Clone Name | rbart30b09 |
---|---|
Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 59.7 bits (143), Expect = 4e-09 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 13/106 (12%) Frame = -1 Query: 448 NEPARYGFSASSGLHVCCGAGGPYNYNMTAACG---------LPGVSACDNPATHINWDG 296 +EP ++GF L CCG GG YN+++TA CG V +C P+ +NWDG Sbjct: 291 SEPEKHGFEFP--LITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDG 348 Query: 295 IHLTESA----YRLIATGWLLGPLRTPAPIFKAMSGSLDLKTSSSI 170 H TE+A + I+TG P P P+ A + L+T +S+ Sbjct: 349 AHYTEAANEYFFDQISTGAFSDP---PVPLNMACHKTESLRTLASV 391
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%) Frame = -1 Query: 433 YGFSASSGLHVCCGAGGPYNYNMTAACGLPGV---------SACDNPATHINWDGIHLTE 281 +GF S L CCG GG YNYN CG+ + CD P + WDG+H T+ Sbjct: 294 HGFKGS--LVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQ 351 Query: 280 SAYRLI 263 +A + I Sbjct: 352 AANKFI 357
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -1 Query: 463 VIEFLNEPARYGFSASSGLHVCCGAGGPYNYNMTAACGLPGVSACDNPATHINWDGIHLT 284 + + L PA YGF + CC G + A C C N ++++ WDG+H T Sbjct: 459 ISQMLETPAAYGFEETK--KPCCKTG---LLSAGALCKKSTSKICPNTSSYLFWDGVHPT 513 Query: 283 ESAYRLI 263 + AY+ I Sbjct: 514 QRAYKTI 520
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 32.7 bits (73), Expect = 0.47 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = -1 Query: 316 THINWDGIHLTESAYRLIATGWLLGPLRTPAPIFKAMSGSLDLKTSSS 173 T I+WDG+HL+E Y IA W + I KA++G S S Sbjct: 112 TDISWDGLHLSEIGYTKIANIW----YKYTIDILKALAGQTQPTPSPS 155
>TGT_SYNEL (Q8CWM7) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 378 Score = 32.0 bits (71), Expect = 0.81 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -3 Query: 299 WHPPHGVCI*AHRHRLALGALTHTRAYFQGHVRISGSQDIFINLINQHLQP 147 +H PHG A + +G L + + H++ +G+Q I N + HLQP Sbjct: 20 FHTPHGTV--ATPRFMPVGTLANVKTLTPEHLKAAGAQMILANTYHLHLQP 68
>TRPA_MYCTU (P66980) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 270 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +2 Query: 266 EPICRLREVDAIPVDVRGGVIARAHARQPASRSHVVVIGPTCATAHVE 409 E + R++ V IPV V GV +RA A Q A + V++G TA E Sbjct: 201 ELVGRVKAVSDIPVGVGLGVRSRAQAAQIAQYADGVIVGSALVTALTE 248
>TRPA_MYCBO (P66981) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 270 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +2 Query: 266 EPICRLREVDAIPVDVRGGVIARAHARQPASRSHVVVIGPTCATAHVE 409 E + R++ V IPV V GV +RA A Q A + V++G TA E Sbjct: 201 ELVGRVKAVSDIPVGVGLGVRSRAQAAQIAQYADGVIVGSALVTALTE 248
>NLTP_HUMAN (P22307) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++I+G+ + + L N LQP L Sbjct: 507 LMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGNAKL 547
>NLTP_CHICK (Q07598) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) (Fragment) Length = 547 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++ISG+ + + L N LQP L Sbjct: 507 LMTGKMNPQTAFFQGKLKISGNMGMAMKLQNLQLQPGKAKL 547
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -1 Query: 394 GAGGPYNYNMTAACGLPGVSACD-NPATHINWDGIHLTESAYRLIATGWLL-GPLRTPAP 221 G+ GP NYN AC L + C NP H+ + TE T LL G L PAP Sbjct: 473 GSRGPANYNTCTACKLQVCNLCGFNPTPHL----VEKTEWLCLNCQTKRLLEGSLGEPAP 528 Query: 220 I 218 + Sbjct: 529 L 529
>NLTP_RABIT (O62742) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++I+G+ + + L N LQP L Sbjct: 507 LMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAKL 547
>NLTP_MOUSE (P32020) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++I+G+ + + L N LQP L Sbjct: 507 LMTGKMNPQSAFFQGKLKIAGNMGLAMKLQNLQLQPGKAKL 547
