ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa815... 58 3e-05
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa814... 52 0.002
5dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa815... 46 0.10
8ref|NM_188454.1| Oryza sativa (japonica cultivar-group), Ozsa814... 46 0.10
9dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
10dbj|AK107557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
11gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
13dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.40
15emb|CR405694.7| Zebrafish DNA sequence from clone DKEY-21A6 in l... 42 1.6
16gb|AF240531.1|AF240531 Lactococcus lactis subsp. cremoris FhuB-l... 42 1.6
17emb|BX072534.9| Zebrafish DNA sequence from clone DKEY-16C1, com... 42 1.6
18emb|BX842240.3| Zebrafish DNA sequence from clone DKEY-13I15 in ... 42 1.6
19gb|AY108995.1| Zea mays PCO109727 mRNA sequence 42 1.6
20gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 6.3
21ref|XM_380809.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 6.3
22gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, co... 40 6.3
23gb|AC010888.12| Homo sapiens BAC clone RP11-418N16 from 2, compl... 40 6.3
24dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 6.3
25emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in l... 40 6.3
26emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on ch... 40 6.3 
>ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa8151 predicted mRNA
          Length = 1137

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctccgtgaggtggatgccatcccagttgatgtgcgtggcggggttatcgcacgcgctcac 340
            |||||||||||||||||| |||||| |||||  || ||||||||    |||||||||| |
Sbjct: 1056 ctccgtgaggtggatgccgtcccagctgatggacgcggcggggtccgggcacgcgctcgc 997

                                                         
Query: 341  gccaggcaacccgcaagccgcagtcatgttgtagttatagggccc 385
            ||| || || ||||| ||||| |||  ||||||||| || |||||
Sbjct: 996  gccggggaagccgcacgccgccgtcgcgttgtagttgtacggccc 952
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                           
Query: 281     ctccgtgaggtggatgccatcccagttgatgtgcgtggcggggttatcgcacgcgctcac 340
               |||||||||||||||||| |||||| |||||  || ||||||||    |||||||||| |
Sbjct: 6365976 ctccgtgaggtggatgccgtcccagctgatggacgcggcggggtccgggcacgcgctcgc 6365917

                                                            
Query: 341     gccaggcaacccgcaagccgcagtcatgttgtagttatagggccc 385
               ||| || || ||||| ||||| |||  ||||||||| || |||||
Sbjct: 6365916 gccggggaagccgcacgccgccgtcgcgttgtagttgtacggccc 6365872



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 281     ctccgtgaggtggatgccatcccagttgat 310
               |||||||||||||||||| |||||||||||
Sbjct: 6342887 ctccgtgaggtggatgccgtcccagttgat 6342858



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 281     ctccgtgaggtggatgccatcccagttgatg 311
               |||||||||||||||||| |||||| |||||
Sbjct: 6380756 ctccgtgaggtggatgccgtcccagctgatg 6380726



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 281     ctccgtgaggtggatgccatcccagttgatg 311
               ||||||||||||||| || ||||||||||||
Sbjct: 6356911 ctccgtgaggtggatcccgtcccagttgatg 6356881
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                          
Query: 281    ctccgtgaggtggatgccatcccagttgatgtgcgtggcggggttatcgcacgcgctcac 340
              |||||||||||||||||| |||||| |||||  || ||||||||    |||||||||| |
Sbjct: 137042 ctccgtgaggtggatgccgtcccagctgatggacgcggcggggtccgggcacgcgctcgc 136983

                                                           
Query: 341    gccaggcaacccgcaagccgcagtcatgttgtagttatagggccc 385
              ||| || || ||||| ||||| |||  ||||||||| || |||||
Sbjct: 136982 gccggggaagccgcacgccgccgtcgcgttgtagttgtacggccc 136938



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 281    ctccgtgaggtggatgccatcccagttgat 310
              |||||||||||||||||| |||||||||||
Sbjct: 113953 ctccgtgaggtggatgccgtcccagttgat 113924



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 281    ctccgtgaggtggatgccatcccagttgatg 311
              |||||||||||||||||| |||||| |||||
Sbjct: 151822 ctccgtgaggtggatgccgtcccagctgatg 151792



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 281    ctccgtgaggtggatgccatcccagttgatg 311
              ||||||||||||||| || ||||||||||||
Sbjct: 127977 ctccgtgaggtggatcccgtcccagttgatg 127947
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>ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa8146 predicted mRNA
          Length = 1194

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 281  ctccgtgaggtggatgccatcccagttgat 310
            |||||||||||||||||| |||||||||||
Sbjct: 1062 ctccgtgaggtggatgccgtcccagttgat 1033
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>dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G04, full
            insert sequence
          Length = 1526

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 281  ctccgtgaggtggatgccatcccagttgat 310
            |||||||||||||||||| |||||||||||
Sbjct: 1132 ctccgtgaggtggatgccgtcccagttgat 1103
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>dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E09, full
            insert sequence
          Length = 1531

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 281  ctccgtgaggtggatgccatcccagttgat 310
            |||||||||||||||||| |||||||||||
Sbjct: 1132 ctccgtgaggtggatgccgtcccagttgat 1103
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>ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa8155 predicted mRNA
          Length = 1110

