>gb|BT016223.1| Zea mays clone Contig56 mRNA sequence
          Length = 1233

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 303 tactctttgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactc 362
           ||||||| ||||||||||||||||||||| | |   |||||||||||||  |||||||||
Sbjct: 835 tactcttagcttcttgatcttggattccagatcttctgccttctcatcagcaatgaactc 776

                                                                  
Query: 363 aaatactctcttcagtgtctccccacatggatgctgggcctggatctcctccaca 417
           ||||||||| ||||| || ||||| || ||||| |||| ||  ||||||||||||
Sbjct: 775 aaatactcttttcagagtttccccgcacggatgatgggtctcaatctcctccaca 721

>gb|AY111962.1| Zea mays CL10159_1 mRNA sequence
          Length = 998

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                       
Query: 303 tactctttgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactc 362
           ||||||| ||||||||||||||||||||| | |   || ||||||||||  |||||||||
Sbjct: 542 tactcttagcttcttgatcttggattccagatcttctggcttctcatcagcaatgaactc 601

                                                                  
Query: 363 aaatactctcttcagtgtctccccacatggatgctgggcctggatctcctccaca 417
                 ||| ||||| || |||||||| ||||| |||| ||  ||||||||||||
Sbjct: 602 nnnnnntcttttcagagtttccccacacggatgatgggtctcaatctcctccaca 656

>ref|XM_465004.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2197

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 310  tgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactcaaatact 369
            ||||||||||||||||||||||  |   | ||||| |||||| |||||||||||||  ||
Sbjct: 1747 tgcttcttgatcttggattccagggtgcaagccttatcatcactaatgaactcaaaagct 1688

                                              
Query: 370  ctcttcagtgtctccccacatggatgctgggcct 403
            ||||| |  ||    |||||||||||||||||||
Sbjct: 1687 ctcttgaaggttgatccacatggatgctgggcct 1654

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                            
Query: 310      tgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactcaaatact 369
                ||||||||||||||||||||||  |   | ||||| |||||| |||||||||||||  ||
Sbjct: 10871133 tgcttcttgatcttggattccagggtgcaagccttatcatcactaatgaactcaaaagct 10871074

                                                  
Query: 370      ctcttcagtgtctccccacatggatgctgggcct 403
                ||||| |  ||    |||||||||||||||||||
Sbjct: 10871073 ctcttgaaggttgatccacatggatgctgggcct 10871040

>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1756_H07
          Length = 217205

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                         
Query: 310   tgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactcaaatact 369
             ||||||||||||||||||||||  |   | ||||| |||||| |||||||||||||  ||
Sbjct: 77332 tgcttcttgatcttggattccagggtgcaagccttatcatcactaatgaactcaaaagct 77273

                                               
Query: 370   ctcttcagtgtctccccacatggatgctgggcct 403
             ||||| |  ||    |||||||||||||||||||
Sbjct: 77272 ctcttgaaggttgatccacatggatgctgggcct 77239

>dbj|AK102886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112K05, full
            insert sequence
          Length = 2197

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 310  tgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactcaaatact 369
            ||||||||||||||||||||||  |   | ||||| |||||| |||||||||||||  ||
Sbjct: 1747 tgcttcttgatcttggattccagggtgcaagccttatcatcactaatgaactcaaaagct 1688

                                              
Query: 370  ctcttcagtgtctccccacatggatgctgggcct 403
            ||||| |  ||    |||||||||||||||||||
Sbjct: 1687 ctcttgaaggttgatccacatggatgctgggcct 1654

>dbj|AK073147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022M16, full
           insert sequence
          Length = 1287

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                       
Query: 310 tgcttcttgatcttggattccaaagcagatgccttctcatcattaatgaactcaaatact 369
           ||||||||||||||||||||||  |   | ||||| |||||| |||||||||||||  ||
Sbjct: 930 tgcttcttgatcttggattccagggtgcaagccttatcatcactaatgaactcaaaagct 871

