ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_798713.1| Trypanosoma brucei TREU927 hypothetical protein... 38 0.95
2gb|AC131100.3| Mus musculus BAC clone RP23-43H7 from chromosome ... 38 0.95
3gb|AC124723.4| Mus musculus BAC clone RP23-396P3 from chromosome... 38 0.95
4gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 36 3.8
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.8
6gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 36 3.8

>ref|XM_798713.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.3560)
           partial mRNA
          Length = 1356

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  ataatcatttcgctcttta 29
           |||||||||||||||||||
Sbjct: 414 ataatcatttcgctcttta 396



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>gb|AC131100.3| Mus musculus BAC clone RP23-43H7 from chromosome 14, complete sequence
          Length = 200247

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    aatcatttcgctctttaca 31
             |||||||||||||||||||
Sbjct: 54487 aatcatttcgctctttaca 54505



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>gb|AC124723.4| Mus musculus BAC clone RP23-396P3 from chromosome 14, complete sequence
          Length = 187353

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     aatcatttcgctctttaca 31
              |||||||||||||||||||
Sbjct: 150187 aatcatttcgctctttaca 150205



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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 12     taatcatttcgctcttta 29
              ||||||||||||||||||
Sbjct: 122665 taatcatttcgctcttta 122648



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 12      taatcatttcgctcttta 29
               ||||||||||||||||||
Sbjct: 4754660 taatcatttcgctcttta 4754643



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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    taatcatttcgctcttta 29
             ||||||||||||||||||
Sbjct: 27068 taatcatttcgctcttta 27051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,664
Number of Sequences: 3902068
Number of extensions: 70664
Number of successful extensions: 11539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11526
Number of HSP's gapped (non-prelim): 13
length of query: 37
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 17
effective length of database: 17,155,003,908
effective search space: 291635066436
effective search space used: 291635066436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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