ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481483.1| Oryza sativa (japonica cultivar-group), mRNA 137 3e-29
2dbj|AK122060.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
3gb|AY111787.1| Zea mays CL11185_1 mRNA sequence 109 7e-21
4dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
5gb|BT018726.1| Zea mays clone EL01N0518F09.d mRNA sequence 96 1e-16
6dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
7gb|AF335551.1|AF335551 Phaseolus vulgaris TGF-beta receptor-inte... 78 2e-11
8gb|AY360388.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
9gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
11emb|BX822030.1|CNS0A9BD Arabidopsis thaliana Full-length cDNA Co... 76 1e-10
12dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
13dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
14gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
16ref|NM_201968.1| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR ... 68 2e-08
17ref|NM_130191.3| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR ... 68 2e-08
18ref|NM_180119.1| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR ... 68 2e-08
19emb|BX820114.1|CNS0AAC4 Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
20emb|BX820112.1|CNS0AAC3 Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
21emb|BX819310.1|CNS0AADQ Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
22emb|BX820839.1|CNS0A9OL Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
23emb|BX820707.1|CNS0A9OS Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
24emb|BX820633.1|CNS0A9MA Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
25emb|BX820483.1|CNS0A9I1 Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
26emb|BX820257.1|CNS0A9MY Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
27emb|BX820796.1|CNS0A830 Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
28emb|BX819639.1|CNS0A80H Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
29emb|BX842024.1|CNS09YA9 Arabidopsis thaliana Full-length cDNA Co... 68 2e-08
30gb|AF285835.1|AF285835 Arabidopsis thaliana eukaryotic initiatio... 68 2e-08
31gb|U36765.1|ATU36765 Arabidopsis thaliana TGF-beta receptor inte... 68 2e-08
32gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map... 66 9e-08
33gb|AY064633.1| Arabidopsis thaliana eukaryotic translation initi... 66 9e-08
34gb|AF370485.1|AF370485 Arabidopsis thaliana eukaryotic translati... 66 9e-08
35gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HB... 54 3e-04
36ref|NM_130192.2| Arabidopsis thaliana nucleotide binding AT2G462... 52 0.001
37gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
39dbj|AK118944.1| Arabidopsis thaliana At2g46290 mRNA for putative... 52 0.001
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
41gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete seq... 46 0.085
42gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete s... 46 0.085
43gb|AY378168.1| Cichorium intybus TGF-beta-receptor-interacting p... 44 0.34
44emb|AL671884.3| Human DNA sequence from clone RP13-44L19 on chro... 44 0.34
45emb|CR450728.8| Zebrafish DNA sequence from clone DKEY-204K18 in... 42 1.3
46gb|AY338808.1| Arborimus longicaudus isolate RTVB_I_1 cytochrome... 42 1.3
47gb|AY338791.1| Arborimus longicaudus isolate H_RTVT13 cytochrome... 42 1.3
48gb|AY338789.1| Arborimus longicaudus isolate H_RTVT12 cytochrome... 42 1.3
49gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 42 1.3
50gb|BT016930.1| Zea mays clone E04912703E02.c mRNA sequence 40 5.3
51gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosom... 40 5.3
52gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome... 40 5.3
53gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, co... 40 5.3
54emb|BX511109.4| Zebrafish DNA sequence from clone DKEY-288G16 in... 40 5.3
55dbj|AB194638.1| Leek yellow stripe virus gene for coat protein, ... 40 5.3
56gb|AC090354.8| Homo sapiens chromosome 18, clone RP11-735P10, co... 40 5.3
57gb|AC096717.3| Homo sapiens BAC clone RP11-10O3 from 4, complete... 40 5.3
58gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32... 40 5.3
59gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome... 40 5.3
60dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.3 
>ref|XM_481483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score =  137 bits (69), Expect = 3e-29
 Identities = 163/195 (83%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                       
Query: 195 atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
           ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 977 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 918

                                                                       
Query: 255 ccactcgaaaagctaaggactcctcccatcaggattaaatgctaatgcattgattggtcc 314
           ||||||||||||||       || |||||||||||||||||| |  || || ||||||||
Sbjct: 917 ccactcgaaaagct-------ccgcccatcaggattaaatgccagcgcgttaattggtcc 865

