ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP11_ORYSA (P50156) Probable aquaporin TIP1.1 (Tonoplast intrin... 32 0.42
2S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute... 31 0.71
3TIP11_ARATH (P25818) Aquaporin TIP1.1 (Tonoplast intrinsic prote... 30 1.2
4TIP1_MEDTR (Q9FY14) Probable aquaporin TIP-type (MtAQP1) 30 1.2
5TIP1_MEDSA (P42067) Probable aquaporin TIP-type (Membrane channe... 30 1.2
6S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute c... 30 2.1
7POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein V... 30 2.1
8POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein V... 30 2.1
9SYE_SULTO (Q971D0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 4.6
10PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase ... 28 4.6
11PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate p... 28 4.6
12S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute... 28 6.0
13RECK_MOUSE (Q9Z0J1) Reversion-inducing cysteine-rich protein wit... 28 7.9
14RECK_HUMAN (O95980) Reversion-inducing cysteine-rich protein wit... 28 7.9
15POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein V... 28 7.9
16SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 7.9
17HMP_ERWCT (Q6D245) Flavohemoprotein (Hemoglobin-like protein) (F... 28 7.9

>TIP11_ORYSA (P50156) Probable aquaporin TIP1.1 (Tonoplast intrinsic protein|
           1.1) (OsTIP1.1) (rTIP1)
          Length = 250

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 284 FISRTHEQLPTTDY 243
           FIS THEQLPTTDY
Sbjct: 237 FISHTHEQLPTTDY 250



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>S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 704

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H  + S++ G+I TGF APQ   P
Sbjct: 314 GQLHTRFDSRVAGNIPTGFVAPQVPDP 340



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>TIP11_ARATH (P25818) Aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1)|
           (Gamma-tonoplast intrinsic protein) (Gamma-TIP)
           (Aquaporin-TIP) (Tonoplast intrinsic protein,
           root-specific RB7)
          Length = 251

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 284 FISRTHEQLPTTDY 243
           FI+ THEQLPTTDY
Sbjct: 238 FINTTHEQLPTTDY 251



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>TIP1_MEDTR (Q9FY14) Probable aquaporin TIP-type (MtAQP1)|
          Length = 250

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 284 FISRTHEQLPTTDY 243
           FI+ THEQLPTTDY
Sbjct: 237 FINSTHEQLPTTDY 250



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>TIP1_MEDSA (P42067) Probable aquaporin TIP-type (Membrane channel protein 1)|
           (MsMCP1)
          Length = 249

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 284 FISRTHEQLPTTDY 243
           FI+ THEQLPTTDY
Sbjct: 236 FINSTHEQLPTTDY 249



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>S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1) (Canalicular sulfate transporter)
           (Sulfate/carbonate antiporter)
          Length = 703

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H  + S + G+I TGF APQ   P
Sbjct: 313 GQLHTRFGSSVAGNIPTGFVAPQIPDP 339



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>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 223  PPPARPSVWSIASPLASSHESFKFALN 143
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 223  PPPARPSVWSIASPLASSHESFKFALN 143
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>SYE_SULTO (Q971D0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 566

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 59  KLTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKLKRLMTG 175
           K+ G  VT F AP  DGPI  GN   + I  K   +  G
Sbjct: 94  KVEGKFVTRF-APNPDGPIHLGNARAAIISYKYAEMYKG 131



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>PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase 2, cytoplasmic|
           (EC 3.1.1.47) (Serine-dependent phospholipase A2)
           (HSD-PLA2)
          Length = 392

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 32  GRIHRFYT--SKLTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKL 157
           G +HR  T  + +TG+++  F + +T G +DP  G +  +++ L
Sbjct: 311 GSVHRSQTDFAFVTGNLIGKFFSTETRGSLDPYEGQEVMVRAML 354



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>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
 Frame = -1

Query: 91   CETCDDRPCQ------------FTCVKPVNSSARVIS 17
            C TC DRPCQ            +TCV P   +A  ++
Sbjct: 3163 CPTCQDRPCQNGGQCQDSESSSYTCVCPAGFTAAAVN 3199



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>S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 701

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  GRIHRFYTSKLTGSIVTGFTAPQTDGP 112
           G++H+ + S + G I TGF  PQ   P
Sbjct: 309 GQLHKRFGSSVAGDIPTGFMPPQVPEP 335



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>RECK_MOUSE (Q9Z0J1) Reversion-inducing cysteine-rich protein with Kazal motifs|
           precursor (mRECK)
          Length = 971

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -1

Query: 217 PARPSVWSIASPLASSHESFKFALNE*IHPIPRVDRSISLWCCETCDDRPCQFTC 53
           P    + ++ +  AS        +N      P  + + SL+CC+  +D  CQ  C
Sbjct: 175 PGPSQIKAVENYCASISPQLIHCVNNYTQSYPMRNPTDSLYCCDRAEDHACQNAC 229



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>RECK_HUMAN (O95980) Reversion-inducing cysteine-rich protein with Kazal motifs|
           precursor (hRECK) (Suppressor of tumorigenicity 15)
           (ST15)
          Length = 971

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -1

Query: 217 PARPSVWSIASPLASSHESFKFALNE*IHPIPRVDRSISLWCCETCDDRPCQFTC 53
           P    + ++ +  AS        +N      P  + + SL+CC+  +D  CQ  C
Sbjct: 175 PGPSQIKAVENYCASISPQLIHCVNNYTQSYPMRNPTDSLYCCDRAEDHACQNAC 229



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>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2301

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 223  PPPARPSVWSIASPLASSHESFKFALN 143
            PPP  P+V     PL  ++E F FA N
Sbjct: 1178 PPPVCPNVLQPQGPLREANEGFTFAKN 1204



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>SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 567

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 62  LTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKLKRLMTG 175
           ++G +VT F AP  DGP+  GN   + I  +  R+  G
Sbjct: 96  VSGVLVTRF-APNPDGPLHLGNARAAIISHEYARIYNG 132



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>HMP_ERWCT (Q6D245) Flavohemoprotein (Hemoglobin-like protein)|
           (Flavohemoglobin) (Nitric oxide dioxygenase) (EC
           1.14.12.17) (NO oxygenase) (NOD)
          Length = 396

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 14  T*NYSGGRIHRFYTSKLTGSIVTGFTAPQTDG-PI---DPGNGMDSFIQ 148
           T  +SG R  R    +L  S++T FT   TDG PI    PG  +  +I+
Sbjct: 146 TGGWSGVRPFRIVNKQLQSSVITSFTLEPTDGQPIADFQPGQYLAIYIK 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,271,682
Number of Sequences: 219361
Number of extensions: 621424
Number of successful extensions: 1891
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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