ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30c03 |
|---|---|
| Clone Library Name | barley_pub |
>OPR1_LYCES (Q9XG54) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (LeOPR1) Length = 376 Score = 137 bits (345), Expect = 1e-32 Identities = 61/96 (63%), Positives = 76/96 (79%) Frame = -1 Query: 467 PRMAIVDGRTQIPHGLLPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANP 288 PRM + + L+P RKA+ GTFI AGGYDRE+GN+ + +D ADLVAYGR+F++NP Sbjct: 278 PRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNP 337 Query: 287 DFPKRFELNSALNKYDRNTFYTQDPIVGYTNYPFFE 180 D PKRFELN+ LNKY+R+TFYT DPIVGYT+YPF E Sbjct: 338 DLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373
>OPR1_ARATH (Q8LAH7) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (AtOPR1) (FS-AT-I) Length = 372 Score = 129 bits (323), Expect = 5e-30 Identities = 57/86 (66%), Positives = 70/86 (81%) Frame = -1 Query: 431 PHGLLPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSAL 252 PH L+P RKAF GTFI+AGG+ RE+GN+ V+ DLVAYGR FLANPD PKRF++++ L Sbjct: 286 PHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPL 345 Query: 251 NKYDRNTFYTQDPIVGYTNYPFFEGS 174 NKYDR TFYT DP+VGYT+YPF E + Sbjct: 346 NKYDRPTFYTSDPVVGYTDYPFLEST 371
>OPRL_LYCES (Q9FEX0) 12-oxophytodienoate reductase-like protein (EC 1.3.1.-)| (LeOPR2) Length = 355 Score = 129 bits (323), Expect = 5e-30 Identities = 54/92 (58%), Positives = 74/92 (80%) Frame = -1 Query: 455 IVDGRTQIPHGLLPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPK 276 +++ R + LLP RKAF GT IA+GGY + +G K + ++YADL+++GR+FLANPD PK Sbjct: 261 VMEPRETVNRSLLPIRKAFKGTLIASGGYGKSDGEKAIDENYADLISFGRMFLANPDLPK 320 Query: 275 RFELNSALNKYDRNTFYTQDPIVGYTNYPFFE 180 RFE+N+ LNKY+R+TFYT DPI+GYT+YPF E Sbjct: 321 RFEVNAPLNKYNRSTFYTNDPIIGYTDYPFLE 352
>OPR2_ARATH (Q8GYB8) 12-oxophytodienoate reductase 2 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 2) (OPDA-reductase 2) (AtOPR2) Length = 374 Score = 127 bits (318), Expect = 2e-29 Identities = 59/98 (60%), Positives = 73/98 (74%) Frame = -1 Query: 467 PRMAIVDGRTQIPHGLLPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANP 288 PRM V H L+P R+AF GTFI+AGG+ RE+GN+ VA DLVAYGR FLANP Sbjct: 276 PRMKTVGEIAACSHTLMPMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANP 335 Query: 287 DFPKRFELNSALNKYDRNTFYTQDPIVGYTNYPFFEGS 174 D PKRF+L++ LNKY+R+TFYT DP+VGYT+YP E + Sbjct: 336 DLPKRFQLDAPLNKYNRSTFYTSDPVVGYTDYPSLEST 373
>OPR3_LYCES (Q9FEW9) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) Length = 396 Score = 109 bits (272), Expect = 4e-24 Identities = 48/81 (59%), Positives = 63/81 (77%) Frame = -1 Query: 410 RKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSALNKYDRNT 231 R A+ GTFI +GGY RE G + VA ADLV+YGR+F++NPD R +LN+ LNKY+R T Sbjct: 309 RNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKT 368 Query: 230 FYTQDPIVGYTNYPFFEGSNA 168 FYTQDP+VGYT+YPF +G+ + Sbjct: 369 FYTQDPVVGYTDYPFLQGNGS 389
>OPR3_ARATH (Q9FUP0) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (Delayed dehiscence 1) (AtOPR3) Length = 391 Score = 102 bits (253), Expect = 6e-22 Identities = 43/75 (57%), Positives = 61/75 (81%) Frame = -1 Query: 410 RKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSALNKYDRNT 231 R A++GTF+++GG+++E G + V ADLV+YGR+F+ANPD RF+++ LNKY+R T Sbjct: 310 RMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKT 369 Query: 230 FYTQDPIVGYTNYPF 186 FYTQDP+VGYT+YPF Sbjct: 370 FYTQDPVVGYTDYPF 384
