ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506824.1| PREDICTED Oryza sativa (japonica cultivar-group... 212 8e-52
2ref|XM_466201.1| Oryza sativa (japonica cultivar-group), mRNA 212 8e-52
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
4dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
5dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
6dbj|AK100703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 8e-52
7dbj|AK072247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 8e-52
8gb|BT016776.1| Zea mays clone Contig609 mRNA sequence 127 3e-26
9gb|AY112441.1| Zea mays CL24193_1 mRNA sequence 86 1e-13
10gb|AF134289.1|AF134289 Phanerochaete chrysosporium strain BKM-F-... 44 0.40
11ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB5-B) ... 42 1.6
12ref|NM_124257.2| Arabidopsis thaliana protein binding / signal t... 42 1.6
13ref|XM_476900.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
15gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 42 1.6
16gb|DQ396876.1| Carollia perspicillata paired-related homeobox 1 ... 42 1.6
17gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 42 1.6
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20emb|BX830207.1|CNS0A06S Arabidopsis thaliana Full-length cDNA Co... 42 1.6
21dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AK117251.1| Arabidopsis thaliana At5g48800 mRNA for non-phot... 42 1.6
23dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.6
24dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
25dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
26dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C ... 42 1.6
29gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.3
30gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
31ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) ... 40 6.3
32gb|AC024201.1| Caenorhabditis elegans cosmid Y71F9B, complete se... 40 6.3
33gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.3
34emb|AL023807.6|HS525L6 Human DNA sequence from clone RP3-525L6 o... 40 6.3
35emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 6.3
36emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in ... 40 6.3
37dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 40 6.3
38gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra m... 40 6.3
39gb|AC024854.1|AC024854 Caenorhabditis elegans clone Y71F9B, comp... 40 6.3
40gb|AY871784.1| Saccharopolyspora erythraea ribonuclease St gene,... 40 6.3
41emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, c... 40 6.3
42gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-... 40 6.3 
>ref|XM_506824.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470G10.34 mRNA
          Length = 2410

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                        
Query: 286  gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
            |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 1917 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 1858

                                                                        
Query: 346  ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
            ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 1857 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 1798

                                                                       
Query: 406  ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
              | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1797 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 1739



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 209  ttggcgaagaggccgccgaaggagaagaagctggtc 244
            ||||||||||||  ||||||||||||||||||||||
Sbjct: 2039 ttggcgaagaggttgccgaaggagaagaagctggtc 2004
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>ref|XM_466201.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2240

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                        
Query: 286  gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
            |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 1819 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 1760

                                                                        
Query: 346  ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
            ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 1759 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 1700

                                                                       
Query: 406  ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
              | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1699 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 1641



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 209  ttggcgaagaggccgccgaaggagaagaagctggtc 244
            ||||||||||||  ||||||||||||||||||||||
Sbjct: 1941 ttggcgaagaggttgccgaaggagaagaagctggtc 1906
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                            
Query: 286      gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
                |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 21013125 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 21013066

                                                                            
Query: 346      ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
                ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 21013065 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 21013006

                                                                           
Query: 406      ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
                  | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 21013005 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 21012947



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 209      ttggcgaagaggccgccgaaggagaagaagctggtc 244
                ||||||||||||  ||||||||||||||||||||||
Sbjct: 21013247 ttggcgaagaggttgccgaaggagaagaagctggtc 21013212
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470G10
          Length = 145419

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                          
Query: 286    gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
              |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 136597 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 136538

                                                                          
Query: 346    ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
              ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 136537 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 136478

                                                                         
Query: 406    ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
                | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 136477 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 136419



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 209    ttggcgaagaggccgccgaaggagaagaagctggtc 244
              ||||||||||||  ||||||||||||||||||||||
Sbjct: 136719 ttggcgaagaggttgccgaaggagaagaagctggtc 136684
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>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                         
Query: 286   gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
             |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 14870 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 14811

                                                                         
Query: 346   ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
             ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 14810 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 14751

                                                                        
Query: 406   ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
               | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 14750 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 14692