                                                                       
Query: 315 aaaatgtcctttaacaccaccaatctcttcttctaaaatcttgtggaaaaatttcgcctc 374
           |||||| ||||||||||||||||| || ||||  ||||||||||| ||||||||||| ||
Sbjct: 864 aaaatggcctttaacaccaccaatttcctcttgcaaaatcttgtgaaaaaatttcgcttc 805

                          
Query: 375 gaatttacctgcacg 389
            ||||| ||||||||
Sbjct: 804 aaattttcctgcacg 790
to top
>dbj|AK122060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115B09, full
            insert sequence
          Length = 1437

 Score =  137 bits (69), Expect = 3e-29
 Identities = 163/195 (83%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 195  atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
            ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 1126 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 1067

                                                                        
Query: 255  ccactcgaaaagctaaggactcctcccatcaggattaaatgctaatgcattgattggtcc 314
            ||||||||||||||       || |||||||||||||||||| |  || || ||||||||
Sbjct: 1066 ccactcgaaaagct-------ccgcccatcaggattaaatgccagcgcgttaattggtcc 1014

                                                                        
Query: 315  aaaatgtcctttaacaccaccaatctcttcttctaaaatcttgtggaaaaatttcgcctc 374
            |||||| ||||||||||||||||| || ||||  ||||||||||| ||||||||||| ||
Sbjct: 1013 aaaatggcctttaacaccaccaatttcctcttgcaaaatcttgtgaaaaaatttcgcttc 954

                           
Query: 375  gaatttacctgcacg 389
             ||||| ||||||||
Sbjct: 953  aaattttcctgcacg 939
to top
>gb|AY111787.1| Zea mays CL11185_1 mRNA sequence
          Length = 623

 Score =  109 bits (55), Expect = 7e-21
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 274 ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
           |||| |||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 421 ctccgcccatcaggattaaatgccaaagcattaattggcccaaaatgccctttaacacca 480

                                                                      
Query: 334 ccaatctcttcttctaaaatcttgtggaaaaatttcgcctcgaatttacctgcacggcg 392
           ||||| || ||||  ||||||||| || | ||||| ||||| |||||||| ||||||||
Sbjct: 481 ccaatttcctcttgcaaaatcttgcggtagaatttagcctcaaatttaccagcacggcg 539
to top
>dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H11, full
            insert sequence
          Length = 1395

 Score =  103 bits (52), Expect = 4e-19
 Identities = 152/186 (81%), Gaps = 7/186 (3%)
 Strand = Plus / Minus

                                                                        
Query: 195  atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
            ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 1100 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 1041

                                                                        
Query: 255  ccactcgaaaagctaaggactcctcccatcaggattaaatgctaatgcattgattggtcc 314
            |||||||| |||||       ||  ||||||||||||||||| | ||| || ||||||||
Sbjct: 1040 ccactcgagaagct-------ccgtccatcaggattaaatgccagtgcgttaattggtcc 988

                                                                        
Query: 315  aaaatgtcctttaacaccaccaatctcttcttctaaaatcttgtggaaaaatttcgcctc 374
            |||||| ||||| ||||||||||| || ||||  ||||||||||| || |||||||| ||
Sbjct: 987  aaaatggccttttacaccaccaatttcctcttgcaaaatcttgtgaaagaatttcgcttc 928

                  
Query: 375  gaattt 380
             |||||
Sbjct: 927  aaattt 922
to top
>gb|BT018726.1| Zea mays clone EL01N0518F09.d mRNA sequence
          Length = 1706

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 93/108 (86%)
 Strand = Plus / Minus

                                                                       
Query: 274 ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
           |||| |||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 117 ctccgcccatcaggattaaatgccaaagcattaattggcccaaaatgccctttaacacca 58

                                                           
Query: 334 ccaatctcttcttctaaaatcttgtggaaaaatttcgcctcgaattta 381
           ||||| || | ||  |||||||||||| | ||||| ||||| ||||||
Sbjct: 57  ccaatttcctgttgcaaaatcttgtggtagaatttagcctcaaattta 10



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 237  acatatccatcctcaccgccactcgaaaagctaa 270
            ||||||||||| ||||| ||||| ||||||||||
Sbjct: 1178 acatatccatcttcaccaccacttgaaaagctaa 1145
to top
>dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P07, full
            insert sequence
          Length = 1396