>OPRL1_ARATH (Q8GYA3) Putative 12-oxophytodienoate reductase-like protein 1 (EC| 1.3.1.-) Length = 324 Score = 97.1 bits (240), Expect = 2e-20 Identities = 47/74 (63%), Positives = 53/74 (71%) Frame = -1 Query: 467 PRMAIVDGRTQIPHGLLPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANP 288 PRM V + L P R AF+GTFI AGGY RE+GNK VA+ DLVAYGR+FLANP Sbjct: 251 PRMKTVSEIFECRESLTPMRNAFNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRLFLANP 310 Query: 287 DFPKRFELNSALNK 246 D PKRFELN+ LNK Sbjct: 311 DLPKRFELNAPLNK 324
>OYEB_SCHPO (Q09671) Putative NADPH dehydrogenase C5H10.10 (EC 1.6.99.1) (Old| yellow enzyme homolog) Length = 392 Score = 71.2 bits (173), Expect = 1e-12 Identities = 36/78 (46%), Positives = 50/78 (64%) Frame = -1 Query: 419 LPFRKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSALNKYD 240 L ++ + FI AGG+DR+ ++ A+ LVA+GR FL+NPD P R + N LNK+D Sbjct: 305 LIYKNLWGDPFITAGGHDRDSAIQM-AEQENTLVAFGRYFLSNPDLPFRLKYNLPLNKWD 363 Query: 239 RNTFYTQDPIVGYTNYPF 186 R TFYT+ GY +YPF Sbjct: 364 RATFYTKMSPKGYIDYPF 381
>OYEA_SCHPO (Q09670) Putative NADPH dehydrogenase C5H10.04 (EC 1.6.99.1) (Old| yellow enzyme homolog) Length = 382 Score = 66.6 bits (161), Expect = 3e-11 Identities = 35/75 (46%), Positives = 48/75 (64%) Frame = -1 Query: 410 RKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSALNKYDRNT 231 +K + G FI AGGYD E + A++ LVA+GR F+ANPD R + + LNK+DR++ Sbjct: 301 QKYWKGPFITAGGYDPETAVQA-ANERGVLVAFGRNFIANPDLVFRIKHHIPLNKWDRSS 359 Query: 230 FYTQDPIVGYTNYPF 186 FY GYT+YPF Sbjct: 360 FYLPKTEKGYTDYPF 374
>OYE3_YEAST (P41816) NADPH dehydrogenase 3 (EC 1.6.99.1) (Old yellow enzyme 3)| Length = 399 Score = 61.2 bits (147), Expect = 1e-09 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Frame = -1 Query: 458 AIVDGRTQIPHGLLPFRKA-FDGTFIAAGGYDREEGNKVVADDYAD---LVAYGRIFLAN 291 ++V+G + G F + + G I AG Y +VV + D L+ YGR F++N Sbjct: 296 SLVEGEGEYSEGTNDFAYSIWKGPIIRAGNYALHP--EVVREQVKDPRTLIGYGRFFISN 353 Query: 290 PDFPKRFELNSALNKYDRNTFYTQDPIVGYTNYPFFE 180 PD R E LNKYDR+TFYT GYT+YP +E Sbjct: 354 PDLVYRLEEGLPLNKYDRSTFYTMS-AEGYTDYPTYE 389
>OYE2_YEAST (Q03558) NADPH dehydrogenase 2 (EC 1.6.99.1) (Old yellow enzyme 2)| Length = 399 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = -1 Query: 395 GTFIAAGGYDREEGNKVVADDYAD---LVAYGRIFLANPDFPKRFELNSALNKYDRNTFY 225 G I AG + +VV ++ D L+ YGR F++NPD R E LNKYDR+TFY Sbjct: 318 GPIIRAGNFALHP--EVVREEVKDPRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY 375 Query: 224 TQDPIVGYTNYPFFE 180 GY +YP +E Sbjct: 376 KMS-AEGYIDYPTYE 389
>OYE1_SACPS (Q02899) NADPH dehydrogenase 1 (EC 1.6.99.1) (Old yellow enzyme 1)| Length = 399 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = -1 Query: 395 GTFIAAGGYDREEGNKVVADDYAD---LVAYGRIFLANPDFPKRFELNSALNKYDRNTFY 225 G I AG + +VV ++ D L+ YGR F++NPD R E LNKYDR+TFY Sbjct: 318 GPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY 375 Query: 224 TQDPIVGYTNYPFFE 180 Q GY +YP +E Sbjct: 376 -QMSAHGYIDYPTYE 389
>KYE1_KLULA (P40952) NADPH dehydrogenase 1 (EC 1.6.99.1) (Old yellow enzyme 1)| Length = 398 Score = 52.4 bits (124), Expect = 6e-07 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 19/119 (15%) Frame = -1 Query: 464 RMAIVDGRTQIPHGLLPFRKAFDGTFIAAGG-----YDREEGNKVVADDYA--------- 327 R+A VD P PF+ F+G + GG Y +GN + +YA Sbjct: 281 RLAYVD--LVEPRVTSPFQPEFEGWY--KGGTNEFVYSVWKGNVLRVGNYALDPDAAITD 336 Query: 326 -----DLVAYGRIFLANPDFPKRFELNSALNKYDRNTFYTQDPIVGYTNYPFFEGSNAE 165 L+ YGR F+ANPD +R E LN+YDR +FY GY +YP +E + A+ Sbjct: 337 SKNPNTLIGYGRAFIANPDLVERLEKGLPLNQYDRPSFYKMS-AEGYIDYPTYEEAVAK 394
