>UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB fusion protein|
           4)
          Length = 1483

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 398 QHPCGETLKRVFEFINDEKASALESKIKKQRVSEL 294
           QHP G TL  +   I      + ES  + +R+S+L
Sbjct: 141 QHPVGRTLPEILSMIGGRMERSAESSARNERISKL 175

>PRIM_CHLMU (Q9PLC9) DNA primase (EC 2.7.7.-)|
          Length = 600

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = +3

Query: 231 QQSYKYVGHLLFCVSSAHLHPQLRYSLLLDLGFQSR-CLLIINE-----LKYSLQCLPTW 392
           QQ Y +   +LF     H+   ++       G  S+ CL  IN+      +Y L CLP  
Sbjct: 75  QQGYSFSEAVLFLAKKFHVDLVIKTKTKESSGQDSKECLRRINKEAERFFQYCLLCLPEG 134

Query: 393 MLGLDLLHKRG 425
              L  L+KRG
Sbjct: 135 GEALSYLYKRG 145

>PDR1_YEAST (P12383) Transcription factor PDR1 (Pleiotropic drug resistance|
           protein 1)
          Length = 1063

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -1

Query: 505 DEKMDTDANVKGTRKGFDELQKLYPNLPLLWRRSRPSIHVGRH*REYLSSLMMRRHLL-- 332
           D K D D N  G  +   E Q    +L    +  +   H+G H    + S+ ++   L  
Sbjct: 146 DGKNDDDVNRNGFYEDDSESQATLTSLQTTLKNLKEMAHLGTHVTSAIESIELQISDLLK 205

Query: 331 -WNPRSRSKE 305
            W P+ R+KE
Sbjct: 206 RWEPKVRTKE 215

>TM50B_PONPY (Q5R4C3) Transmembrane protein 50B|
          Length = 158

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 122 ATVVAGYYFVYGWWWSADSYCLMPVP 45
           A+VVAG  F  GWW   D+  + P P
Sbjct: 26  ASVVAGILFFTGWWIMIDAAVVYPKP 51

>TM50B_MOUSE (Q9D1X9) Transmembrane protein 50B|
          Length = 158

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 122 ATVVAGYYFVYGWWWSADSYCLMPVP 45
           A+VVAG  F  GWW   D+  + P P
Sbjct: 26  ASVVAGILFFTGWWIMIDAAVVYPKP 51

>TM50B_HUMAN (P56557) Transmembrane protein 50B (HCV p7-transregulated protein|
           3)
          Length = 158

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 122 ATVVAGYYFVYGWWWSADSYCLMPVP 45
           A+VVAG  F  GWW   D+  + P P
Sbjct: 26  ASVVAGILFFTGWWIMIDAAVVYPKP 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,427,611
Number of Sequences: 219361
Number of extensions: 1629708
Number of successful extensions: 4404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4402
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)