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 151/186 (81%), Gaps = 7/186 (3%)
 Strand = Plus / Minus

                                                                        
Query: 195  atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
            ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 1101 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 1042

                                                                        
Query: 255  ccactcgaaaagctaaggactcctcccatcaggattaaatgctaatgcattgattggtcc 314
            |||||||| |||       | ||  ||||||||||||||||| | ||| || ||||||||
Sbjct: 1041 ccactcgagaag-------ccccgtccatcaggattaaatgccagtgcgttaattggtcc 989

                                                                        
Query: 315  aaaatgtcctttaacaccaccaatctcttcttctaaaatcttgtggaaaaatttcgcctc 374
            |||||| ||||| ||||||||||| || ||||  ||||||||||| || |||||||| ||
Sbjct: 988  aaaatggccttttacaccaccaatttcctcttgcaaaatcttgtgaaagaatttcgcttc 929

                  
Query: 375  gaattt 380
             |||||
Sbjct: 928  aaattt 923
to top
>gb|AF335551.1|AF335551 Phaseolus vulgaris TGF-beta receptor-interacting protein 1 mRNA,
           complete cds
          Length = 1143

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaatc 339
           |||||||| ||||| || |||||||| |||||||||||||||||||| ||||| ||||| 
Sbjct: 914 ccatcagggttaaaggccaatgcattaattggtccaaaatgtcctttcacacccccaatt 855

                  
Query: 340 tcttctt 346
           |||||||
Sbjct: 854 tcttctt 848
to top
>gb|AY360388.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0038J12,
              complete sequence
          Length = 131944

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 274    ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
              |||| |||||||||||||||||| |  || || |||||||||||||| ||||||||||||
Sbjct: 117714 ctccgcccatcaggattaaatgccagcgcgttaattggtccaaaatggcctttaacacca 117655

                                    
Query: 334    ccaatctcttcttctaaaatct 355
              ||||| || ||||  |||||||
Sbjct: 117654 ccaatttcctcttgcaaaatct 117633



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                          
Query: 195    atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
              ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 118965 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 118906

                            
Query: 255    ccactcgaaaagct 268
              ||||||||||||||
Sbjct: 118905 ccactcgaaaagct 118892



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 354    cttgtggaaaaatttcgcctcgaatttacctgcacg 389
              |||||| ||||||||||| || ||||| ||||||||
Sbjct: 117517 cttgtgaaaaaatttcgcttcaaattttcctgcacg 117482
to top
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05,
             complete sequence
          Length = 82985

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 274   ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
             |||| |||||||||||||||||| |  || || |||||||||||||| ||||||||||||
Sbjct: 12233 ctccgcccatcaggattaaatgccagcgcgttaattggtccaaaatggcctttaacacca 12174

                                   
Query: 334   ccaatctcttcttctaaaatct 355
             ||||| || ||||  |||||||
Sbjct: 12173 ccaatttcctcttgcaaaatct 12152



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 195   atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
             ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 13484 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 13425

                           
Query: 255   ccactcgaaaagct 268
             ||||||||||||||
Sbjct: 13424 ccactcgaaaagct 13411



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 354   cttgtggaaaaatttcgcctcgaatttacctgcacg 389
             |||||| ||||||||||| || ||||| ||||||||
Sbjct: 12036 cttgtgaaaaaatttcgcttcaaattttcctgcacg 12001
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                            
Query: 274      ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
                |||| |||||||||||||||||| |  || || |||||||||||||| ||||||||||||
Sbjct: 12901457 ctccgcccatcaggattaaatgccagcgcgttaattggtccaaaatggcctttaacacca 12901516

                                      
Query: 334      ccaatctcttcttctaaaatct 355
                ||||| || ||||  |||||||
Sbjct: 12901517 ccaatttcctcttgcaaaatct 12901538



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 195      atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
                ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 12900206 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 12900265

                              
Query: 255      ccactcgaaaagct 268
                ||||||||||||||
Sbjct: 12900266 ccactcgaaaagct 12900279