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 209   ttggcgaagaggccgccgaaggagaagaagctggtc 244
             ||||||||||||  ||||||||||||||||||||||
Sbjct: 14992 ttggcgaagaggttgccgaaggagaagaagctggtc 14957
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>dbj|AK100703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114O09, full
            insert sequence
          Length = 2410

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                        
Query: 286  gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
            |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 1917 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 1858

                                                                        
Query: 346  ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
            ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 1857 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 1798

                                                                       
Query: 406  ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
              | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1797 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 1739



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 209  ttggcgaagaggccgccgaaggagaagaagctggtc 244
            ||||||||||||  ||||||||||||||||||||||
Sbjct: 2039 ttggcgaagaggttgccgaaggagaagaagctggtc 2004
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>dbj|AK072247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N03, full
            insert sequence
          Length = 2240

 Score =  212 bits (107), Expect = 8e-52
 Identities = 161/179 (89%)
 Strand = Plus / Minus

                                                                        
Query: 286  gggcaccttcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgat 345
            |||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||
Sbjct: 1819 gggcaccttcttgacgttgagcatgacggtgtggccgacctggacgcggaggccctcgat 1760

                                                                        
Query: 346  ggtcttcatgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctg 405
            ||||||||||||||||||||  || || |||||||| |||||||| ||||| ||||||||
Sbjct: 1759 ggtcttcatgtccaccggctcgccggaggcgtcgcggacgtagaagacgttgatggcctg 1700

                                                                       
Query: 406  ctcccccaccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccc 464
              | || |||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1699 gccgccgaccgtcgtgacgtcggccctcgtcaccgtcaggccgtgctccctgagcaccc 1641



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 209  ttggcgaagaggccgccgaaggagaagaagctggtc 244
            ||||||||||||  ||||||||||||||||||||||
Sbjct: 1941 ttggcgaagaggttgccgaaggagaagaagctggtc 1906
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>gb|BT016776.1| Zea mays clone Contig609 mRNA sequence
          Length = 1943

 Score =  127 bits (64), Expect = 3e-26
 Identities = 145/172 (84%)
 Strand = Plus / Minus

                                                                        
Query: 294  tcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgatggtcttca 353
            ||||||||||||||||| |||||||||| | ||| |||| ||| ||||||| ||||||||
Sbjct: 1540 tcttgacgttgagcatggcggtctggccaaactggcccctgagcccctcgacggtcttca 1481

                                                                        
Query: 354  tgtccaccggctgccccgacgcgtcgcgcacgtagaatacgttcatggcctgctccccca 413
            ||||||| ||||| ||||| | ||  || |||||||| |||||  |||||||| | ||| 
Sbjct: 1480 tgtccactggctggcccgaggggttccggacgtagaagacgtttgtggcctgcccgcccg 1421

                                                                
Query: 414  ccgtcgtcacgtcggccctcgtcaccgtcaggccgtgctcccggagaaccct 465
            |||||||||||||||| |   ||||||| || |||||||||||||| |||||
Sbjct: 1420 ccgtcgtcacgtcggcgcggctcaccgtgagcccgtgctcccggagcaccct 1369



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 212  gcgaagaggccgccgaaggagaagaagctggtcttggccatgctgcc 258
            |||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct: 1634 gcgaagaggctgccgaaggagaagaagctgctcctgaccatgctgcc 1588
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>gb|AY112441.1| Zea mays CL24193_1 mRNA sequence
          Length = 580

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                       
Query: 294 tcttgacgttgagcatgacggtctggccgacctgtccccggaggccctcgatggtcttca 353
           ||||||||||||||||| |||||||||| | ||| |||| ||| ||||||| ||||||||
Sbjct: 343 tcttgacgttgagcatggcggtctggccaaactggcccctgagcccctcgacggtcttca 402

                              
Query: 354 tgtccaccggctgccccga 372
           ||||||| ||||| |||||
Sbjct: 403 tgtccactggctggcccga 421



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 212 gcgaagaggccgccgaaggagaagaagctggtcttggccatgctgcc 258
           |||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct: 249 gcgaagaggctgccgaaggagaagaagctgctcctgaccatgctgcc 295
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>gb|AF134289.1|AF134289 Phanerochaete chrysosporium strain BKM-F-1767 Pce2 sequence
          Length = 4035

