 ||||||||||| Sbjct: 52 accctggacct 42
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 333 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 388 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 3696256 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 3696315 Query: 389 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 448 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 3696316 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 3696375 Query: 449 taataggcat 458 ||||||||| Sbjct: 3696376 caataggcat 3696385
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 333 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 388 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 19753 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 19812 Query: 389 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 448 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 19813 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 19872 Query: 449 taataggcat 458 ||||||||| Sbjct: 19873 caataggcat 19882
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 333 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 388 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 174762 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 174821 Query: 389 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 448 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 174822 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 174881 Query: 449 taataggcat 458 ||||||||| Sbjct: 174882 caataggcat 174891
>ref|NM_189111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 380 cgtaggccttgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttct 439 ||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||| Sbjct: 928 cgtaggccttgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttct 869 Query: 440 caccacgagtaataggcat 458 |||| |||| ||||||||| Sbjct: 868 caccgcgagcaataggcat 850
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 162 tgaacagcataccatgcaaacaagtac 188 |||||| |||||||||||||||||||| Sbjct: 194726 tgaacaacataccatgcaaacaagtac 194752
>gb|DQ200371.1| Solanum tuberosum clone 057F09 unknown mRNA Length = 820 Score = 44.1 bits (22), Expect = 0.41 Identities = 40/46 (86%) Strand = Plus / Minus Query: 373 agcttgccgtaggccttgaacgccttcatctcctcagtgaccttca 418 |||||||| ||||||||||| | |||||||| || |||||||||| Sbjct: 542 agcttgccataggccttgaatgatttcatctcatctgtgaccttca 497
>gb|AC013351.7| Drosophila melanogaster clone BACR06H06, complete sequence Length = 186935 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 tgaaacaaaatatcttatcact 295 |||||||||||||||||||||| Sbjct: 127993 tgaaacaaaatatcttatcact 128014
>gb|AC018484.5| Drosophila melanogaster clone BACR13A13, complete sequence Length = 172746 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 tgaaacaaaatatcttatcact 295 |||||||||||||||||||||| Sbjct: 54139 tgaaacaaaatatcttatcact 54160
>gb|AC110489.7| Homo sapiens 3 BAC RP11-324N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 19236 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 291 tcacttcttttcttccttctct 312 |||||||||||||||||||||| Sbjct: 13499 tcacttcttttcttccttctct 13520
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 377 tgccgtaggccttgaacgccttcatc 402 |||||| ||||||||||||||||||| Sbjct: 5691966 tgccgtcggccttgaacgccttcatc 5691941
>gb|AE003782.4| Drosophila melanogaster chromosome 2L, section 81 of 83 of the complete sequence Length = 298116 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 tgaaacaaaatatcttatcact 295 |||||||||||||||||||||| Sbjct: 272847 tgaaacaaaatatcttatcact 272868
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 cttttcttccttctctgcctc 317 ||||||||||||||||||||| Sbjct: 1874742 cttttcttccttctctgcctc 1874722
>gb|AY743426.1| Metridium senile NaK-ATPase alpha subunit isoform 1 mRNA, partial cds Length = 605 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 caaacaagtaccacgtatcaa 198 ||||||||||||||||||||| Sbjct: 277 caaacaagtaccacgtatcaa 297
>ref|XM_960094.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctc 311 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>ref|XM_328761.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tcacttcttttcttccttctc 311 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence Length = 209942 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cctcagtgaccttcatgagct 424 ||||||||||||||||||||| Sbjct: 59628 cctcagtgaccttcatgagct 59648