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 354      cttgtggaaaaatttcgcctcgaatttacctgcacg 389
                |||||| ||||||||||| || ||||| ||||||||
Sbjct: 12901654 cttgtgaaaaaatttcgcttcaaattttcctgcacg 12901689
to top
>emb|BX822030.1|CNS0A9BD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL93ZC12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1117

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||||||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 943 actcttcccatcaggattaaatgccaaagcatttataggtccaaaatgacctttcacacc 884

                 
Query: 333 accaat 338
           ||||||
Sbjct: 883 accaat 878
to top
>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1052H09
          Length = 190806

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                         
Query: 274   ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
             |||| |||||||||||||||||| |  || || |||||||||||||| ||||||||||||
Sbjct: 38437 ctccgcccatcaggattaaatgccagcgcgttaattggtccaaaatggcctttaacacca 38496

                                   
Query: 334   ccaatctcttcttctaaaatct 355
             ||||| || ||||  |||||||
Sbjct: 38497 ccaatttcctcttgcaaaatct 38518



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                         
Query: 195   atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
             ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 37186 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 37245

                           
Query: 255   ccactcgaaaagct 268
             ||||||||||||||
Sbjct: 37246 ccactcgaaaagct 37259



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 354   cttgtggaaaaatttcgcctcgaatttacctgcacg 389
             |||||| ||||||||||| || ||||| ||||||||
Sbjct: 38634 cttgtgaaaaaatttcgcttcaaattttcctgcacg 38669
to top
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0061E21
          Length = 155085

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                          
Query: 274    ctcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
              |||| |||||||||||||||||| |  || || |||||||||||||| ||||||||||||
Sbjct: 101975 ctccgcccatcaggattaaatgccagcgcgttaattggtccaaaatggcctttaacacca 102034

                                    
Query: 334    ccaatctcttcttctaaaatct 355
              ||||| || ||||  |||||||
Sbjct: 102035 ccaatttcctcttgcaaaatct 102056



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 195    atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
              ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 100724 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 100783

                            
Query: 255    ccactcgaaaagct 268
              ||||||||||||||
Sbjct: 100784 ccactcgaaaagct 100797



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 354    cttgtggaaaaatttcgcctcgaatttacctgcacg 389
              |||||| ||||||||||| || ||||| ||||||||
Sbjct: 102172 cttgtgaaaaaatttcgcttcaaattttcctgcacg 102207
to top
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
              complete sequence
          Length = 146677

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                          
Query: 280    ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaatc 339
              ||||||||||||||||| | ||| || |||||||||||||| ||||| ||||||||||| 
Sbjct: 123428 ccatcaggattaaatgccagtgcgttaattggtccaaaatggccttttacaccaccaatt 123369

                              
Query: 340    tcttcttctaaaatct 355
              || ||||  |||||||
Sbjct: 123368 tcctcttgcaaaatct 123353



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                          
Query: 195    atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
              ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 124859 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 124800

                            
Query: 255    ccactcgaaaagct 268
              |||||||| |||||
Sbjct: 124799 ccactcgagaagct 124786
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                           
Query: 280     ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaatc 339
               ||||||||||||||||| | ||| || |||||||||||||| ||||| ||||||||||| 
Sbjct: 9351483 ccatcaggattaaatgccagtgcgttaattggtccaaaatggccttttacaccaccaatt 9351424

                               
Query: 340     tcttcttctaaaatct 355
               || ||||  |||||||
Sbjct: 9351423 tcctcttgcaaaatct 9351408



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                           
Query: 195     atctttatgttgaaatactcaggatcaaaatggcgtaacctgacatatccatcctcaccg 254
               ||||| |||||||| || |||| |||||||||| | | ||| ||||||||||| ||||| 
Sbjct: 9352914 atcttgatgttgaagtagtcagaatcaaaatggtgcagccttacatatccatcttcacca 9352855

                             
Query: 255     ccactcgaaaagct 268
               |||||||| |||||
Sbjct: 9352854 ccactcgagaagct 9352841
to top
>ref|NM_201968.1| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN
            1); nucleotide binding AT2G46280 (TRIP-1) transcript
            variant AT2G46280.3 mRNA, complete cds
          Length = 1391

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 1117 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 1058

