ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HTPX_PICTO (Q6L2Q7) Probable protease htpX homolog (EC 3.4.24.-) 28 6.3
2R1B16_SOLDE (Q6L400) Putative late blight resistance protein hom... 28 6.3

>HTPX_PICTO (Q6L2Q7) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 307

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 6   YIRLLDLIEWLTVKYFLWDTRTLEQMASQSQHTHL 110
           ++  +D+I+WL   Y +  T  L++++  SQ+ +L
Sbjct: 49  FVLFIDIIQWLVSPYIIGMTYRLQKVSPMSQYGYL 83



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>R1B16_SOLDE (Q6L400) Putative late blight resistance protein homolog R1B-16|
          Length = 1284

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 112 EYLLDSCIATEMNHYRIAGW 171
           EY++D+CI   + H+R+ GW
Sbjct: 474 EYVVDACINKGIPHWRLKGW 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,860,552
Number of Sequences: 219361
Number of extensions: 525773
Number of successful extensions: 960
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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