ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30b02 |
|---|---|
| Clone Library Name | barley_pub |
>IF32_ARATH (Q38884) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor-interacting protein 1) (TRIP-1) Length = 328 Score = 77.8 bits (190), Expect(2) = 1e-23 Identities = 35/39 (89%), Positives = 38/39 (97%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 RAGKFEAKF+ KIL+EEIGGVKGHFGPINALAFNPDG+S Sbjct: 266 RAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKS 304 Score = 49.7 bits (117), Expect(2) = 1e-23 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYFNIKM 194 SFSSGGEDGYVRL HFD +YFNIK+ Sbjct: 304 SFSSGGEDGYVRLHHFDSDYFNIKI 328
>IF32_MOUSE (Q9QZD9) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor-interacting protein 1) (TRIP-1) Length = 325 Score = 65.5 bits (158), Expect(2) = 6e-18 Identities = 28/39 (71%), Positives = 33/39 (84%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 R GKFEA+FFH EEE G VKGHFGPIN++AF+PDG+S Sbjct: 261 RIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKS 299 Score = 42.7 bits (99), Expect(2) = 6e-18 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYFNIK 197 S+SSGGEDGYVR+ +FDP+YF + Sbjct: 299 SYSSGGEDGYVRIHYFDPQYFEFE 322
>IF32_HUMAN (Q13347) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor-interacting protein 1) (TRIP-1) Length = 325 Score = 65.5 bits (158), Expect(2) = 6e-18 Identities = 28/39 (71%), Positives = 33/39 (84%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 R GKFEA+FFH EEE G VKGHFGPIN++AF+PDG+S Sbjct: 261 RIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKS 299 Score = 42.7 bits (99), Expect(2) = 6e-18 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYFNIK 197 S+SSGGEDGYVR+ +FDP+YF + Sbjct: 299 SYSSGGEDGYVRIHYFDPQYFEFE 322
>IF32_BOVIN (Q5E966) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3 p36) Length = 325 Score = 65.5 bits (158), Expect(2) = 6e-18 Identities = 28/39 (71%), Positives = 33/39 (84%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 R GKFEA+FFH EEE G VKGHFGPIN++AF+PDG+S Sbjct: 261 RIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKS 299 Score = 42.7 bits (99), Expect(2) = 6e-18 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYFNIK 197 S+SSGGEDGYVR+ +FDP+YF + Sbjct: 299 SYSSGGEDGYVRIHYFDPQYFEFE 322
>IF32_YEAST (P40217) Eukaryotic translation initiation factor 3 39 kDa subunit| (eIF3 p39) (Translation initiation factor eIF3, p39 subunit) Length = 347 Score = 60.5 bits (145), Expect(2) = 2e-15 Identities = 25/37 (67%), Positives = 31/37 (83%) Frame = -2 Query: 383 GKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 GKFEA+F+HKI EEEIG V+GHFGP+N +A +P G S Sbjct: 271 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 307 Score = 39.3 bits (90), Expect(2) = 2e-15 Identities = 14/24 (58%), Positives = 20/24 (83%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYFNIK 197 S++SGGEDG++RL HF+ YF+ K Sbjct: 307 SYASGGEDGFIRLHHFEKSYFDFK 330
>IF32_SCHPO (P79083) Eukaryotic translation initiation factor 3 39 kDa subunit| (eIF3 p39) (Translation initiation factor eIF3, p39 subunit) (Suppressor of uncontrolled mitosis 1) Length = 328 Score = 61.2 bits (147), Expect(2) = 7e-15 Identities = 26/37 (70%), Positives = 31/37 (83%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDG 279 R GKFEA+F+H ILEEE+G VKGHFGPIN +A +P G Sbjct: 264 RQGKFEARFYHAILEEELGRVKGHFGPINTIAVHPKG 300 Score = 36.6 bits (83), Expect(2) = 7e-15 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = -3 Query: 265 FSSGGEDGYVRLRHFDPEYFNIK 197 ++SGGEDGYVR+ FD YF+ K Sbjct: 303 YASGGEDGYVRVHFFDKNYFDFK 325