                  
Query: 333  accaat 338
            ||||||
Sbjct: 1057 accaat 1052
to top
>ref|NM_130191.3| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN
            1); nucleotide binding AT2G46280 (TRIP-1) transcript
            variant AT2G46280.1 mRNA, complete cds
          Length = 1311

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 1024 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 965

                  
Query: 333  accaat 338
            ||||||
Sbjct: 964  accaat 959
to top
>ref|NM_180119.1| Arabidopsis thaliana TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN
           1); nucleotide binding AT2G46280 (TRIP-1) transcript
           variant AT2G46280.2 mRNA, complete cds
          Length = 1255

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 968 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 909

                 
Query: 333 accaat 338
           ||||||
Sbjct: 908 accaat 903
to top
>emb|BX820114.1|CNS0AAC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS75ZC02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1142

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 942 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 883

                 
Query: 333 accaat 338
           ||||||
Sbjct: 882 accaat 877
to top
>emb|BX820112.1|CNS0AAC3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS74ZH09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1239

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 943 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 884

                 
Query: 333 accaat 338
           ||||||
Sbjct: 883 accaat 878
to top
>emb|BX819310.1|CNS0AADQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB67ZC11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1098

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 900 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 841

                 
Query: 333 accaat 338
           ||||||
Sbjct: 840 accaat 835
to top
>emb|BX820839.1|CNS0A9OL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH74ZE08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1227

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 943 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 884

                 
Query: 333 accaat 338
           ||||||
Sbjct: 883 accaat 878
to top
>emb|BX820707.1|CNS0A9OS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH61ZB03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1142

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 942 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 883

                 
Query: 333 accaat 338
           ||||||
Sbjct: 882 accaat 877
to top
>emb|BX820633.1|CNS0A9MA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH54ZE08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 676

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 453 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 394

                 
Query: 333 accaat 338
           ||||||
Sbjct: 393 accaat 388
to top
>emb|BX820483.1|CNS0A9I1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH39ZC08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1117

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 942 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 883

                 
Query: 333 accaat 338
           ||||||
Sbjct: 882 accaat 877
to top
>emb|BX820257.1|CNS0A9MY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH13ZE03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1203

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 1021 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 962

                  
Query: 333  accaat 338
            ||||||
Sbjct: 961  accaat 956
to top
>emb|BX820796.1|CNS0A830 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH6ZE03 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1370

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 1095 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 1036

                  
Query: 333  accaat 338
            ||||||
Sbjct: 1035 accaat 1030
to top
>emb|BX819639.1|CNS0A80H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS10ZA11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1228

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 1022 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 963

                  
Query: 333  accaat 338
            ||||||
Sbjct: 962  accaat 957
to top
>emb|BX842024.1|CNS09YA9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS63ZG03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1086

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 943 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 884

                 
Query: 333 accaat 338
           ||||||
Sbjct: 883 accaat 878
to top
>gb|AF285835.1|AF285835 Arabidopsis thaliana eukaryotic initiation factor 3I1 subunit
           (TIF3I1) mRNA, complete cds
          Length = 1200

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 966 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 907

                 
Query: 333 accaat 338
           ||||||
Sbjct: 906 accaat 901
to top
>gb|U36765.1|ATU36765 Arabidopsis thaliana TGF-beta receptor interacting protein 1
           homolog mRNA, complete cds
          Length = 1138

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 273 actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
           |||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| |||||
Sbjct: 917 actcttcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacacc 858

                 
Query: 333 accaat 338
           ||||||
Sbjct: 857 accaat 852
to top
>gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete
             sequence
          Length = 110149

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 278   tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaa 337
             ||||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||
Sbjct: 19724 tcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacaccaccaa 19665

              
Query: 338   t 338
             |
Sbjct: 19664 t 19664



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 278   tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaa 337
             ||||||||||| | ||||| || ||||| || ||||||||||| ||||| || |||||||
Sbjct: 17476 tcccatcaggactgaatgccaaagcattaataggtccaaaatgacctttcacgccaccaa 17417

              
Query: 338   t 338
             |
Sbjct: 17416 t 17416
to top
>gb|AY064633.1| Arabidopsis thaliana eukaryotic translation initiation factor 3
           delta subunit (At2g46280; T3F17.7) mRNA, complete cds
          Length = 1011

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 278 tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaa 337
           ||||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||
Sbjct: 907 tcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacaccaccaa 848

