ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30a09 |
|---|---|
| Clone Library Name | barley_pub |
>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (Class II apurinic/apyrimidinic(AP)-endonuclease) Length = 361 Score = 57.0 bits (136), Expect = 4e-08 Identities = 35/91 (38%), Positives = 48/91 (52%) Frame = -2 Query: 531 GFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSE 352 GFT+ ER F N L +G VD+YR+ + K+ F WS G+ + R+DYFVVS+ Sbjct: 273 GFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSK 330 Query: 351 GLKDRIVSCEMHGHGIELEGFYGSDHCPVSL 259 L D I H + GSDHCP+ + Sbjct: 331 RLMDSIKISPFHRTSV-----MGSDHCPIGV 356
>EXOA_BACSU (P37454) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 252 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Frame = -2 Query: 552 KEDCGQPGFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIG-KYRGKRMR 376 K + GF+ ER+ F L G VD++R+++ D+E +SW G + R R Sbjct: 159 KANRNNAGFSDQEREAFTRFLEAG-FVDSFRHVYP--DLEGAYSWWSYRAGARDRNIGWR 215 Query: 375 IDYFVVSEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSL 259 IDYFVVSE LK++I + GSDHCPV L Sbjct: 216 IDYFVVSESLKEQIEDASISA------DVMGSDHCPVEL 248
>APEX1_HUMAN (P27695) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) (REF-1 protein) Length = 317 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/94 (30%), Positives = 47/94 (50%) Frame = -2 Query: 531 GFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSE 352 GFT ERQ FG +L L D++R+L+ F W+ + + R+DYF++S Sbjct: 230 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSH 288 Query: 351 GLKDRIVSCEMHGHGIELEGFYGSDHCPVSLELS 250 L + ++ + GSDHCP++L L+ Sbjct: 289 SLLPALCDSKIRSKAL------GSDHCPITLYLA 316
>ARP_ARATH (P45951) Apurinic endonuclease-redox protein (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) Length = 536 Score = 50.1 bits (118), Expect = 4e-06 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Frame = -2 Query: 531 GFTLAERQRFG-NILSQGKLVDAYRYLHKEKDMECGFS-WSGNPIGKYRGKRMRIDYFVV 358 GFT+ ERQ FG N+L +G VD +R K+ G++ W G+ K R+DYF+V Sbjct: 450 GFTIEERQSFGANLLDKG-FVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLV 505 Query: 357 SEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSLEL 253 S+ ++ +H I L GSDHCP+ L L Sbjct: 506 SQS-----IAANVHDSYI-LPDINGSDHCPIGLIL 534
>APEX1_MOUSE (P28352) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 316 Score = 50.1 bits (118), Expect = 4e-06 Identities = 29/94 (30%), Positives = 47/94 (50%) Frame = -2 Query: 531 GFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSE 352 GFT ERQ FG +L L D++R+L+ F W+ + + R+DYF++S Sbjct: 229 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSH 287 Query: 351 GLKDRIVSCEMHGHGIELEGFYGSDHCPVSLELS 250 L + ++ + GSDHCP++L L+ Sbjct: 288 SLLPALCDSKIRSKAL------GSDHCPITLYLA 315
>APEX1_RAT (P43138) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 316 Score = 49.7 bits (117), Expect = 6e-06 Identities = 29/94 (30%), Positives = 47/94 (50%) Frame = -2 Query: 531 GFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSE 352 GFT ERQ FG +L L D++R+L+ F W+ + + R+DYF++S Sbjct: 229 GFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSH 287 Query: 351 GLKDRIVSCEMHGHGIELEGFYGSDHCPVSLELS 250 L + ++ + GSDHCP++L L+ Sbjct: 288 SLLPALCDSKIRSKAL------GSDHCPITLYLA 315
