Clone Name | rbart30d12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 87.7 bits (44), Expect = 3e-14 Identities = 158/196 (80%) Strand = Plus / Minus Query: 210 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 269 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 1139 Query: 270 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 329 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 1138 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 1079 Query: 330 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 389 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 1078 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 1019 Query: 390 cgatggagcccgcact 405 |||| ||||||||||| Sbjct: 1018 cgatcgagcccgcact 1003
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 87.7 bits (44), Expect = 3e-14 Identities = 158/196 (80%) Strand = Plus / Plus Query: 210 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 269 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 23538596 Query: 270 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 329 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 23538597 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 23538656 Query: 330 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 389 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 23538657 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 23538716 Query: 390 cgatggagcccgcact 405 |||| ||||||||||| Sbjct: 23538717 cgatcgagcccgcact 23538732 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcatccccaatcttcaccaa 360 ||||||||||||||||||||| Sbjct: 26302374 ctcatccccaatcttcaccaa 26302394
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 87.7 bits (44), Expect = 3e-14 Identities = 158/196 (80%) Strand = Plus / Plus Query: 210 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 269 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 18371 Query: 270 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 329 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 18372 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 18431 Query: 330 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 389 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 18432 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 18491 Query: 390 cgatggagcccgcact 405 |||| ||||||||||| Sbjct: 18492 cgatcgagcccgcact 18507
>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence Length = 163910 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 aagcacatattatatgtgcta 48 ||||||||||||||||||||| Sbjct: 98064 aagcacatattatatgtgcta 98084
>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the 3' end of the gene for a novel protein (FLJ31204), complete sequence Length = 106636 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 tataaagcacatattatatgt 44 ||||||||||||||||||||| Sbjct: 54287 tataaagcacatattatatgt 54307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ttacggcgtcggcggcgctca 226 ||||||||||||||||||||| Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692
>gb|AC011069.7|AC011069 Drosophila melanogaster, chromosome X, region 12B-12C, BAC clone BACR11H20, complete sequence Length = 168384 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 atgattaaatcaaacaaacag 114 ||||||||||||||||||||| Sbjct: 80471 atgattaaatcaaacaaacag 80491
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 ggccggtctccaggtccaccc 317 ||||||||||||||||||||| Sbjct: 1129003 ggccggtctccaggtccaccc 1129023
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcatccccaatcttcaccaa 360 ||||||||||||||||||||| Sbjct: 31955 ctcatccccaatcttcaccaa 31975
>ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 (ENSANGG00000016941), partial mRNA Length = 1459 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 243 cgtacttggcgagctcctccgcgtt 267 |||||||||| |||||||||||||| Sbjct: 1264 cgtacttggccagctcctccgcgtt 1240
>ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 (ENSANGG00000016941), mRNA Length = 1731 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 243 cgtacttggcgagctcctccgcgtt 267 |||||||||| |||||||||||||| Sbjct: 1536 cgtacttggccagctcctccgcgtt 1512
>gb|AE003493.3| Drosophila melanogaster chromosome X, section 45 of 74 of the complete sequence Length = 307761 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 atgattaaatcaaacaaacag 114 ||||||||||||||||||||| Sbjct: 194991 atgattaaatcaaacaaacag 195011
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 ggccggtctccaggtccaccc 317 ||||||||||||||||||||| Sbjct: 802362 ggccggtctccaggtccaccc 802382
>gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194151 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catataaagcacatattata 41 |||||||||||||||||||| Sbjct: 70465 catataaagcacatattata 70446
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cggcgtcggcggcgctcatc 228 |||||||||||||||||||| Sbjct: 113747 cggcgtcggcggcgctcatc 113766
>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence Length = 257790 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 catataaagcacatattata 41 |||||||||||||||||||| Sbjct: 255591 catataaagcacatattata 255610
>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence Length = 186488 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catataaagcacatattata 41 |||||||||||||||||||| Sbjct: 152716 catataaagcacatattata 152697
>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence Length = 203891 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 taatgactcttgcacaagac 69 |||||||||||||||||||| Sbjct: 129318 taatgactcttgcacaagac 129337
>gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complete cds Length = 740 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 202 tacttggcgagctcctccgc 183
>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0) partial mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cacatattatatgtgctaat 50 |||||||||||||||||||| Sbjct: 274 cacatattatatgtgctaat 255
>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 974 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 gcacctccacattccggccggtct 305 ||||||||||||||| |||||||| Sbjct: 310 gcacctccacattcccgccggtct 287
>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20 Contains the gene for a novel protein (zgc:63952), the 3' end of the gene for a novel protein similar to mouse and human importin 4 (IPO4), three genes for transposase, a novel gene and six CpG islands, complete sequence Length = 190000 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 caattgctagtttggtttgaggca 196 |||||||| ||||||||||||||| Sbjct: 60892 caattgctggtttggtttgaggca 60869
>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19, complete sequence Length = 147881 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 57178 tacttggcgagctcctccgc 57197
>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence Length = 180854 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttgaacacatacattaaact 166 |||||||||||||||||||| Sbjct: 37889 ttgaacacatacattaaact 37870
>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence Length = 73460 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttgaacacatacattaaact 166 |||||||||||||||||||| Sbjct: 50721 ttgaacacatacattaaact 50702
>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence Length = 160046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttgaacacatacattaaact 166 |||||||||||||||||||| Sbjct: 151905 ttgaacacatacattaaact 151886
>ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA Length = 1033 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 204 tacttggcgagctcctccgc 185
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 275 ccaccgggcacctccacattccggccgg 302 |||||||||| ||| ||||||||||||| Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 caccttctcggcgagaagct 341 |||||||||||||||||||| Sbjct: 1880735 caccttctcggcgagaagct 1880754
>gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, complete cds Length = 730 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 211 tacttggcgagctcctccgc 192
>gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene, complete cds Length = 2987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 879 tacttggcgagctcctccgc 860
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20, complete sequence Length = 73842 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tataaagcacatattatatg 43 |||||||||||||||||||| Sbjct: 27565 tataaagcacatattatatg 27584
>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete sequence Length = 255824 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 226591 tacttggcgagctcctccgc 226610
>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20, complete sequence Length = 163967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttttcatgtcatataaagca 32 |||||||||||||||||||| Sbjct: 59860 ttttcatgtcatataaagca 59879
>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete sequence Length = 151887 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttgaacacatacattaaact 166 |||||||||||||||||||| Sbjct: 81263 ttgaacacatacattaaact 81244
>gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, complete cds Length = 1051 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tacttggcgagctcctccgc 264 |||||||||||||||||||| Sbjct: 190 tacttggcgagctcctccgc 171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,674,436 Number of Sequences: 3902068 Number of extensions: 3674436 Number of successful extensions: 89447 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89097 Number of HSP's gapped (non-prelim): 347 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)