ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRA2_CAERE (Q9NIW4) Sex-determining transformer protein 2 precur... 30 3.5
2LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 29 7.8

>TRA2_CAERE (Q9NIW4) Sex-determining transformer protein 2 precursor (Cr-tra-2)|
          Length = 1485

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
 Frame = +3

Query: 33   PKNEPARPVPC----------RPHLVPPNTE*TYPKHHRTQTPH 134
            P+  PA PVP           RPH +PP  + T P+  RT+ P+
Sbjct: 1324 PREIPANPVPPPTHVLVQRAPRPHEMPPVIDRTIPRDPRTEPPN 1367



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>LPXK_CAUCR (P58184) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 335

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 258 TTHNEWPFVQAKVFPAFRCGQA*NWNLLGRDLVILAMPYD 377
           T   EWPF   +VFPA    +     L   D VI+ +P D
Sbjct: 167 TRGGEWPFGDGRVFPAGPMREPLKVGLSRADAVIVLLPVD 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,972,305
Number of Sequences: 219361
Number of extensions: 1166075
Number of successful extensions: 3037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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