ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (... 28 9.7
2MYCN_HUMAN (P04198) N-myc proto-oncogene protein 28 9.7

>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 322 PPLRDSVTQEDAGDGGAG-----RSSPPLRRPRAVPWRAGV 429
           PP R  V    AG GG G     R  PPL +P A P+   V
Sbjct: 27  PPGRQVVMLLTAGSGGRGGGGGRRQQPPLAQPSASPYPEAV 67



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>MYCN_HUMAN (P04198) N-myc proto-oncogene protein|
          Length = 464

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -3

Query: 426 ASAPRHGPRAAEGRG*PASAAVPGV 352
           ASAP  GP  A G G  A A  PGV
Sbjct: 210 ASAPAAGPAVASGAGIAAPAGAPGV 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,867,355
Number of Sequences: 219361
Number of extensions: 741974
Number of successful extensions: 1895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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