            
Query: 338 t 338
           |
Sbjct: 847 t 847
to top
>gb|AF370485.1|AF370485 Arabidopsis thaliana eukaryotic translation initiation factor 3
           delta subunit (At2g46280; T3F17.7) mRNA, complete cds
          Length = 1205

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 278 tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaa 337
           ||||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||
Sbjct: 963 tcccatcaggattgaatgccaaagcatttataggtccaaaatgacctttcacaccaccaa 904

            
Query: 338 t 338
           |
Sbjct: 903 t 903
to top
>gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HBa0064J13, complete
              sequence
          Length = 118649

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 278    tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
              ||||||||||||| || || || ||||| |||||||||||||| ||||| |||||
Sbjct: 110751 tcccatcaggattgaaagccaaagcatttattggtccaaaatgccctttgacacc 110697
to top
>ref|NM_130192.2| Arabidopsis thaliana nucleotide binding AT2G46290 mRNA, complete cds
          Length = 1283

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||| | ||||| || ||||| || ||||||||||| ||||| || ||
Sbjct: 1074 actcttcccatcaggactgaatgccaaagcattaataggtccaaaatgacctttcacgcc 1015

                  
Query: 333  accaat 338
            ||||||
Sbjct: 1014 accaat 1009
to top
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 280    ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
              ||||||||||||||||| |   | || |||||||||||||| ||||||||||||
Sbjct: 104024 ccatcaggattaaatgccagcacgttaattggtccaaaatggcctttaacacca 103971
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 280      ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
                ||||||||||||||||| |   | || |||||||||||||| ||||||||||||
Sbjct: 22546879 ccatcaggattaaatgccagcacgttaattggtccaaaatggcctttaacacca 22546826
to top
>dbj|AK118944.1| Arabidopsis thaliana At2g46290 mRNA for putative eukaryotic
            translation initiation factor 3 delta subunit, complete
            cds, clone: RAFL21-28-F22
          Length = 1283

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  actcctcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacc 332
            |||| ||||||||||| | ||||| || ||||| || ||||||||||| ||||| || ||
Sbjct: 1074 actcttcccatcaggactgaatgccaaagcattaataggtccaaaatgacctttcacgcc 1015

                  
Query: 333  accaat 338
            ||||||
Sbjct: 1014 accaat 1009
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 280      ccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacacca 333
                ||||||||||||||||| |   | || |||||||||||||| ||||||||||||
Sbjct: 22856790 ccatcaggattaaatgccagcacgttaattggtccaaaatggcctttaacacca 22856737
to top
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence
          Length = 130054

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 300   tgcattgattggtccaaaatgtcctttaacaccaccaatctcttctt 346
             |||||| || ||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 62005 tgcattaatcggtccaaaatgccctttcacacccccaatttcttctt 61959
to top
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence
          Length = 140624

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 300   tgcattgattggtccaaaatgtcctttaacaccaccaatctcttctt 346
             |||||| || ||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 83497 tgcattaatcggtccaaaatgccctttcacacccccaatttcttctt 83543
to top
>gb|AY378168.1| Cichorium intybus TGF-beta-receptor-interacting protein-like mRNA,
           partial sequence
          Length = 588

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 67/81 (82%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                       
Query: 278 tcccatcaggattaaatgctaatgcattgattggtccaaaatgtcctttaacaccaccaa 337
           |||||||||| || || || || ||||| ||||| |||||||| |||||| |  | ||||
Sbjct: 500 tcccatcagggttgaaagccaaagcatttattggaccaaaatgccctttagc--ctccaa 443

                                
Query: 338 tctcttcttctaaaatcttgt 358
           ||||||||| ||||| |||||
Sbjct: 442 tctcttcttgtaaaaccttgt 422
to top
>emb|AL671884.3| Human DNA sequence from clone RP13-44L19 on chromosome 6 Contains the
             gene for mandaselin (FLJ12838) and a CpG island, complete
             sequence
          Length = 105273

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 289   ttaaatgctaatgcattgattg 310
             ||||||||||||||||||||||
Sbjct: 61721 ttaaatgctaatgcattgattg 61700
to top
>emb|CR450728.8| Zebrafish DNA sequence from clone DKEY-204K18 in linkage group 8,
              complete sequence
          Length = 193025

