ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VN1R1_HUMAN (Q9GZP7) Vomeronasal type-1 receptor 1 (V1r-like rec... 30 5.6

>VN1R1_HUMAN (Q9GZP7) Vomeronasal type-1 receptor 1 (V1r-like receptor 1)|
           (Vomeronasal olfactory receptor chromosome 19 subtype I
           member 1) (V3r-related gene) (hGPCR24)
          Length = 353

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 432 LSFLPLLRWA*DVIRFLDVPLLNHGVVGRLNSTAAFDLSYCSSLAVQLSST*HS 271
           + F  LL WA  V+    V LL +G +   NS+A  +  YCS  A +  S+ H+
Sbjct: 168 IDFCCLLCWAPHVLMNASVLLLVNGPLNSKNSSAKNNYGYCSYKASKRFSSLHA 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,585,676
Number of Sequences: 219361
Number of extensions: 1271620
Number of successful extensions: 3118
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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