                                             
Query: 370 ctcttcagtgtctccccacatggatgctgggcct 403
           ||||| |  ||    |||||||||||||||||||
Sbjct: 870 ctcttgaaggttgatccacatggatgctgggcct 837

>gb|AC090786.6| Homo sapiens chromosome 8, clone RP11-381G11, complete sequence
          Length = 188274

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 509   agtttccccttccttcttaaa 529
             |||||||||||||||||||||
Sbjct: 10928 agtttccccttccttcttaaa 10908

>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence
          Length = 212494

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    actctttgcttcttgatctt 323
              ||||||||||||||||||||
Sbjct: 211586 actctttgcttcttgatctt 211567

>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    actctttgcttcttgatctt 323
              ||||||||||||||||||||
Sbjct: 163073 actctttgcttcttgatctt 163092

>gb|U41748.1| Caenorhabditis elegans cosmid C31H2, complete sequence
          Length = 40553

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 432   gggtacaatttctgcaattcatca 455
             |||| |||||||||||||||||||
Sbjct: 38108 gggttcaatttctgcaattcatca 38085

>gb|AY723816.1| Saccharomyces cerevisiae clone FLH003032.01X YGR140W gene, complete
            cds
          Length = 2871

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  ctctttgcttcttgatcttg 324
            ||||||||||||||||||||
Sbjct: 2507 ctctttgcttcttgatcttg 2488

>gb|AF049107.1| Myxococcus xanthus response regulator FrzZ (frzZ) gene, partial cds;
            alanine dehydrogenase (aldA), putative ECF sigma factor
            RpoE1 (rpoE1), and response regulator homolog (frzS)
            genes, complete cds; and unknown genes
          Length = 8046

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  ggcgcatctccatcctcaac 297
            ||||||||||||||||||||
Sbjct: 4988 ggcgcatctccatcctcaac 5007

>emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 in linkage group 2,
             complete sequence
          Length = 166899

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aaccataaacaaaataatag 105
             ||||||||||||||||||||
Sbjct: 71364 aaccataaacaaaataatag 71345

>gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosome 13, complete sequence
          Length = 143813

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    gttgacaacaacagaagggc 224
              ||||||||||||||||||||
Sbjct: 135419 gttgacaacaacagaagggc 135438

>gb|AC098878.3| Mus musculus BAC clone RP23-2G23 from 4, complete sequence
          Length = 209021

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gccttctcatcattaatgaa 359
             ||||||||||||||||||||
Sbjct: 54976 gccttctcatcattaatgaa 54995

>emb|CR457452.12| Zebrafish DNA sequence from clone DKEY-52H10 in linkage group 8, complete
              sequence
          Length = 232104

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aaccataaacaaaataatag 105
              ||||||||||||||||||||
Sbjct: 108613 aaccataaacaaaataatag 108594

>emb|AL844848.12| Mouse DNA sequence from clone RP23-247N5 on chromosome 4 Contains part
             of the Ptprd gene for receptor type protein tyrosine
             phosphatase D and a CpG island, complete sequence
          Length = 199012

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gccttctcatcattaatgaa 359
             ||||||||||||||||||||
Sbjct: 12366 gccttctcatcattaatgaa 12385

>emb|BX546452.9| Zebrafish DNA sequence from clone DKEYP-8B11 in linkage group 25,
             complete sequence
          Length = 170113

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aaccataaacaaaataatag 105
             ||||||||||||||||||||
Sbjct: 56108 aaccataaacaaaataatag 56127

>emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in linkage group 5,
             complete sequence
          Length = 142044

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aaccataaacaaaataatag 105
             ||||||||||||||||||||
Sbjct: 86195 aaccataaacaaaataatag 86214

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     ttggtcacctccttttttgt 269
               ||||||||||||||||||||
Sbjct: 3123237 ttggtcacctccttttttgt 3123256