>IF32_DROME (O02195) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3i) (TRIP-1 homolog) Length = 326 Score = 63.2 bits (152), Expect(2) = 1e-14 Identities = 26/39 (66%), Positives = 34/39 (87%) Frame = -2 Query: 389 RAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRS 273 +AGKF+++FFH I EEE +KGHFGPIN+LAF+PDG+S Sbjct: 263 KAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGKS 301 Score = 33.9 bits (76), Expect(2) = 1e-14 Identities = 13/21 (61%), Positives = 18/21 (85%) Frame = -3 Query: 268 SFSSGGEDGYVRLRHFDPEYF 206 S++SGGEDG+VR++ FD YF Sbjct: 301 SYASGGEDGFVRVQTFDSTYF 321
>STRAP_MOUSE (Q9Z1Z2) Serine-threonine kinase receptor-associated protein| (UNR-interacting protein) Length = 351 Score = 34.7 bits (78), Expect = 0.057 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 344 EEIGGVKGHFGPINALAFNPDG 279 EE+ KGHFGPI+ + F+PDG Sbjct: 256 EELESYKGHFGPIHCVRFSPDG 277
>STRAP_HUMAN (Q9Y3F4) Serine-threonine kinase receptor-associated protein| (UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activator with WD repeats) Length = 350 Score = 34.7 bits (78), Expect = 0.057 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 344 EEIGGVKGHFGPINALAFNPDG 279 EE+ KGHFGPI+ + F+PDG Sbjct: 256 EELESYKGHFGPIHCVRFSPDG 277
>WDR7_HUMAN (Q9Y4E6) WD-repeat protein 7 (TGF-beta resistance-associated protein| TRAG) (Rabconnectin-3 beta) Length = 1490 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -2 Query: 329 VKGHFGPINALAFNPDGR 276 + GH GPI A+AF PDGR Sbjct: 1390 IHGHKGPITAVAFAPDGR 1407
>PSBD_EUGGR (P31557) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 187 CEFLKAAVETTPSSLGENIAFSFGSICERT*LSWMVYCVIAP-ICLQSAMGML 32 C L AAV T P+S+G ++ GS + W+ + P I L A G++ Sbjct: 71 CNALTAAVSTPPNSMGHSLLLLLGSEAQWDFTRWLQIGGLWPFIALHGAFGLI 123
>WDR7_MOUSE (Q920I9) WD-repeat protein 7 (TGF-beta resistance-associated protein| TRAG) Length = 1489 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 329 VKGHFGPINALAFNPDGR 276 + GH GPI A++F PDGR Sbjct: 1389 IHGHKGPITAVSFAPDGR 1406
>WDR7_RAT (Q9ERH3) WD-repeat protein 7 (TGF-beta resistance-associated protein| TRAG) Length = 1488 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 329 VKGHFGPINALAFNPDGR 276 + GH GPI A++F PDGR Sbjct: 1388 IHGHKGPITAVSFAPDGR 1405
>PSBD_CYAPA (P48079) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -3 Query: 187 CEFLKAAVETTPSSLGENIAFSFGSICERT*LSWMVYCVIAPI----CLQSAMGML 32 C FL AAV T +S+G +I F +G + W C I + L A+G++ Sbjct: 71 CNFLTAAVSTPANSMGHSILFVWGPEAQGDFTRW---CQIGGLWTFTALHGALGLI 123
>MSI1_ARATH (O22467) WD-40 repeat protein MSI1 (Protein MULTICOPY SUPPRESSOR OF| IRA 1) (Protein medicis) Length = 424 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/70 (22%), Positives = 37/70 (52%) Frame = +3 Query: 84 IQLSQVLSQIEPKEKAMFSPRDEGVVSTAALRNSQAYIFMLKYSGSKWRNLTYPSSPPLE 263 +Q+ Q ++ +A + P++ +++T + N++ Y+F YS +PS PPL+ Sbjct: 116 VQIIQQINHDGEVNRARYMPQNPFIIATKTV-NAEVYVF--DYS-------KHPSKPPLD 165 Query: 264 KLRTPPIRIK 293 P ++++ Sbjct: 166 GACNPDLKLR 175
