ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30b08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1309 Score = 143 bits (72), Expect = 6e-31 Identities = 207/252 (82%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 1056 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 997 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 996 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 937 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 936 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 877 Query: 421 gatcaccagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||| ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 876 gatgaccagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 817 Query: 481 ctttacaggtcc 492 |||||||||||| Sbjct: 816 ctttacaggtcc 805
>ref|XM_549956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1053 Score = 143 bits (72), Expect = 6e-31 Identities = 207/252 (82%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 850 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 791 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 790 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 731 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 730 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 671 Query: 421 gatcaccagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||| ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 670 gatgaccagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 611 Query: 481 ctttacaggtcc 492 |||||||||||| Sbjct: 610 ctttacaggtcc 599
>dbj|AK100063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I04, full insert sequence Length = 1054 Score = 143 bits (72), Expect = 6e-31 Identities = 207/252 (82%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 851 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 792 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 791 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 732 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 731 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 672 Query: 421 gatcaccagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||| ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 671 gatgaccagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 612 Query: 481 ctttacaggtcc 492 |||||||||||| Sbjct: 611 ctttacaggtcc 600
>dbj|AK071475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F21, full insert sequence Length = 1310 Score = 143 bits (72), Expect = 6e-31 Identities = 207/252 (82%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 1057 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 998 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 997 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 938 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 937 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 878 Query: 421 gatcaccagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||| ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 877 gatgaccagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 818 Query: 481 ctttacaggtcc 492 |||||||||||| Sbjct: 817 ctttacaggtcc 806
>gb|AY110229.1| Zea mays CL24135_2 mRNA sequence Length = 807 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 368 ttgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgtgat 423 ||||||||||| ||||||||||| | |||||||||||| |||||||| |||||||| Sbjct: 81 ttgaagttctctacctcctgcaccaactcatccttggttctgctgcatgatgtgat 136 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 425 accagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 |||| ||| |||||| | |||||||||||| | || |||||||||||||||||||| Sbjct: 362 accaatataccaccacgggaaaccaagctatcaacggactgccaatacatcattct 417
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 425 accagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 1184977 accagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 1184922 Score = 61.9 bits (31), Expect = 2e-06 Identities = 145/183 (79%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 1185446 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 1185387 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 1185386 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 1185327 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 1185326 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 1185267 Query: 421 gat 423 ||| Sbjct: 1185266 gat 1185264
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 425 accagtatgccaccaggagaaaccaagctagccactgactgccaatacatcattct 480 ||||||||||||||||||||||||| | || || |||||||||||||||||||| Sbjct: 39280 accagtatgccaccaggagaaaccagccctgcaaccgactgccaatacatcattct 39225 Score = 61.9 bits (31), Expect = 2e-06 Identities = 145/183 (79%) Strand = Plus / Minus Query: 241 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 300 |||||||||||| | |||||| || ||| ||| | ||||| | ||| |||||||||| Sbjct: 39749 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 39690 Query: 301 gtacttgaacaccacagcatcgctggtcagcgctccttcagatagcgtggcgcccaactt 360 ||||||||||||| ||| ||| |||| | |||| ||||| || | | || | | ||| Sbjct: 39689 gtacttgaacaccgcagtatcactggcctgcgcaccttcggagcccatagcactgagctt 39630 Query: 361 tctctgattgaagttctccacctcctgcactagctcatccttggtcctgctgcaggatgt 420 |||||| |||||| |||| |||||||| || | |||||||||||| ||||| || ||||| Sbjct: 39629 tctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatgatgt 39570 Query: 421 gat 423 ||| Sbjct: 39569 gat 39567
