ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30b08 |
|---|---|
| Clone Library Name | barley_pub |
>YIG4_YEAST (P40516) Hypothetical 28.7 kDa protein in RNR3-ARC15 intergenic| region Length = 257 Score = 31.6 bits (70), Expect = 1.2 Identities = 26/79 (32%), Positives = 39/79 (49%) Frame = -1 Query: 474 MYWQSVASLVSPGGILVITSCSRTKDELVQEVENFNQRKLGATLSEGALTSDAVVFKYLD 295 +Y V ++ GI +ITSC+ T+DELV+ +E N K+ T+ KY Sbjct: 191 VYAGVVERILKKDGIFLITSCNFTQDELVKIIETDN-LKMWKTI------------KY-- 235 Query: 294 HVQAYPNVDGVCIATVAFL 238 V + V G I +VAF+ Sbjct: 236 PVFQFGGVQGATICSVAFV 254
>RSMB_SALTY (Q8ZLM5) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 429 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 447 VSPGGILVITSCSRTKDELVQEVENFNQRKLGATLSE 337 + PGG LV +CS +E +++ F QR A LSE Sbjct: 364 LKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSE 400
>UBP11_YEAST (P36026) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) Length = 717 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = +3 Query: 9 KFLYICLQHLLDKLSNSTVMRYYPAITKHHTSE*RIRQGKLSSMEEQ 149 +FL I L + ++LSN V++YYP + + + ++ K E+ Sbjct: 392 EFLLIVLARIHEELSNENVVKYYPDLVSYDANALQVNPSKYEKWYER 438
>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of| PAS protein 4) (MOP4) Length = 824 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = -3 Query: 169 NNVPQDSCSSMDDNL--PCRIRYSLVWCFV 86 NNVP SC+ D+ L PCR+ CF+ Sbjct: 198 NNVPSPSCNGFDNTLSRPCRVPLGKEVCFI 227
>RSMB_SALTI (Q8Z1X1) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 429 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 447 VSPGGILVITSCSRTKDELVQEVENFNQRKLGATLSE 337 + PGG LV +CS +E +++ F QR A LSE Sbjct: 364 LKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSE 400
>SYA_LISIN (Q92BK9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 879 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -1 Query: 438 GGILVITSCSRTKD--ELVQEVENFNQRKLGATLSEGALTSDAV 313 GG+ VI KD +L Q V+N+ +K+G L GA+ D V Sbjct: 771 GGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVLGAVQGDKV 814
>SYA_LISMO (Q8Y722) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 879 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -1 Query: 438 GGILVITSCSRTKD--ELVQEVENFNQRKLGATLSEGALTSDAV 313 GG+ VI KD +L Q V+N+ +K+G L GA+ D V Sbjct: 771 GGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKV 814
>SYA_LISMF (Q71ZG6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 879 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -1 Query: 438 GGILVITSCSRTKD--ELVQEVENFNQRKLGATLSEGALTSDAV 313 GG+ VI KD +L Q V+N+ +K+G L GA+ D V Sbjct: 771 GGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKV 814
>YHRE_SCHPO (Q9P7Z3) Hypothetical protein C839.14c in chromosome II| Length = 238 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 474 MYWQSVASLVSPGGILVITSCSRTKDEL 391 +Y V ++SP GI +ITSC+ T EL Sbjct: 167 VYVDRVRGMLSPNGIFLITSCNWTIQEL 194
>SFRP3_BOVIN (Q95117) Secreted frizzled-related protein 3 precursor (sFRP-3)| (Frizzled-related protein 1) (FrzB-1) Length = 325 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 298 RPCASLPKRRWCLHRHRCFPAYMKYMYMYPSSLSC 194 +PC S+ +R R C P +KY + +P SL+C Sbjct: 106 KPCKSVCERA----RQGCEPILIKYRHSWPESLAC 136
>RSMB_YERPE (Q8ZJ81) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 429 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 438 GGILVITSCSRTKDELVQEVENFNQRKLGATLSEGALTS 322 GG+LV +CS +E Q++ F QR A L+E T+ Sbjct: 367 GGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTA 405
>SFRP3_MOUSE (P97401) Secreted frizzled-related protein 3 precursor (sFRP-3)| (Frizzled-related protein 1) (FrzB-1) (Frezzled) (Fritz) Length = 323 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 298 RPCASLPKRRWCLHRHRCFPAYMKYMYMYPSSLSC 194 +PC S+ +R R C P +KY + +P SL+C Sbjct: 106 KPCKSVCERA----RQGCEPILIKYRHSWPESLAC 136
>RSMB_VIBPA (Q87KD3) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 427 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 447 VSPGGILVITSCSRTKDELVQEVENFNQRKLGATL 343 + PGG +V +CS T E V++V+ F R A L Sbjct: 361 LKPGGTMVYATCSITPQENVEQVKAFLARTADAQL 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,511,738 Number of Sequences: 219361 Number of extensions: 1557297 Number of successful extensions: 3638 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3637 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