>PSBD_PORPU (P51357) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 351 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 187 CEFLKAAVETTPSSLGENIAFSFGSICERT*LSW-MVYCVIAPICLQSAMGML 32 C FL AAV T +S+G ++ F +G + W + + A I L + G++ Sbjct: 70 CNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHGSFGLI 122
>WDR36_HUMAN (Q8NI36) WD repeat-containing protein 36 (T-cell activation WD| repeat-containing protein) (TA-WDRP) Length = 951 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -2 Query: 323 GHFGPINALAFNPDGR 276 GH G IN +AF+PDGR Sbjct: 620 GHQGQINDMAFSPDGR 635
>Y865_METJA (Q58275) Hypothetical UPF0004 protein MJ0865| Length = 449 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = +3 Query: 117 PKEKAMFSPRDEGVVSTAALRNSQAYIFMLKYSGSKWRNLTYPSSPPLEKLRTPPIRIK 293 PKE+ + EG L ++A F L W+++ P +P L L RI+ Sbjct: 370 PKEENLLYKMHEGEYRKLGLSEAEARCFDLLIHAEMWKSMPKPLTPQLYNLYLNEARIQ 428
>UL34_EBV (P03185) Protein BFRF1| Length = 336 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +3 Query: 132 MFSPRDEGVVSTAALRNSQAYI--FMLKYSGSKWRNLTYPSSP 254 +FS + T LR+ Q Y F+ K+ K +N YPSSP Sbjct: 36 VFSRGSSQPLCTVKLRHGQIYHLEFVYKFLAFKLKNCNYPSSP 78
>MSI1_LYCES (O22466) WD-40 repeat protein MSI1| Length = 424 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/70 (21%), Positives = 35/70 (50%) Frame = +3 Query: 84 IQLSQVLSQIEPKEKAMFSPRDEGVVSTAALRNSQAYIFMLKYSGSKWRNLTYPSSPPLE 263 +Q+ Q ++ +A + P++ +++T + A +++ YS +PS PPL+ Sbjct: 116 VQIIQQINHDGEVNRARYMPQNPFIIATKTV---SAEVYVFDYS-------KHPSKPPLD 165 Query: 264 KLRTPPIRIK 293 P +R++ Sbjct: 166 GACNPDLRLR 175
>UVRAG_DROME (Q9VK07) UVRAG-like protein| Length = 696 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +3 Query: 120 KEKAMFSPRDEGVVSTAALRNSQAYIFM--LKYSGSKWRNLTYPSSPPLEKLRT 275 +E+ + P+DEG+ S A R+S + M ++Y+ K + S LEKL T Sbjct: 200 EEEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEKLLT 253
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 801 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -2 Query: 323 GHFGPINALAFNPDGR 276 GH GPI++L F+P+GR Sbjct: 668 GHKGPIHSLTFSPNGR 683
>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 800 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -2 Query: 323 GHFGPINALAFNPDGR 276 GH GPI++L F+P+GR Sbjct: 667 GHKGPIHSLTFSPNGR 682
>YQ42_CAEEL (Q09235) Hypothetical protein C13B9.2| Length = 397 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +3 Query: 117 PKEKAMFSPRDEGVVSTAALRNSQAYIFMLKYSGSKWRNLTYPSSP--PLEKLRT 275 P EK++F+ R V+S +S++ IF+ SG LT PS+P EKL T Sbjct: 47 PDEKSVFATRK--VISEIRDFDSESTIFLFLISGGGSALLTSPSAPLDLAEKLET 99
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 350 LEEEIGGVKGHFGPINALAFNPDGRS 273 L E + G GH + ++AF+PDGR+ Sbjct: 460 LAERLEGPDGHKDSVYSVAFSPDGRN 485
>PSBD_CHLVU (P56319) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 187 CEFLKAAVETTPSSLGENIAFSFG 116 C FL AAV T +S+G ++ F +G Sbjct: 71 CNFLTAAVSTPANSMGHSLLFLWG 94
>TMC2_MOUSE (Q8R4P4) Transmembrane cochlear-expressed protein 2| Length = 888 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 87 QLSQVLSQIEPKEKAMFSPRDEGVVSTAALRN-SQAYIFMLKYSGS 221 +L+Q+L Q+E K+K + + R++ LR +A F+ KY G+ Sbjct: 134 ELAQILEQVEEKKKLITTVRNKPWPMAKKLRELREAQAFVEKYEGA 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,117,415 Number of Sequences: 219361 Number of extensions: 991186 Number of successful extensions: 2709 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2709 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
