ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 329 6e-87
2gb|AY108525.1| Zea mays PCO063593 mRNA sequence 281 1e-72
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
5emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007... 113 6e-22
6gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 105 2e-19
7gb|AY555143.1| Zea may BAC clone c573L14, complete sequence 84 6e-13
8emb|AL138889.9| Human DNA sequence from clone RP3-468B3 on chrom... 44 0.49
9emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on ch... 44 0.49
10gb|AC153010.3| Mus musculus BAC clone RP23-325H1 from chromosome... 42 1.9
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
12gb|AC124455.6| Mus musculus BAC clone RP24-129J9 from chromosome... 42 1.9
13gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, c... 42 1.9
14gb|AC100400.10| Mus musculus chromosome 15, clone RP23-134E16, c... 42 1.9
15gb|AC113054.14| Mus musculus chromosome 15, clone RP23-251L21, c... 42 1.9
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
18gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 7.7
19gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7... 40 7.7
20gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P1... 40 7.7
21gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 7.7
22gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, c... 40 7.7
23ref|XM_818950.1| Trypanosoma brucei TREU927 clone RPCI93-26C7 va... 40 7.7
24ref|XM_743935.1| Aspergillus fumigatus Af293 C6 transcription fa... 40 7.7
25emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 m... 40 7.7
26gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosom... 40 7.7
27emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 ... 40 7.7
28gb|AC164704.4| Mus musculus BAC clone RP23-238D20 from chromosom... 40 7.7
29emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chrom... 40 7.7
30emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 40 7.7
31gb|AC099770.11| Mus musculus Strain C57BL6/J chromosome 5 BAC, R... 40 7.7
32gb|AC109352.3| Homo sapiens BAC clone RP11-489P20 from 4, comple... 40 7.7
33gb|AC008739.5| Homo sapiens chromosome 19 clone CITB-E1_2542C24,... 40 7.7
34emb|BX324207.7| Zebrafish DNA sequence from clone DKEY-11F7 in l... 40 7.7
35gb|AC006954.8| Arabidopsis thaliana chromosome 2 clone F25P17 ma... 40 7.7
36gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 7.7
37gb|DP000036.1| Papio anubis target 106 genomic scaffold 40 7.7
38gb|DP000043.1| Macaca mulatta target 106 genomic scaffold 40 7.7
39gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold 40 7.7
40gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Can... 40 7.7
41gb|AC010887.11| Homo sapiens BAC clone RP11-395A12 from 2, compl... 40 7.7
42gb|AC108005.8| Homo sapiens chromosome 11, clone CTD-2515M10, co... 40 7.7
43dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 7.7
44gb|AC144774.3| Mus musculus BAC clone RP24-128I18 from 6, comple... 40 7.7
45emb|BX005138.5| Mouse DNA sequence from clone RP24-104L2 on chro... 40 7.7 
>dbj|AK070295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I11, full
            insert sequence
          Length = 1522

 Score =  329 bits (166), Expect = 6e-87
 Identities = 277/314 (88%)
 Strand = Plus / Minus

                                                                        
Query: 251  gagagctcaagtgaaacaggacagtgatcacttccataaaatccttccagttcaattcca 310
            ||||||||||||||||| || |||||||||||||||||||||||||| || || ||||||
Sbjct: 1192 gagagctcaagtgaaacggggcagtgatcacttccataaaatccttctagctctattcca 1133

                                                                        
Query: 311  tgaccatgcatttcacatgaaacaattctgtccttcaacccttctgaaacaacaaaatag 370
             ||||||| || ||||||||||| |||  ||||||||    |||||||||||  ||||||
Sbjct: 1132 cgaccatgaatgtcacatgaaactatttggtccttcagtttttctgaaacaaggaaatag 1073

                                                                        
Query: 371  tcaatacgcattctctttcctcggtacttcccaattggattcccagaccaagagaagcca 430
            ||||| ||||||||||| ||||||||||| ||||||||||  ||||||||||| ||||||
Sbjct: 1072 tcaattcgcattctcttccctcggtacttgccaattggatgtccagaccaagaaaagcca 1013

                                                                        
Query: 431  cactccatgtccttttctttgtgcaggtatctgtaagcatctactagctttccctgtgac 490
            || ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct: 1012 caatccatgtccttctctttgtgcagatatctgtaagcatctaccagctttccttgggac 953