>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains part of a novel gene (FLJ22153) and a CpG island, complete sequence Length = 99441 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 cacttcttttcttccttctctgcct 316 ||||||||||||||| ||||||||| Sbjct: 53023 cacttcttttcttccctctctgcct 52999
>emb|AL356117.16| Human DNA sequence from clone RP11-258G21 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 127079 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 tatcttatcacttcttttctt 304 ||||||||||||||||||||| Sbjct: 62543 tatcttatcacttcttttctt 62563
>gb|AC146674.3| Callithrix jacchus clone CH259-338M13, complete sequence Length = 228448 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 cttttcttccttctctgcctc 317 ||||||||||||||||||||| Sbjct: 150787 cttttcttccttctctgcctc 150767
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aaatagaagaagaaacaagtc 119 ||||||||||||||||||||| Sbjct: 155030 aaatagaagaagaaacaagtc 155010
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 tatcacttcttttcttccttctctg 313 ||||||||| ||||||||||||||| Sbjct: 4843 tatcacttcatttcttccttctctg 4867
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 tatcacttcttttcttccttctctg 313 ||||||||| ||||||||||||||| Sbjct: 49125 tatcacttcatttcttccttctctg 49149
>gb|AC155832.2| Mus musculus 10 BAC RP24-147J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 153257 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aaatagaagaagaaacaagtc 119 ||||||||||||||||||||| Sbjct: 2206 aaatagaagaagaaacaagtc 2186
>ref|XM_515164.1| PREDICTED: Pan troglodytes similar to sterol regulatory element-binding transcription factor 2; sterol regulatory element-binding protein 2 (LOC458872), mRNA Length = 2372 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 301 cttccttctctccctcggcggcct 324
>ref|NM_173065.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 3, mRNA Length = 4418 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 2104 tcttccttctctgcctcggc 2123
>ref|NM_173064.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 2, mRNA Length = 4462 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 2148 tcttccttctctgcctcggc 2167
>ref|NM_170743.2| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 1, mRNA Length = 4549 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 2235 tcttccttctctgcctcggc 2254
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctgcctc 317 |||||||||||||| ||||||||| Sbjct: 448320 cttcttttcttcctcctctgcctc 448343
>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence Length = 165197 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctgcctc 317 |||||||||||||| ||||||||| Sbjct: 42366 cttcttttcttcctcctctgcctc 42389
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ggtacaaatagaagaagaaa 113 |||||||||||||||||||| Sbjct: 4602971 ggtacaaatagaagaagaaa 4602952
>gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, complete sequence Length = 173365 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gcctggtctctatttccagc 225 |||||||||||||||||||| Sbjct: 36916 gcctggtctctatttccagc 36935
>gb|BC056158.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone MGC:65097 IMAGE:6169568), complete cds Length = 4290 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 431 cttccttctctccctcggcggcct 454
>gb|AC117586.10| Mus musculus chromosome 3, clone RP23-166M8, complete sequence Length = 215166 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cttcttttcttccttctctg 313 |||||||||||||||||||| Sbjct: 30587 cttcttttcttccttctctg 30568
>gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV.1 (SLV.1), SLV.1B (SLV.1B), SLV.2 (SLV.2), SLV.3 (SLV.3), SLV.4 (SLV.4), SLV.5 (SLV.5), SLV.6 (SLV.6), SLV.7, SLV.8, SLV.9 (SLV.9), SLV.10 (SLV.10), SLV.11 (SLV.11), SLV.12 (SLV.12), SLV.13 (SLV.13), SLV.14 (SLV.14), SLV.15 (SLV.15), SLV.16 (SLV.16), SLV.17 (SLV.17), SLV.18 (SLV.18), RegA (regA), TraSLVA (traSLVA), SLV.21 (SLV.21), ParSLV (parSLV), SLV.23 (SLV.23), SLV.24 (SLV.24), TpgSLV (tpgSLV), SLV.26 (SLV.26), SLV.27 (SLV.27), TraSLVB (traSLVB), SLV.29 (SLV.29), SLV.30 (SLV.30), TraSLR, SLV.32 (SLV.32), SLV.33 (SLV.33), SLV.34 (SLV.34), SLV.35 (SLV.35), SLV.36 (SLV.36), and SLV.37 (SLV.37) genes, complete cds Length = 41987 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tccttctctgcctcggcggc 323 |||||||||||||||||||| Sbjct: 36942 tccttctctgcctcggcggc 36923
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctg 313 |||||||||||||||||||| Sbjct: 22319 cttcttttcttccttctctg 22338