>NLTP_BOVIN (P07857) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 543 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++I+G+ + + L N LQP L Sbjct: 503 LMTGKMNPQTAFFQGKLKINGNMGLAMKLQNLQLQPGKAKL 543
>AUR1_YEAST (P36107) Aureobasidin A resistance protein| Length = 401 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 142 AATSTLHVCYLFYKQAPHFLAKVCLRLWLSLCDTH 38 A L CY F K P F+A VC W ++ TH Sbjct: 259 ATMEALFFCYCFPKLKPLFIAYVCWLWWSTMYLTH 293
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -1 Query: 394 GAGGPYNYNMTAACGLPGVSACD-NPATHINWDGIHLTESAYRLIATGWLL-GPLRTPAP 221 G+ GP NYN AC L + C NP H+ + TE T LL G L PAP Sbjct: 471 GSRGPANYNTCTACKLRVCTLCGFNPTPHL----VEKTEWLCLNCQTKRLLEGSLGEPAP 526 Query: 220 I 218 + Sbjct: 527 L 527
>COMD4_HUMAN (Q9H0A8) COMM domain-containing protein 4| Length = 199 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 165 YKIDEDVLRS-RDPDMALKIGAGVRKGPKSQPVAMSLYADSVRWMPSQL 308 Y + +L+S +P + L++ G +QPVAMSL AD + + ++L Sbjct: 140 YTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAEL 188
>COMD4_BOVIN (Q5E9V6) COMM domain-containing protein 4| Length = 199 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Frame = +3 Query: 126 RVEVAAVRLKMLI-------YKIDEDVLRS-RDPDMALKIGAGVRKGPKSQPVAMSLYAD 281 R+ ++R+ L+ Y + +LR+ +P + L++ G +QPVAMSL AD Sbjct: 120 RLRACSLRVNRLVXVGWRVDYTLSSSLLRTVEEPLVHLRLEVAASPGAPAQPVAMSLSAD 179 Query: 282 SVRWMPSQL 308 + + + L Sbjct: 180 KFQVLLADL 188
>TSN10_HUMAN (Q9H1Z9) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 355 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -1 Query: 466 PVIEFLNEPARYGFSASSGLHVCCGAGG--PYNYNMTAACGLPGVSACDNPAT 314 P + FL + + G CCGA + N+ C PGV AC PA+ Sbjct: 197 PDLRFLLDQVQLGLR-------CCGAASYQDWQQNLYFNCSSPGVQACSLPAS 242
>TRPA_MYCPA (Q740P2) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 271 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 266 EPICRLREVDAIPVDVRGGVIARAHARQPASRSHVVVIGPTCATA 400 E + R+RE+ IPV V GV +R A Q + V++G +A Sbjct: 200 ELVSRVREISDIPVGVGLGVRSREQAAQIGGYADGVIVGSALVSA 244
>PIWI_BRARE (Q8UVX0) Piwi-like protein 1| Length = 858 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -2 Query: 225 RLFSRPCQDLWISRHLHQSYKSTSSTERLQPLLCMYATCSINKLHTF 85 RL SRP +W H YK + RL+ L ++ K HTF Sbjct: 118 RLLSRP---MWALYQYHVDYKPPMESRRLRSALLFQHEETLGKAHTF 161
>TSN10_MOUSE (Q8VCF5) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 331 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -1 Query: 466 PVIEFLNEPARYGFSASSGLHVCCGAGG--PYNYNMTAACGLPGVSACDNPAT 314 P + FL + + G CCGA + N+ C PGV AC PA+ Sbjct: 195 PDLHFLLDQVQLGLQ-------CCGAVSYQDWQQNLYFNCSSPGVQACSLPAS 240
>NAS3_ORYSA (Q9FXW5) Nicotianamine synthase 3 (EC 2.5.1.43)| (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S- adenosyl-methionine 3-amino-3-carboxypropyltransferase 3) (OsNAS3) Length = 343 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = -2 Query: 282 SLHIGSSPPV-------GSWGPYAHPRLFSRPCQDLWISRHLHQSYKSTSSTERL 139 S+ I PPV G + H + SRPCQ + HQ + S+ E+L Sbjct: 286 SVIIARKPPVAAPALEGGDAHAHGHGAVVSRPCQRCEMEARAHQKMEDMSAMEKL 340
>NLTP_RAT (P11915) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 547 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -3 Query: 254 LALGALTHTRAYFQGHVRISGSQDIFINLINQHLQPNGCNL 132 L G + A+FQG ++I+G+ + + L + LQP+ L Sbjct: 507 LMTGKMNPQSAFFQGKLKIAGNMGLAMKLQSLQLQPDKAKL 547 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,920,945 Number of Sequences: 219361 Number of extensions: 1508479 Number of successful extensions: 4060 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4057 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)