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 216 agaggccgccgaaggagaagaagctg 241
           |||||||||||||| |||||||||||
Sbjct: 209 agaggccgccgaagaagaagaagctg 184
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>ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB5-B) mRNA, complete cds
          Length = 1119

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 74  tcaaagaaaatggggaaactt 94
           |||||||||||||||||||||
Sbjct: 903 tcaaagaaaatggggaaactt 883
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>ref|NM_124257.2| Arabidopsis thaliana protein binding / signal transducer AT5G48800
            mRNA, complete cds
          Length = 2466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   tcaaagaaaatggggaaactt 94
            |||||||||||||||||||||
Sbjct: 1834 tcaaagaaaatggggaaactt 1854
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>ref|XM_476900.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1174

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 aggccgccgaaggagaagaag 238
           |||||||||||||||||||||
Sbjct: 243 aggccgccgaaggagaagaag 263
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 60       ttctccgttaaaattcaaaga 80
                |||||||||||||||||||||
Sbjct: 30215667 ttctccgttaaaattcaaaga 30215647



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       tctccgttaaaattcaaaga 80
                ||||||||||||||||||||
Sbjct: 22248854 tctccgttaaaattcaaaga 22248873
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>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
            sequence
          Length = 163972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   ttctccgttaaaattcaaaga 80
            |||||||||||||||||||||
Sbjct: 8228 ttctccgttaaaattcaaaga 8248
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>gb|DQ396876.1| Carollia perspicillata paired-related homeobox 1 (Prx1) gene, exon 1
            and partial cds
          Length = 17257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   ggggaaacttgttggagaaaa 105
            |||||||||||||||||||||
Sbjct: 3422 ggggaaacttgttggagaaaa 3402
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence,
            complete sequence
          Length = 130359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 60   ttctccgttaaaattcaaaga 80
            |||||||||||||||||||||
Sbjct: 7347 ttctccgttaaaattcaaaga 7327
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 218     aggccgccgaaggagaagaag 238
               |||||||||||||||||||||
Sbjct: 4515844 aggccgccgaaggagaagaag 4515864
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 60       ttctccgttaaaattcaaaga 80
                |||||||||||||||||||||
Sbjct: 30307089 ttctccgttaaaattcaaaga 30307069



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       tctccgttaaaattcaaaga 80
                ||||||||||||||||||||
Sbjct: 22241883 tctccgttaaaattcaaaga 22241902
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>emb|BX830207.1|CNS0A06S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB66ZB01 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1985

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   tcaaagaaaatggggaaactt 94
            |||||||||||||||||||||
Sbjct: 1828 tcaaagaaaatggggaaactt 1848
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>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1046_F10
          Length = 118472

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   aggccgccgaaggagaagaag 238
             |||||||||||||||||||||
Sbjct: 94563 aggccgccgaaggagaagaag 94583
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>dbj|AK117251.1| Arabidopsis thaliana At5g48800 mRNA for non-phototropic
            hypocotyl-like protein, complete cds, clone:
            RAFL16-80-M11
          Length = 1966

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   tcaaagaaaatggggaaactt 94
            |||||||||||||||||||||
Sbjct: 1762 tcaaagaaaatggggaaactt 1782
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>dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24G6
          Length = 78973

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    tcaaagaaaatggggaaactt 94
             |||||||||||||||||||||
Sbjct: 43912 tcaaagaaaatggggaaactt 43932
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>dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F12, full
           insert sequence
          Length = 1174

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 aggccgccgaaggagaagaag 238
           |||||||||||||||||||||
Sbjct: 243 aggccgccgaaggagaagaag 263
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>dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100F04, full
           insert sequence
          Length = 1175

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 aggccgccgaaggagaagaag 238
           |||||||||||||||||||||
Sbjct: 244 aggccgccgaaggagaagaag 264
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>dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148D20, full
           insert sequence
          Length = 1175

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 aggccgccgaaggagaagaag 238
           |||||||||||||||||||||
Sbjct: 244 aggccgccgaaggagaagaag 264
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>dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full
           insert sequence
          Length = 1177