>APEX1_BOVIN (P23196) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease 1) (APEX nuclease) (APEN) Length = 317 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/94 (29%), Positives = 48/94 (51%) Frame = -2 Query: 531 GFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSE 352 GFT ERQ FG +L L D++R+L+ F W+ + + R+DYF++S+ Sbjct: 230 GFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQ 288 Query: 351 GLKDRIVSCEMHGHGIELEGFYGSDHCPVSLELS 250 + + ++ + GSDHCP++L L+ Sbjct: 289 SVLPALCDSKIRSKAL------GSDHCPITLYLA 316
>RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) Length = 679 Score = 46.2 bits (108), Expect = 6e-05 Identities = 29/98 (29%), Positives = 48/98 (48%) Frame = -2 Query: 552 KEDCGQPGFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRI 373 K + GFT ER + +L G VD +R+L+ ++ F W+ + R R+ Sbjct: 586 KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVGWRL 643 Query: 372 DYFVVSEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSL 259 DY +VSE ++V E+ + GSDHCP+++ Sbjct: 644 DYCLVSERFVPKVVEHEIRSQCL------GSDHCPITI 675
>EXOA_STRR6 (P0A2X4) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 275 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = -2 Query: 534 PGFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSW--SGNPIGKYRGKRMRIDYFV 361 PGFT ER F N+L+ G D +R++H D+ ++W + K RIDY++ Sbjct: 187 PGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWL 243 Query: 360 VSEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSLEL 253 S + D++ +M G DH P+ LE+ Sbjct: 244 TSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>EXOA_STRPN (P0A2X3) Exodeoxyribonuclease (EC 3.1.11.2)| Length = 275 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Frame = -2 Query: 534 PGFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSW--SGNPIGKYRGKRMRIDYFV 361 PGFT ER F N+L+ G D +R++H D+ ++W + K RIDY++ Sbjct: 187 PGFTDEERAGFTNLLATG-FTDTFRHVH--GDVPERYTWWAQRSKTSKINNTGWRIDYWL 243 Query: 360 VSEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSLEL 253 S + D++ +M G DH P+ LE+ Sbjct: 244 TSNRIADKVTKSDMIDSGAR------QDHTPIVLEI 273
>APEX2_MOUSE (Q68G58) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) (APEX nuclease 2) Length = 516 Score = 36.6 bits (83), Expect = 0.050 Identities = 26/86 (30%), Positives = 35/86 (40%) Frame = -2 Query: 483 GKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHGI 304 G +D+YRYLH K WS ++ R+DY L DR + + Sbjct: 240 GLFMDSYRYLHP-KQQRAFTCWSVVSGARHLNYGSRLDYV-----LGDRALVIDTFQASF 293 Query: 303 ELEGFYGSDHCPVSLELSKEAAEAPE 226 L GSDHCPV L+ A + Sbjct: 294 LLPEVMGSDHCPVGAVLNVSCVPAKQ 319
>DNL4_MOUSE (Q8BTF7) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 911 Score = 34.3 bits (77), Expect = 0.25 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = -2 Query: 441 DMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHGIELEGFYGS 280 D+EC +SW +P+ +R + +D + V L RI + + +EL F+G+ Sbjct: 798 DLECRYSWDHSPLSMFRHYTIYLDLYAVINDLSSRIEATRLGITALELR-FHGA 850