>gb|AY553175.1| Odontotermes formosanus 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  accaaccataaacaaaataa 102
           ||||||||||||||||||||
Sbjct: 360 accaaccataaacaaaataa 341

>emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in linkage group 5, complete
              sequence
          Length = 195520

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aaccataaacaaaataatag 105
              ||||||||||||||||||||
Sbjct: 109654 aaccataaacaaaataatag 109635

>ref|NM_076474.1| Caenorhabditis elegans C31H2.4 (C31H2.4) mRNA, complete cds
          Length = 1095

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 432 gggtacaatttctgcaattcatca 455
           |||| |||||||||||||||||||
Sbjct: 3   gggttcaatttctgcaattcatca 26

>dbj|AK048570.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130078A05 product:unclassifiable, full
           insert sequence
          Length = 2902

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 gccttctcatcattaatgaa 359
           ||||||||||||||||||||
Sbjct: 667 gccttctcatcattaatgaa 648

>gb|AF262616.1|AF262616 Odontotermes formosanus 16S ribosomal RNA, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 828

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  accaaccataaacaaaataa 102
           ||||||||||||||||||||
Sbjct: 363 accaaccataaacaaaataa 344

>emb|AL132898.2|CEY59A8B Caenorhabditis elegans YAC Y59A8B, complete sequence
          Length = 174662

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   caatcggtttttcgcataaa 201
             ||||||||||||||||||||
Sbjct: 95529 caatcggtttttcgcataaa 95510

>emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in linkage group 19,
              complete sequence
          Length = 161014

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     aaccataaacaaaataatag 105
              ||||||||||||||||||||
Sbjct: 152529 aaccataaacaaaataatag 152548

>emb|BX000986.4| Zebrafish DNA sequence from clone CH211-210B19 in linkage group 19,
              complete sequence
          Length = 151501

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aaccataaacaaaataatag 105
              ||||||||||||||||||||
Sbjct: 106711 aaccataaacaaaataatag 106692

>emb|Z72925.1|SCYGR140W S.cerevisiae chromosome VII reading frame ORF YGR140w
          Length = 4504

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  ctctttgcttcttgatcttg 324
            ||||||||||||||||||||
Sbjct: 3871 ctctttgcttcttgatcttg 3852

>emb|Z21627.1|SCCBF2A S.cerevisiae CBF2 gene for 110 kd subunit of the centromere
            DNA-binding protein complex
          Length = 4129

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  ctctttgcttcttgatcttg 324
            ||||||||||||||||||||
Sbjct: 3266 ctctttgcttcttgatcttg 3247

>emb|X69300.1|SCNDC10 S.cerevisiae NDC10 gene
          Length = 4119

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  ctctttgcttcttgatcttg 324
            ||||||||||||||||||||
Sbjct: 3170 ctctttgcttcttgatcttg 3151

>emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in linkage group 25,
             complete sequence
          Length = 253422

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aaccataaacaaaataatag 105
             ||||||||||||||||||||
Sbjct: 68595 aaccataaacaaaataatag 68614

>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aaccataaacaaaataatag 105
             ||||||||||||||||||||
Sbjct: 85653 aaccataaacaaaataatag 85634

>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
              sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tcagatactctttgcttctt 317
              ||||||||||||||||||||
Sbjct: 150651 tcagatactctttgcttctt 150632

>emb|AL671988.15| Mouse DNA sequence from clone RP23-165J1 on chromosome X, complete
             sequence
          Length = 164068

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 379   gtctccccacatggatgctgggcctgga 406
             ||||| |||||||||| |||||||||||
Sbjct: 46950 gtctcaccacatggattctgggcctgga 46977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,732,903
Number of Sequences: 3902068
Number of extensions: 5732903
Number of successful extensions: 107817
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107695
Number of HSP's gapped (non-prelim): 120
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)