>gb|AY456009.1| Cochliobolus heterostrophus putative histidine kinase HHK6p (HHK6) gene, complete cds Length = 4570 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ccttcatgagctcaaccaag 432 |||||||||||||||||||| Sbjct: 3081 ccttcatgagctcaaccaag 3062
>gb|BC051385.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5497929), containing frame-shift errors Length = 5706 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 400 cttccttctctccctcggcggcct 423
>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence Length = 177050 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gccttcatctcctcagtgac 413 |||||||||||||||||||| Sbjct: 109030 gccttcatctcctcagtgac 109011
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 taggacaagtccccgatgataaca 263 ||||||||||| |||||||||||| Sbjct: 303643 taggacaagtcgccgatgataaca 303666
>gb|AF439325.1| Homo sapiens putative class II cytokine receptor CRF2/12 (CRF2/12) mRNA, complete cds Length = 4536 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 2222 tcttccttctctgcctcggc 2241
>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the genes for SREBF2 (sterol regulatory element binding transcription factor 2), NAGA (alpha-N-acetylgalactosaminidase), a gene similar to neuronal-specific septin 3, a pseudogene similar to ANT2 (adenine nucleotide translocator 2), 2 mRNAs based on ESTs, a genomic marker D22S1178, a CA repeat polymorpism, ESTs and a CpG island, complete sequence Length = 220895 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 10275 cttccttctctccctcggcggcct 10298
>emb|AL731556.11| Human DNA sequence from clone RP11-428P16 on chromosome 10 Contains the 5' end of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, a novel zinc finger pseudogene (KIAA1629) and two CpG islands, complete sequence Length = 203003 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 acttcttttcttccttctct 312 |||||||||||||||||||| Sbjct: 92160 acttcttttcttccttctct 92141
>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5' end of the IL22RA1 gene for interleukin 22 receptor alpha 1, the IL28RA gene for interleukin 28 receptor alpha (interferon, lambda receptor), a novel gene and the 3' end of a novel gene, complete sequence Length = 164684 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 21070 tcttccttctctgcctcggc 21051
>ref|NM_053185.1| Mus musculus procollagen, type IV, alpha 6 (Col4a6), mRNA Length = 6021 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 ggccttgaacgccttcatctcctc 407 ||||||| |||||||||||||||| Sbjct: 1389 ggccttggacgccttcatctcctc 1366
>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete sequence Length = 147810 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctg 313 |||||||||||||||||||| Sbjct: 72436 cttcttttcttccttctctg 72455
>emb|AL157703.14| Human DNA sequence from clone RP11-79K3 on chromosome 9p23-24.3, complete sequence Length = 90278 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 aagacaaaatttaggacaag 248 |||||||||||||||||||| Sbjct: 56549 aagacaaaatttaggacaag 56568
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ttcttttcttccttctctgc 314 |||||||||||||||||||| Sbjct: 173415 ttcttttcttccttctctgc 173434
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 ggtagaaatccatcgactcactga 164 ||||||||||||| |||||||||| Sbjct: 146112 ggtagaaatccatagactcactga 146089
>emb|AL627262.8| Zebrafish DNA sequence from clone RP71-1L7 in linkage group 15 Contains part of a novel gene similar to human GRID2 (ionotropic glutamate receptor delta 2) and a CpG island, complete sequence Length = 145079 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtacattttgggtacaaata 103 |||||||||||||||||||| Sbjct: 101453 gtacattttgggtacaaata 101472
>gb|BC066703.1| Danio rerio zgc:77049, mRNA (cDNA clone MGC:77049 IMAGE:6959871), complete cds Length = 3100 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 acttcttttcttccttctct 312 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>ref|NM_212874.1| Danio rerio zgc:77049 (zgc:77049), mRNA Length = 3100 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 acttcttttcttccttctct 312 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>emb|CR590934.1| full-length cDNA clone CS0DJ001YF16 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1804 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 443 cttccttctctccctcggcggcct 466
>gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, complete sequence Length = 160074 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 gagtaataggcatatagtca 465 |||||||||||||||||||| Sbjct: 50212 gagtaataggcatatagtca 50193