>ref|NM_105339.2| Arabidopsis thaliana AR401; S-adenosylmethionine-dependent methyltransferase AT1G66680 (AR401) mRNA, complete cds Length = 1421 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 416 gatgtgatcaccagtatgccaccaggagaaacca 449 ||||||||||||| ||| |||||||||| ||||| Sbjct: 923 gatgtgatcaccaatattccaccaggagcaacca 890
>gb|AC122310.2| Mus musculus BAC clone RP23-296E17 from 12, complete sequence Length = 186217 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 141 gaagaacagctgtcctggggta 162 |||||||||||||||||||||| Sbjct: 59186 gaagaacagctgtcctggggta 59207
>emb|BX815165.1|CNS0ACS6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS39ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1269 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 416 gatgtgatcaccagtatgccaccaggagaaacca 449 ||||||||||||| ||| |||||||||| ||||| Sbjct: 907 gatgtgatcaccaatattccaccaggagcaacca 874
>gb|BT005868.1| Arabidopsis thaliana At1g66680 gene, complete cds Length = 792 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 416 gatgtgatcaccagtatgccaccaggagaaacca 449 ||||||||||||| ||| |||||||||| ||||| Sbjct: 551 gatgtgatcaccaatattccaccaggagcaacca 518
>gb|AY087928.1| Arabidopsis thaliana clone 3969 mRNA, complete sequence Length = 1304 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 416 gatgtgatcaccagtatgccaccaggagaaacca 449 ||||||||||||| ||| |||||||||| ||||| Sbjct: 921 gatgtgatcaccaatattccaccaggagcaacca 888
>dbj|D88747.2| Arabidopsis thaliana mRNA for AR401, complete cds Length = 1245 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 416 gatgtgatcaccagtatgccaccaggagaaacca 449 ||||||||||||| ||| |||||||||| ||||| Sbjct: 875 gatgtgatcaccaatattccaccaggagcaacca 842
>gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 168861 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 atacatatacatatatttcatgtat 236 ||||||||||||||||| ||||||| Sbjct: 148819 atacatatacatatattacatgtat 148843
>gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, complete sequence Length = 215745 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 tacatatacatatatttcatgtatg 237 ||||||||||||||||| ||||||| Sbjct: 193301 tacatatacatatatttaatgtatg 193325
>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence Length = 171002 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttcat 232 ||||||||||||||||||||| Sbjct: 51020 atacatatacatatatttcat 51040
>emb|AL138694.18| Human DNA sequence from clone RP11-330C15 on chromosome 13q33.1-34 Contains a pseudogene similar to part of host cell factor 2 (HCF-2) and a CpG island, complete sequence Length = 157264 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 atacatatacatatatttcatgtat 236 |||||||||||||||| |||||||| Sbjct: 87569 atacatatacatatatatcatgtat 87545
>gb|AC093831.3| Homo sapiens BAC clone RP11-401I19 from 4, complete sequence Length = 182116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 atatacatatatttcatgtat 236 ||||||||||||||||||||| Sbjct: 43463 atatacatatatttcatgtat 43443
>gb|AF241308.1|AF241307S2 Ovis aries T cell receptor constant region Cgamma4, exons Length = 1988 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 atacatatacatatatttcatgtat 236 |||||||||||||||| |||||||| Sbjct: 1698 atacatatacatatatatcatgtat 1722
>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete sequence Length = 189362 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 tacatatacatatatttcatgtatg 237 ||||||||||||||||| ||||||| Sbjct: 85574 tacatatacatatattttatgtatg 85550
>emb|BX571883.3| Zebrafish DNA sequence from clone DKEY-151P17 in linkage group 18, complete sequence Length = 253172 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 ctttcaaacagtacagtaatg 68 ||||||||||||||||||||| Sbjct: 223933 ctttcaaacagtacagtaatg 223913
>gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547F10, complete sequence Length = 191549 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 aagagagggaggatggataca 216 ||||||||||||||||||||| Sbjct: 153156 aagagagggaggatggataca 153136
>gb|AC103387.11| Mus musculus chromosome 3, clone RP24-383D8, complete sequence Length = 157053 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttcat 232 ||||||||||||||||||||| Sbjct: 117123 atacatatacatatatttcat 117143
>emb|BX649641.19| Zebrafish DNA sequence from clone CH211-223O1 in linkage group 18, complete sequence Length = 141018 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 ctttcaaacagtacagtaatg 68 ||||||||||||||||||||| Sbjct: 73216 ctttcaaacagtacagtaatg 73196
>emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2506P8 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 199420 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 aagagagggaggatggataca 216 ||||||||||||||||||||| Sbjct: 46882 aagagagggaggatggataca 46902