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 235    tgacatatccatcctcaccgc 255
              |||||||||||||||||||||
Sbjct: 175786 tgacatatccatcctcaccgc 175806
to top
>gb|AY338808.1| Arborimus longicaudus isolate RTVB_I_1 cytochrome b gene, partial
           cds; mitochondrial
          Length = 664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 279 cccatcaggattaaatgctaatgca 303
           |||||||||||||||| ||||||||
Sbjct: 312 cccatcaggattaaattctaatgca 336
to top
>gb|AY338791.1| Arborimus longicaudus isolate H_RTVT13 cytochrome b gene, partial
           cds; mitochondrial
          Length = 664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 279 cccatcaggattaaatgctaatgca 303
           |||||||||||||||| ||||||||
Sbjct: 312 cccatcaggattaaattctaatgca 336
to top
>gb|AY338789.1| Arborimus longicaudus isolate H_RTVT12 cytochrome b gene, partial
           cds; mitochondrial
          Length = 664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 279 cccatcaggattaaatgctaatgca 303
           |||||||||||||||| ||||||||
Sbjct: 312 cccatcaggattaaattctaatgca 336
to top
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 314    caaaatgtcctttaacaccac 334
              |||||||||||||||||||||
Sbjct: 135296 caaaatgtcctttaacaccac 135316
to top
>gb|BT016930.1| Zea mays clone E04912703E02.c mRNA sequence
          Length = 357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 actcctcccatcaggattaaatgc 296
           ||||| ||||||||||||||||||
Sbjct: 330 actccgcccatcaggattaaatgc 353
to top
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aggtgctattacacagtaga 81
             ||||||||||||||||||||
Sbjct: 90464 aggtgctattacacagtaga 90483
to top
>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence
          Length = 234359

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ttacatctttatgttgaaat 210
             ||||||||||||||||||||
Sbjct: 65199 ttacatctttatgttgaaat 65218
to top
>gb|AC090396.9| Homo sapiens chromosome 18, clone RP11-868G15, complete sequence
          Length = 215375

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     aagtcaagttctctcacaaa 111
              ||||||||||||||||||||
Sbjct: 185295 aagtcaagttctctcacaaa 185276
to top
>emb|BX511109.4| Zebrafish DNA sequence from clone DKEY-288G16 in linkage group 7,
             complete sequence
          Length = 124061

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ccatcaggattaaatgctaa 299
             ||||||||||||||||||||
Sbjct: 31126 ccatcaggattaaatgctaa 31145
to top
>dbj|AB194638.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Saga.Kikai#1
          Length = 864

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 cagcagccttgagaaattca 185
           ||||||||||||||||||||
Sbjct: 728 cagcagccttgagaaattca 747
to top
>gb|AC090354.8| Homo sapiens chromosome 18, clone RP11-735P10, complete sequence
          Length = 211162

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aagtcaagttctctcacaaa 111
             ||||||||||||||||||||
Sbjct: 86221 aagtcaagttctctcacaaa 86202
to top
>gb|AC096717.3| Homo sapiens BAC clone RP11-10O3 from 4, complete sequence
          Length = 109027

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ctaaaatcttgtggaaaaat 366
             ||||||||||||||||||||
Sbjct: 18219 ctaaaatcttgtggaaaaat 18200
to top
>gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32E8 genomic sequence, complete
             sequence
          Length = 82454

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   aaattgagccaaaagaaaaagcta 132
             |||||||| |||||||||||||||
Sbjct: 31678 aaattgagacaaaagaaaaagcta 31701
to top
>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence
          Length = 207128

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    ttacatctttatgttgaaat 210
              ||||||||||||||||||||
Sbjct: 170477 ttacatctttatgttgaaat 170496
to top
>dbj|AP002008.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-794P6, complete
             sequences
          Length = 194973

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   catcaggattaaatgctaatgcat 304
             ||||||||| ||||||||||||||
Sbjct: 98206 catcaggataaaatgctaatgcat 98183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,147,581
Number of Sequences: 3902068
Number of extensions: 4147581
Number of successful extensions: 72279
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72069
Number of HSP's gapped (non-prelim): 208
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top