ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (P... 35 0.14
2HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 33 0.54
3RFBE_SHIFL (P37781) Putative O-antigen transporter 31 2.1
4ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Ma... 30 4.6
5APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 30 4.6
6HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chai... 29 6.0
7MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell mu... 29 6.0

>PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (PAR-1)|
           (Thrombin receptor)
          Length = 420

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -1

Query: 240 HACMRTRAFAMAVRPLFLRIRCFDSLI*NCQNIL----YIQKQRQY*IISVLFSRYYFVR 73
           ++C +TRA  +AV  L + I CF        N+L    Y+Q+  ++     L+  Y    
Sbjct: 303 NSCKKTRALFLAVVVLCVFIICFGPT-----NVLFLTHYLQEANEF-----LYFAYILSA 352

Query: 72  ATSSISCCVLPFDYY 28
              S+SCC+ P  YY
Sbjct: 353 CVGSVSCCLDPLIYY 367



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 490 NAEVMCSHPGTTACPAADHDDYMFWDMLHPTHAT 389
           + + M +H   + C A+  + ++FWD+ HPT AT
Sbjct: 365 SVDYMYTHALRSECAASGAEKFVFWDVTHPTTAT 398



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>RFBE_SHIFL (P37781) Putative O-antigen transporter|
          Length = 418

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +3

Query: 78  RNNNVKITHLLSSTASVFECTRCFGSFKLNCQN---ILYVGREGVRPLQMHVCACMHA-C 245
           R+N+ + T ++S++ S      CFG+F L   +   + Y+   GV    + +   + A C
Sbjct: 69  RDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVEHSDIQLAFKLLAIC 128

Query: 246 MPSMVYSSATTILIAGDSFLPVTSVAKLTGSPYLGPLP 359
           +P  + +   + ++ GD    + ++ K   S  +  +P
Sbjct: 129 IPLFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIP 166



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>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix|
           glycoprotein SC1/ECM2)
          Length = 699

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  LHVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNI 179
           LH+ NN +KI  + S T   F C R + S  L  QNI
Sbjct: 665 LHLENNYIKIREIPSYT---FSCIRSYSSIVLKPQNI 698



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 493 LNAEVMCSHPGTTACPAADHDDYMFWDMLHPT 398
           L+A  +C    +  CP  +   Y+FWD +HPT
Sbjct: 484 LSAGALCKKSTSKICP--NTSSYLFWDGVHPT 513



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>HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chain)|
           (Beta-globin)
          Length = 147

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 75  VRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNILYVGRE 197
           +++NN    H     A++ ECTR FG+ K +  N+ ++  E
Sbjct: 54  IKHNNKVSAHGRKVLAAIIECTRHFGNIKGHLANLSHLHSE 94



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>MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell multimerin 1)|
            (EMILIN-4) (Elastin microfibril interface located protein
            4) (Elastin microfibril interfacer 4)
          Length = 1228

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 331  VNFATLVTGKNESPAIKMVVADE*TMDGMHACMHAHTCICNGRT 200
            VN  T++ G+ +     ++  +E +    H C +  TCI NGRT
Sbjct: 1019 VNLTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCI-NGRT 1061


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,273,408
Number of Sequences: 219361
Number of extensions: 1074812
Number of successful extensions: 3275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3269
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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