>APEX2_HUMAN (Q9UBZ4) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) (APEX nuclease 2) (APEX nuclease-like 2) (AP endonuclease XTH2) Length = 518 Score = 32.0 bits (71), Expect = 1.2 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Frame = -2 Query: 483 GKLVDAYRYLHKEKDMECGFS-WSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHG 307 G +D+YR ++ E F+ WS ++ R+DY L DR + + Sbjct: 241 GPFIDSYRCFQPKQ--EGAFTCWSAVTGARHLNYGSRLDYV-----LGDRTLVIDTFQAS 293 Query: 306 IELEGFYGSDHCPVSLELSKEAAEAPE 226 L GSDHCPV LS + A + Sbjct: 294 FLLPEVMGSDHCPVGAVLSVSSVPAKQ 320
>APEX2_BOVIN (Q5E9N9) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) Length = 514 Score = 31.2 bits (69), Expect = 2.1 Identities = 24/86 (27%), Positives = 34/86 (39%) Frame = -2 Query: 483 GKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHGI 304 G +D+YR + K WS ++ R+DY L DR + + Sbjct: 241 GPFIDSYRCF-QPKQKGAFTCWSTVSGARHLNYGSRLDYV-----LGDRTLVIDTFQSSF 294 Query: 303 ELEGFYGSDHCPVSLELSKEAAEAPE 226 L GSDHCPV LS + A + Sbjct: 295 LLPEVMGSDHCPVGAVLSVSSVPAKQ 320
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +3 Query: 258 QVKQDSDHFHKILPVQFHDHAFHMKQFCPSTLLKQQNSQYAF 383 Q +Q DH H QFHDH +QF +QQ Q F Sbjct: 198 QQQQFHDHHHHHQEQQFHDHHQQQQQFHDHQQQQQQQQQQQF 239
>MASZ_BRAJA (Q89UE3) Malate synthase G (EC 2.3.3.9)| Length = 721 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 379 HSLSSVLPNWIPRPREATLHVLFFVQVSV 465 H + W+P P ATLH L + QV+V Sbjct: 529 HPQAGATTAWVPSPTAATLHALHYHQVNV 557
>DNAJ_BACFN (Q5LED4) Chaperone protein dnaJ| Length = 394 Score = 29.6 bits (65), Expect = 6.1 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = -2 Query: 429 GFSWSGNPIGKYRGKRMRIDYFV----VSEGLKDRI-----VSCEMHGHGIELEGFYGSD 277 GF G+ K+RG +R+ + +S G++ + V C H HG EG GS+ Sbjct: 122 GFGGGGSQQRKFRGSDLRVKVKLNLKEISTGVEKKFKLKKYVPCS-HCHGTGAEGNSGSE 180 Query: 276 HCP 268 CP Sbjct: 181 TCP 183
>PERT_BORPE (P14283) Pertactin precursor (P.93) [Contains: Outer membrane| protein P.69] Length = 910 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2 Query: 315 GHGIELEGFYGSDHCPVSLELSKEAAEAPE 226 G G L+G+YG D S+EL++ EAPE Sbjct: 287 GFGPVLDGWYGVDVSGSSVELAQSIVEAPE 316
>MASZ_PSEPK (Q88QX8) Malate synthase G (EC 2.3.3.9)| Length = 725 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 379 HSLSSVLPNWIPRPREATLHVLFFVQVSV 465 H L+ W+P P ATLH L + +V V Sbjct: 530 HPLAGANTAWVPSPTAATLHALHYHKVDV 558
>MASZ_PSEAE (Q9I636) Malate synthase G (EC 2.3.3.9)| Length = 725 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 379 HSLSSVLPNWIPRPREATLHVLFFVQVSV 465 H L+ W+P P ATLH L + +V V Sbjct: 530 HPLAGANTAWVPSPTAATLHALHYHKVDV 558
>DNAJ_BACFR (Q64VI7) Chaperone protein dnaJ| Length = 394 Score = 29.3 bits (64), Expect = 8.0 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = -2 Query: 429 GFSWSGNPIGKYRGKRMRIDYFV----VSEGLKDRI-----VSCEMHGHGIELEGFYGSD 277 GF G+ K+RG +R+ + +S G++ + + C H HG EG GS+ Sbjct: 122 GFGGGGSQQRKFRGSDLRVKVKLNLKEISTGVEKKFKLKKYIPCS-HCHGTGAEGNSGSE 180 Query: 276 HCP 268 CP Sbjct: 181 TCP 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,861,944 Number of Sequences: 219361 Number of extensions: 1709752 Number of successful extensions: 3696 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3682 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