>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence Length = 163377 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 gagtaataggcatatagtca 465 |||||||||||||||||||| Sbjct: 46492 gagtaataggcatatagtca 46511
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence Length = 124955 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atttgctcttatttcatacc 32 |||||||||||||||||||| Sbjct: 91765 atttgctcttatttcatacc 91784
>gb|BC051799.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5498684), partial cds Length = 5251 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 451 cttccttctctccctcggcggcct 474
>ref|NM_004599.2| Homo sapiens sterol regulatory element binding transcription factor 2 (SREBF2), mRNA Length = 4325 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 462 cttccttctctccctcggcggcct 485
>gb|AC154180.2| Mus musculus BAC clone RP24-469E6 from chromosome 14, complete sequence Length = 187810 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ttcttttcttccttctctgc 314 |||||||||||||||||||| Sbjct: 10293 ttcttttcttccttctctgc 10312
>dbj|AK090269.1| Mus musculus adult male vesicular gland cDNA, RIKEN full-length enriched library, clone:G630031L05 product:procollagen, type IV, alpha 6, full insert sequence Length = 3096 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 ggccttgaacgccttcatctcctc 407 ||||||| |||||||||||||||| Sbjct: 341 ggccttggacgccttcatctcctc 318
>gb|BC057648.1| Mus musculus procollagen, type IV, alpha 6, mRNA (cDNA clone MGC:67937 IMAGE:3500535), complete cds Length = 3952 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 ggccttgaacgccttcatctcctc 407 ||||||| |||||||||||||||| Sbjct: 1287 ggccttggacgccttcatctcctc 1264
>gb|AC069014.21|AC069014 Mus musculus 11 BAC RP23-278K23 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 181557 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 cttcttttcttccttctctgcctc 317 ||||||| |||||||||||||||| Sbjct: 17258 cttctttccttccttctctgcctc 17235
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctgcctc 317 ||||||| |||||||||||||||| Sbjct: 8417 cttctttccttccttctctgcctc 8440
>dbj|AK160364.1| Homo sapiens mRNA for FLJ00190 protein Length = 4519 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcttccttctctgcctcggc 320 |||||||||||||||||||| Sbjct: 2225 tcttccttctctgcctcggc 2244
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atcacttcttttcttccttc 309 |||||||||||||||||||| Sbjct: 89941 atcacttcttttcttccttc 89960
>emb|CT841522.1| Homo sapiens SREBF2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SREBF2.V2) Length = 3606 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 375 cttccttctctccctcggcggcct 398
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cacttcttttcttccttctc 311 |||||||||||||||||||| Sbjct: 149849 cacttcttttcttccttctc 149830
>emb|AL954677.8| Zebrafish DNA sequence from clone DKEY-13J14 in linkage group 8, complete sequence Length = 186836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtacattttgggtacaaata 103 |||||||||||||||||||| Sbjct: 59572 gtacattttgggtacaaata 59591
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ggtacaaatagaagaagaaa 113 |||||||||||||||||||| Sbjct: 4748379 ggtacaaatagaagaagaaa 4748360
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcttttcttccttctctgcctc 317 ||||||| |||||||||||||||| Sbjct: 42732 cttctttccttccttctctgcctc 42755
>emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on chromosome X, complete sequence Length = 202742 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 ggccttgaacgccttcatctcctc 407 ||||||| |||||||||||||||| Sbjct: 44455 ggccttggacgccttcatctcctc 44478
>gb|U02031.1|HSU02031 Human sterol regulatory element binding protein-2 mRNA, complete cds Length = 4249 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cttccttctctgcctcggcggcct 325 ||||||||||| |||||||||||| Sbjct: 410 cttccttctctccctcggcggcct 433
>dbj|AB041351.1| Mus musculus Col4a6 mRNA for type IV collagen alpha 6 chain, complete cds Length = 6021 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 ggccttgaacgccttcatctcctc 407 ||||||| |||||||||||||||| Sbjct: 1389 ggccttggacgccttcatctcctc 1366 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,792,193 Number of Sequences: 3902068 Number of extensions: 4792193 Number of successful extensions: 108234 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107716 Number of HSP's gapped (non-prelim): 512 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)