ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 32 1.0
2PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate pho... 32 1.0
3NU5C_MARPO (P06264) NAD(P)H-quinone oxidoreductase chain 5, chlo... 30 3.0
4ACKA_CLOTS (Q59331) Acetate kinase (EC 2.7.2.1) (Acetokinase) 29 6.6

>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 359 HLCAAM-VPVFLTLMLSKRTIEPDRVSL---LQMWKISWREGGSKDSNTVDVK 213
           HLC ++ V   +TL  SK++  P+R +    L+  +I+W  G  K   ++D++
Sbjct: 24  HLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSRGADKIEGSIDIR 76



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>PLCG1_MOUSE (Q62077) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1302

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 359 HLCAAM-VPVFLTLMLSKRTIEPDRVSL---LQMWKISWREGGSKDSNTVDVK 213
           HLC ++ V   +TL  SK++  P+R +    L+  +I+W  G  K   ++D++
Sbjct: 24  HLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSRGADKIEGSIDIR 76



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>NU5C_MARPO (P06264) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 692

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 117 YSDGYYFYTSGYIMKNTYLLLFRRS*NCSIIIFDIYRVAIF 239
           YSD Y FY  GYI    YL LF  S    ++  ++ +V IF
Sbjct: 110 YSDSYMFYDEGYIKFFCYLSLFTASMLGLVLSPNLIQVYIF 150



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>ACKA_CLOTS (Q59331) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 400

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +3

Query: 198 CSIIIFDIYRVAIFGTAFSPTDLPHLE*AYPVRFNCPL*QHKSQENRYHRST*MFKSMSA 377
           C+ I+ D+  VA+F TAF  T +P     YP+ +     ++K ++  +H ++  + S  A
Sbjct: 133 CTQIMPDVPMVAVFDTAFHQT-MPDYAYLYPIPYEYYT-KYKIRKYGFHGTSHKYVSQRA 190

Query: 378 NNVMCPPI 401
             ++  PI
Sbjct: 191 AEILNKPI 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,980,640
Number of Sequences: 219361
Number of extensions: 1580727
Number of successful extensions: 3211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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