>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence Length = 172583 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttcat 232 ||||||||||||||||||||| Sbjct: 26148 atacatatacatatatttcat 26168
>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence Length = 180886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 tacatatacatatatttcatgtatg 237 ||||||||||||||||| ||||||| Sbjct: 11069 tacatatacatatatttaatgtatg 11093
>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217496 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gctgtcctggggtacattgt 168 |||||||||||||||||||| Sbjct: 59522 gctgtcctggggtacattgt 59503
>gb|AC101748.7| Mus musculus chromosome 5, clone RP24-133H21, complete sequence Length = 168366 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 ttctgtacatctgtttgcagcatttgct 40 |||||| ||||||||| ||||||||||| Sbjct: 29316 ttctgtgcatctgtttccagcatttgct 29343
>gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosome 13, complete sequence Length = 209914 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atacaaatttctgtacatct 24 |||||||||||||||||||| Sbjct: 35577 atacaaatttctgtacatct 35558
>gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosome 19, complete sequence Length = 192550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 30336 gaacaagagagggaggatgg 30355
>gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Hospital Oakland Research Institute) complete sequence Length = 150308 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ttggtcctgctgcaggatgt 420 |||||||||||||||||||| Sbjct: 101459 ttggtcctgctgcaggatgt 101478
>gb|AC121525.7| Mus musculus chromosome 5, clone RP23-359D12, complete sequence Length = 188700 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 ttctgtacatctgtttgcagcatttgct 40 |||||| ||||||||| ||||||||||| Sbjct: 137709 ttctgtgcatctgtttccagcatttgct 137736
>gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosome 19, complete sequence Length = 162238 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 52924 gaacaagagagggaggatgg 52905
>gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome 1, complete sequence Length = 165927 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tatacatatatttcatgtat 236 |||||||||||||||||||| Sbjct: 137267 tatacatatatttcatgtat 137248
>gb|AC083805.17| Homo sapiens 12 BAC RP11-620J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104816 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 gaggatggatacatatacatatat 227 ||||||||||| |||||||||||| Sbjct: 7246 gaggatggatatatatacatatat 7223
>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence Length = 70416 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 atacatatacatatatttcatgta 235 ||||||||||||||||| |||||| Sbjct: 27647 atacatatacatatattacatgta 27670
>gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, complete sequence Length = 197271 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tatacatatatttcatgtat 236 |||||||||||||||||||| Sbjct: 104194 tatacatatatttcatgtat 104175
>emb|AL592223.5| Human DNA sequence from clone RP11-359P12 on chromosome 1, complete sequence Length = 76681 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 atggatacatatacatatat 227 |||||||||||||||||||| Sbjct: 69816 atggatacatatacatatat 69797
>emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chromosome X Contains the 5' end of a novel gene and a CpG island, complete sequence Length = 166016 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gatggatacatatacatata 226 |||||||||||||||||||| Sbjct: 91346 gatggatacatatacatata 91327
>emb|AL590732.7| Human DNA sequence from clone RP11-14I4 on chromosome 6 Contains the 5' end of a novel gene and a nucleophosmin (NPM1) pseudogene, complete sequence Length = 71092 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttca 231 |||||||||||||||||||| Sbjct: 63159 atacatatacatatatttca 63178
>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2 Contains the gene for TED protein (TED), the 5' end of the ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel genes and three CpG islands, complete sequence Length = 186538 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ctccacctcctgcactagct 395 |||||||||||||||||||| Sbjct: 51226 ctccacctcctgcactagct 51207
>gb|AC022296.34| Homo sapiens 3 BAC RP11-91K8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153650 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttca 231 |||||||||||||||||||| Sbjct: 107622 atacatatacatatatttca 107641
>gb|AC116645.4| Homo sapiens BAC clone RP11-685C12 from 4, complete sequence Length = 155761 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 atggatacatatacatatat 227 |||||||||||||||||||| Sbjct: 55668 atggatacatatacatatat 55687
>gb|AC090660.3| Homo sapiens chromosome 18, clone RP11-869O1, complete sequence Length = 195156 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 atatacatatatttcatgta 235 |||||||||||||||||||| Sbjct: 149550 atatacatatatttcatgta 149531
>emb|AL683823.11| Mouse DNA sequence from clone RP23-128G10 on chromosome 3, complete sequence Length = 180483 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 177127 gaacaagagagggaggatgg 177108