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 218 aggccgccgaaggagaagaag 238
           |||||||||||||||||||||
Sbjct: 246 aggccgccgaaggagaagaag 266
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>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 59    tttctccgttaaaattcaaagaaaa 83
             ||||||||||||||| |||||||||
Sbjct: 67867 tttctccgttaaaatgcaaagaaaa 67891
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     ccgccgaaggagaagaagctggtc 244
               |||||||| |||||||||||||||
Sbjct: 6357949 ccgccgaacgagaagaagctggtc 6357926
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>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015G17, complete sequence
          Length = 158173

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tctccgttaaaattcaaaga 80
             ||||||||||||||||||||
Sbjct: 99964 tctccgttaaaattcaaaga 99945
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>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     cgttaaaattcaaagaaaat 84
              ||||||||||||||||||||
Sbjct: 251799 cgttaaaattcaaagaaaat 251780
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>gb|AC024201.1| Caenorhabditis elegans cosmid Y71F9B, complete sequence
          Length = 83297

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    aaatggggaaacttgttggagaaa 104
             |||||||| |||||||||||||||
Sbjct: 41066 aaatggggcaacttgttggagaaa 41089
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     ggcaccttcttgacgttgag 306
               ||||||||||||||||||||
Sbjct: 2132153 ggcaccttcttgacgttgag 2132172
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>emb|AL023807.6|HS525L6 Human DNA sequence from clone RP3-525L6 on chromosome 6p22.3-23
             Contains the 5' end of a gene for a kinesin-like protein
             (RBKIN) protein, a ribosomal protein S12 (RPS12)
             pseudogene and a CpG Island, complete sequence
          Length = 168111

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   agaaaatacaccaagagctg 119
             ||||||||||||||||||||
Sbjct: 68629 agaaaatacaccaagagctg 68610
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aaacttgttggagaaaatac 108
             ||||||||||||||||||||
Sbjct: 84786 aaacttgttggagaaaatac 84767
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>emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in linkage group 16,
             complete sequence
          Length = 250962

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tgttgttttacatataaagc 47
             ||||||||||||||||||||
Sbjct: 22498 tgttgttttacatataaagc 22479
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>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  tcttggccatgctgccacca 262
            ||||||||||||||||||||
Sbjct: 9952 tcttggccatgctgccacca 9933
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>gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra megalomicin biosynthetic gene
             cluster, partial sequence
          Length = 47981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 316   ctggccgacctgtccccggaggcc 339
             ||||||||||||| ||||||||||
Sbjct: 21877 ctggccgacctgtgcccggaggcc 21900
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>gb|AC024854.1|AC024854 Caenorhabditis elegans clone Y71F9B, complete sequence
          Length = 83297

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    aaatggggaaacttgttggagaaa 104
             |||||||| |||||||||||||||
Sbjct: 41066 aaatggggcaacttgttggagaaa 41089
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>gb|AY871784.1| Saccharopolyspora erythraea ribonuclease St gene, partial cds
          Length = 493

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 316 ctggccgacctgtccccggaggcc 339
           |||||||||||| |||||||||||
Sbjct: 109 ctggccgacctgcccccggaggcc 132
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>emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, complete sequence
          Length = 149603

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tgttgttttacatataaagc 47
              ||||||||||||||||||||
Sbjct: 149116 tgttgttttacatataaagc 149135
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>gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-beta-hydroxylase-like,
              TRY1, TRY2, TRY3, TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T,
              TCRBV7S1A1N2T, TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P,
              TCRBV7S3A2T, TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T,
              TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1,
              TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P,
              TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P,
              TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from
              bases 1 to 267156 (section 1 of 3)
          Length = 267156

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     cgttaaaattcaaagaaaat 84
              ||||||||||||||||||||
Sbjct: 251799 cgttaaaattcaaagaaaat 251780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,730,543
Number of Sequences: 3902068
Number of extensions: 3730543
Number of successful extensions: 73864
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73532
Number of HSP's gapped (non-prelim): 332
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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