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 281  ctccgtgaggtggatgccatcccagttgatg 311
            |||||||||||||||||| |||||| |||||
Sbjct: 1029 ctccgtgaggtggatgccgtcccagctgatg 999
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>ref|NM_188454.1| Oryza sativa (japonica cultivar-group), Ozsa8149 predicted mRNA
          Length = 1137

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 281  ctccgtgaggtggatgccatcccagttgatg 311
            ||||||||||||||| || ||||||||||||
Sbjct: 1050 ctccgtgaggtggatcccgtcccagttgatg 1020
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0665D10
          Length = 134967

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 281  ctccgtgaggtggatgccatcccagttgatg 311
            |||||||||||||||||| |||||| |||||
Sbjct: 3151 ctccgtgaggtggatgccgtcccagctgatg 3121
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>dbj|AK107557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B05, full
            insert sequence
          Length = 1723

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 281  ctccgtgaggtggatgccatcccagttgatg 311
            ||||||||||||||| || ||||||||||||
Sbjct: 1279 ctccgtgaggtggatcccgtcccagttgatg 1249
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>gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0001I22,
              complete sequence
          Length = 162413

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 285    gtgaggtggatgccatcccagttgatgtgc 314
              ||||||||||||||||||||| | ||||||
Sbjct: 101231 gtgaggtggatgccatcccagctaatgtgc 101202
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 285      gtgaggtggatgccatcccagttgatgtgc 314
                ||||||||||||||||||||| | ||||||
Sbjct: 18137398 gtgaggtggatgccatcccagctaatgtgc 18137427
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>dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D07, full
            insert sequence
          Length = 1311

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 285  gtgaggtggatgccatcccagttgatgtgc 314
            ||||||||||||||||||||| | ||||||
Sbjct: 1132 gtgaggtggatgccatcccagctaatgtgc 1103
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 285      gtgaggtggatgccatcccagttgatgtgc 314
                ||||||||||||||||||||| | ||||||
Sbjct: 18265974 gtgaggtggatgccatcccagctaatgtgc 18265945
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>emb|CR405694.7| Zebrafish DNA sequence from clone DKEY-21A6 in linkage group 17, complete
              sequence
          Length = 207156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    ttgagatccagagatcctgac 206
              |||||||||||||||||||||
Sbjct: 156568 ttgagatccagagatcctgac 156548
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>gb|AF240531.1|AF240531 Lactococcus lactis subsp. cremoris FhuB-like protein gene, partial
            cds; and FhuG-like protein, FhuD-like protein, CmbR
            (cmbR), major facilitator superfamily-like protein, and
            aldo/keto reductase-like protein genes, complete cds
          Length = 5744

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 8    tgctttaatttatatttttgc 28
            |||||||||||||||||||||
Sbjct: 997  tgctttaatttatatttttgc 1017
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>emb|BX072534.9| Zebrafish DNA sequence from clone DKEY-16C1, complete sequence
          Length = 205800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      actgctttaatttatattttt 26
              |||||||||||||||||||||
Sbjct: 141643 actgctttaatttatattttt 141623
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>emb|BX842240.3| Zebrafish DNA sequence from clone DKEY-13I15 in linkage group 20,
             complete sequence
          Length = 168556

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     actgctttaatttatattttt 26
             |||||||||||||||||||||
Sbjct: 68172 actgctttaatttatattttt 68192
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>gb|AY108995.1| Zea mays PCO109727 mRNA sequence
          Length = 847

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 281 ctccgtgaggtggatgccatcccag 305
           |||||||||||||||||| ||||||
Sbjct: 321 ctccgtgaggtggatgccgtcccag 297
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      catactgctttaatttatat 22
              ||||||||||||||||||||
Sbjct: 773363 catactgctttaatttatat 773344
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>ref|XM_380809.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00633.1)
           partial mRNA
          Length = 11976

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 gagccaaccggtggcgatga 267
           ||||||||||||||||||||
Sbjct: 850 gagccaaccggtggcgatga 869
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>gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, complete sequence
          Length = 170435

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      catactgctttaatttatattttt 26
              |||| |||||||||||||||||||
Sbjct: 101531 catattgctttaatttatattttt 101508
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>gb|AC010888.12| Homo sapiens BAC clone RP11-418N16 from 2, complete sequence
          Length = 191863

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tactgctttaatttatattt 24
              ||||||||||||||||||||
Sbjct: 104416 tactgctttaatttatattt 104397
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       catactgctttaatttatat 22
               ||||||||||||||||||||
Sbjct: 1406145 catactgctttaatttatat 1406126
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>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete
              sequence
          Length = 217582

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tgtcacacaatgataaccat 62
              ||||||||||||||||||||
Sbjct: 190633 tgtcacacaatgataaccat 190652
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>emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on chromosome 11, complete
             sequence
          Length = 203593

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   gatttataagattgatgaagatgt 184
             |||||||||||| |||||||||||
Sbjct: 44756 gatttataagatggatgaagatgt 44733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,076,358
Number of Sequences: 3902068
Number of extensions: 4076358
Number of successful extensions: 79410
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79225
Number of HSP's gapped (non-prelim): 185
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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