ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30f03 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 77.8 bits (190), Expect = 2e-14 Identities = 42/98 (42%), Positives = 64/98 (65%) Frame = -3 Query: 498 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKT 319 AS+ M D + + F+AL + NYLR+Q+++LTG T+ +D A++ NM+ L+ +G++LL K+ Sbjct: 294 ASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKS 353 Query: 318 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DNPETYEEALKRFAKLLSDRKKLR 380
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 77.0 bits (188), Expect = 3e-14 Identities = 42/98 (42%), Positives = 62/98 (63%) Frame = -3 Query: 498 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKT 319 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 318 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 77.0 bits (188), Expect = 3e-14 Identities = 42/98 (42%), Positives = 62/98 (63%) Frame = -3 Query: 498 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKT 319 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 318 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 76.3 bits (186), Expect = 4e-14 Identities = 42/98 (42%), Positives = 61/98 (62%) Frame = -3 Query: 498 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKT 319 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344 Query: 318 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 VS+ D T EEAL RFAK LS +KLR Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLR 371
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 75.1 bits (183), Expect = 1e-13 Identities = 41/98 (41%), Positives = 61/98 (62%) Frame = -3 Query: 498 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKT 319 AS+ M D + + +F+A + NYLR+Q+++L G T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 318 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>MURA_GEOMG (Q39YP9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 417 Score = 32.0 bits (71), Expect = 0.97 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = -3 Query: 468 AVLFEALRIEENYLRIQDDSLTGQTSSVDIATKGN-----MEALIGIGKNLL------TK 322 A L +R+E Y+ + L G + DIAT G M A + G+ +L + Sbjct: 131 AALGADIRLEHGYVEAKAKKLKGARINFDIATVGGTEQLMMAAALAKGETILENAAREPE 190 Query: 321 TVSRVNIDNGMYETVDGAGTN 259 + +I N M +DGAGT+ Sbjct: 191 IIDLADILNRMGARIDGAGTD 211
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%) Frame = -2 Query: 424 HPGRLAHGANVLGGYRHQREHGGAYWDR*ESAH-----------QDRIPGKH 302 HPG HGA GG Q+ H G AH +D++PG H Sbjct: 38 HPGTATHGAPATGGAYGQQGHAGTTGTGLHGAHAGEKKGVMENIKDKLPGGH 89
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -3 Query: 345 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 187 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)| Length = 335 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = -3 Query: 456 EALRIEENYLRIQDDSLTGQTSSVDIATKGN-MEALIGIGKNLLTKTVSRVNIDNGMYE 283 E L+I+ N + DD G + KGN +E I G ++LTKTV + ++GMY+ Sbjct: 139 EFLKIDGNKIHTTDDFRMGLALA-----KGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192
>SGO1_CAEEL (Q18412) Shugoshin| Length = 307 Score = 29.3 bits (64), Expect = 6.3 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -3 Query: 444 IEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAG 265 I+EN +R ++S + TSS+ A G +GK ++ N D+ + E Sbjct: 158 IDENEIRFDNNS-SQSTSSIQNAVNGTPRKKQSVGKGRRSELFQSFNADSSIVEEASTIP 216 Query: 264 TNEEA 250 TN A Sbjct: 217 TNRRA 221
>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.3 bits (64), Expect = 6.3 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 441 EENYLRIQDDSLTGQT--SSVDIATKGNMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 268 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 267 GTNEEALVR 241 G E LVR Sbjct: 209 GVEESELVR 217
>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.3 bits (64), Expect = 6.3 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 441 EENYLRIQDDSLTGQT--SSVDIATKGNMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 268 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 267 GTNEEALVR 241 G E LVR Sbjct: 209 GVEESELVR 217
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +3 Query: 195 GWFGAACAPRRASWRSGRAPLHWCQHRRRSHTSHCQCLPG 314 GWFG ACA +R S G A C H T C+C PG Sbjct: 931 GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961
>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 549 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 441 EENYLRIQDDSLTGQT--SSVDIATKGNMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 268 EE LRI S+TG+ S ++ K ++A+ + + K V V++DN +E G Sbjct: 151 EETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 267 GTNEEALVR 241 G E LVR Sbjct: 209 GVEESELVR 217
>ANXA1_MOUSE (P10107) Annexin A1 (Annexin I) (Lipocortin I) (Calpactin II)| (Chromobindin-9) (p35) (Phospholipase A2 inhibitory protein) Length = 345 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/76 (26%), Positives = 35/76 (46%) Frame = -3 Query: 447 RIEENYLRIQDDSLTGQTSSVDIATKGNMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 268 R+ +NY + + ++D+ KG++E + T T + +YE + GA Sbjct: 234 RVFQNYGKYSQHDMN---KALDLELKGDIEKCLTTIVKCATSTPAF--FAEKLYEAMKGA 288 Query: 267 GTNEEALVRFAKRLSE 220 GT +AL+R SE Sbjct: 289 GTRHKALIRIMVSRSE 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,642,888 Number of Sequences: 219361 Number of extensions: 1373271 Number of successful extensions: 4010 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4005 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