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence Length = 169479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaatttctgtacatctgttt 28 |||||||||||||||||||| Sbjct: 53779 aaatttctgtacatctgttt 53760
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 11046761 gagggaggttggatacatatatatatat 11046734
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ggaacaagagagggaggatggata 214 |||||||||||||||||| ||||| Sbjct: 12354770 ggaacaagagagggaggaaggata 12354793
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 3439403 gagggaggttggatacatatatatatat 3439430 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 3434022 gagggaggttggatacatatatatatat 3434049
>gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosome 10, complete sequence Length = 201867 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 70784 gaacaagagagggaggatgg 70803
>gb|AC104069.3| Homo sapiens BAC clone RP11-279B11 from 2, complete sequence Length = 155106 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 atacatatacatatatttca 231 |||||||||||||||||||| Sbjct: 21597 atacatatacatatatttca 21578
>gb|AC012353.6| Homo sapiens BAC clone RP11-82P18 from 2, complete sequence Length = 203755 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 agccataacaaagcaccata 99 |||||||||||||||||||| Sbjct: 55004 agccataacaaagcaccata 54985
>gb|AC026765.22| Homo sapiens 12 BAC RP4-601P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129225 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 caccagtatgccaccaggagaaac 447 |||||||||||||| ||||||||| Sbjct: 27629 caccagtatgccacaaggagaaac 27652
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ggaacaagagagggaggatggata 214 |||||||||||||||||| ||||| Sbjct: 138324 ggaacaagagagggaggaaggata 138347
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1661_C12 Length = 122214 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 52226 gagggaggttggatacatatatatatat 52253 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 46845 gagggaggttggatacatatatatatat 46872
>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0599F09 Length = 157415 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ggaacaagagagggaggatggata 214 |||||||||||||||||| ||||| Sbjct: 20354 ggaacaagagagggaggaaggata 20377
>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete sequence Length = 148751 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 atacatatacatatatttca 231 |||||||||||||||||||| Sbjct: 84443 atacatatacatatatttca 84462
>dbj|AK101491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042L23, full insert sequence Length = 1607 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ggaacaagagagggaggatggata 214 |||||||||||||||||| ||||| Sbjct: 394 ggaacaagagagggaggaaggata 417
>dbj|AK064341.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H04, full insert sequence Length = 1632 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ggaacaagagagggaggatggata 214 |||||||||||||||||| ||||| Sbjct: 419 ggaacaagagagggaggaaggata 442
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 11046459 gagggaggttggatacatatatatatat 11046432
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 139415 gagggaggttggatacatatatatatat 139442
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134082 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gagggaggatggatacatatacatatat 227 |||||||| |||||||||||| |||||| Sbjct: 58814 gagggaggttggatacatatatatatat 58841
>gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complete sequence Length = 218313 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 185439 gaacaagagagggaggatgg 185458
>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence Length = 222061 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaacaagagagggaggatgg 211 |||||||||||||||||||| Sbjct: 202501 gaacaagagagggaggatgg 202520
>gb|AC102896.9| Mus musculus chromosome 5, clone RP24-353A8, complete sequence Length = 156422 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctccacctcctgcactagc 394 |||||||||||||||||||| Sbjct: 59502 tctccacctcctgcactagc 59521
>emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chromosome 2, complete sequence Length = 136064 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 atggatacatatacatatat 227 |||||||||||||||||||| Sbjct: 6382 atggatacatatacatatat 6363
>emb|AL929497.7| Mouse DNA sequence from clone RP23-341F15 on chromosome 4, complete sequence Length = 38346 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 tacatatacatatatttcatgtat 236 ||||||| |||||||||||||||| Sbjct: 29750 tacatattcatatatttcatgtat 29727
>gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse6 BAC Library) complete sequence Length = 196838 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gctgtcctggggtacattgt 168 |||||||||||||||||||| Sbjct: 113214 gctgtcctggggtacattgt 113195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,160,470 Number of Sequences: 3902068 Number of extensions: 5160470 Number of successful extensions: 162233 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161737 Number of HSP's gapped (non-prelim): 490 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