>NEMA_ECOLI (P77258) N-ethylmaleimide reductase (EC 1.-.-.-) (N-ethylmaleimide| reducing enzyme) Length = 365 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/74 (36%), Positives = 37/74 (50%) Frame = -1 Query: 410 RKAFDGTFIAAGGYDREEGNKVVADDYADLVAYGRIFLANPDFPKRFELNSALNKYDRNT 231 R F G I AG Y E+ ++ D VA+GR ++ANPD R + + LN + Sbjct: 291 RARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAES 350 Query: 230 FYTQDPIVGYTNYP 189 FY GYT+YP Sbjct: 351 FY-GGGAEGYTDYP 363
>EBP1_CANAL (P43084) Probable NADPH dehydrogenase (EC 1.6.99.1)| (Estrogen-binding protein) (EBP) Length = 406 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = -1 Query: 407 KAFDGTFIAAGGY--DREEGNKVVADDYAD--LVAYGRIFLANPDFPKRFELNSALNKYD 240 K + G FI AG Y D E ++ D D ++ + R F +NPD ++ +L LN Y+ Sbjct: 319 KIWKGNFIRAGNYTYDAPEFKTLINDLKNDRSIIGFSRFFTSNPDLVEKLKLGKPLNYYN 378 Query: 239 RNTFYTQDPIVGYTNY 192 R FY GY +Y Sbjct: 379 REEFYKYYN-YGYNSY 393
>NADO_THEBR (P32382) NADH oxidase (EC 1.-.-.-)| Length = 651 Score = 32.0 bits (71), Expect = 0.80 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -1 Query: 362 EEGNKVVADDYADLVAYGRIFLANPDFPKR 273 E K++A+ AD VA GR +A+P++PK+ Sbjct: 303 EFAEKIIAEGRADFVAVGRGLIADPEWPKK 332
>Y31K_SSV1 (P20203) Hypothetical 31.5 kDa protein (ORF B-277)| Length = 277 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 261 IELESLRKIWISQKDPSISNEISIVVGNHFVAFLSVIPS 377 +E++ LRK W+ +P + + G FVA V+P+ Sbjct: 129 LEVKKLRKAWVLTAEPILLERLKFPFGKKFVAVHFVLPN 167
>ALX_ECOLI (P42601) Protein alx| Length = 321 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = -2 Query: 400 LTALSLLLEG------MTERKATKWLPTTMLISLLMEGSFW--LIQIFLRDSSSIQP*TS 245 + A+ LLL+G MT ++A W + +SLL +FW L+Q R + Q Sbjct: 20 MLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAF 79 Query: 244 TTATLFIRKIL--SLATQIILFLKAQTPSSLSTR 149 T L + + ++ ++LF P++L R Sbjct: 80 LTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRR 113
>ALX_ECOL6 (Q8FDE1) Protein alx| Length = 321 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = -2 Query: 400 LTALSLLLEG------MTERKATKWLPTTMLISLLMEGSFW--LIQIFLRDSSSIQP*TS 245 + A+ LLL+G MT ++A W + +SLL +FW L+Q R + Q Sbjct: 20 MLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAF 79 Query: 244 TTATLFIRKIL--SLATQIILFLKAQTPSSLSTR 149 T L + + ++ ++LF P++L R Sbjct: 80 LTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRR 113
>ALX_ECO57 (Q8XAJ0) Protein alx| Length = 321 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = -2 Query: 400 LTALSLLLEG------MTERKATKWLPTTMLISLLMEGSFW--LIQIFLRDSSSIQP*TS 245 + A+ LLL+G MT ++A W + +SLL +FW L+Q R + Q Sbjct: 20 MLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAF 79 Query: 244 TTATLFIRKIL--SLATQIILFLKAQTPSSLSTR 149 T L + + ++ ++LF P++L R Sbjct: 80 LTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRR 113
>ALX_SHIFL (Q83Q35) Protein alx| Length = 320 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = -2 Query: 400 LTALSLLLEG------MTERKATKWLPTTMLISLLMEGSFW--LIQIFLRDSSSIQP*TS 245 + A+ LLL+G MT ++A W + +SLL +FW L+Q R + Q Sbjct: 20 MLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAF 79 Query: 244 TTATLFIRKIL--SLATQIILFLKAQTPSSLSTR 149 T L + + ++ ++LF P++L R Sbjct: 80 LTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRR 113
>GLYA_PSYAR (Q4FUZ8) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 418 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 439 RKYPTGSCPSEKHLTALSLLLEGMTERKATKWL 341 R Y S +E HL +SL+ + MT ++A KWL Sbjct: 303 RGYEIISGGTENHLMLISLVKQEMTGKEADKWL 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,916,652 Number of Sequences: 219361 Number of extensions: 1432795 Number of successful extensions: 3760 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3759 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