                                                                        
Query: 491  aatatattgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcctct 550
            ||||||||||| |||||| | || ||||  ||||||||||||||||| ||||| ||||||
Sbjct: 952  aatatattgccgaagcgccgcctctctgacagggtgaatcctggctgtccacaatcctct 893

                          
Query: 551  ttatttggagggat 564
            ||||||||||||||
Sbjct: 892  ttatttggagggat 879
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>gb|AY108525.1| Zea mays PCO063593 mRNA sequence
          Length = 859

 Score =  281 bits (142), Expect = 1e-72
 Identities = 262/302 (86%)
 Strand = Plus / Minus

                                                                       
Query: 254 agctcaagtgaaacaggacagtgatcacttccataaaatccttccagttcaattccatga 313
           |||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| ||| | 
Sbjct: 450 agctcaagcgaaacagggcagtggtcacttccataaaatccatccaattcaatgccacgg 391

                                                                       
Query: 314 ccatgcatttcacatgaaacaattctgtccttcaacccttctgaaacaacaaaatagtca 373
           |||||||||||||||||||| ||||||||||| |||  ||| |||||||  || ||||| 
Sbjct: 390 ccatgcatttcacatgaaactattctgtcctttaactgttccgaaacaaggaagtagtcg 331

                                                                       
Query: 374 atacgcattctctttcctcggtacttcccaattggattcccagaccaagagaagccacac 433
           || | ||||||||||||||||||||| ||||||||||  || ||||||||||||||||  
Sbjct: 330 atcctcattctctttcctcggtacttgccaattggatgaccggaccaagagaagccaccg 271

                                                                       
Query: 434 tccatgtccttttctttgtgcaggtatctgtaagcatctactagctttccctgtgacaat 493
           || ||||||||||||||||||||||  |||||||||||||| |||||||| ||  | |||
Sbjct: 270 tctatgtccttttctttgtgcaggtgcctgtaagcatctaccagctttccttggaataat 211

                                                                       
Query: 494 atattgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcctcttta 553
           || |||||||| ||| |||| |||||  |||||||||||||||| |||||||||||||||
Sbjct: 210 atgttgccaaaacgccgtctctctgctggggtgaatcctggctgtccacagtcctcttta 151

             
Query: 554 tt 555
           ||
Sbjct: 150 tt 149
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 6e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                            
Query: 395      tacttcccaattggattcccagaccaagagaagccacactccatgtccttttctttgtgc 454
                ||||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 10508104 tacttgccaattggatgtccagaccaagaaaagccacaatccatgtccttctctttgtgc 10508163

                                             
Query: 455      aggtatctgtaagcatctactagctttcc 483
                || ||||||||||||||||| ||||||||
Sbjct: 10508164 agatatctgtaagcatctaccagctttcc 10508192



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                            
Query: 305      attccatgaccatgcatttcacatgaaacaattctgtccttcaacccttctgaaacaaca 364
                |||||| ||||||| || ||||||||||| |||  ||||||||    |||||||||||  
Sbjct: 10507513 attccacgaccatgaatgtcacatgaaactatttggtccttcagtttttctgaaacaagg 10507572

                                                 
Query: 365      aaatagtcaatacgcattctctttcctcggtac 397
                ||||||||||| ||||||||||| |||||||||
Sbjct: 10507573 aaatagtcaattcgcattctcttccctcggtac 10507605



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 251      gagagctcaagtgaaacaggacagtgatcacttccataaaatcct 295
                ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 10506184 gagagctcaagtgaaacggggcagtgatcacttccataaaatcct 10506228



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                            
Query: 488      gacaatatattgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcc 547
                |||||||||||||| |||||| | || ||||  ||||||||||||||||| ||||| |||
Sbjct: 10509796 gacaatatattgccgaagcgccgcctctctgacagggtgaatcctggctgtccacaatcc 10509855

                 
Query: 548      t 548
                |
Sbjct: 10509856 t 10509856
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 6e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                            
Query: 395      tacttcccaattggattcccagaccaagagaagccacactccatgtccttttctttgtgc 454
                ||||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 10507986 tacttgccaattggatgtccagaccaagaaaagccacaatccatgtccttctctttgtgc 10508045

                                             
Query: 455      aggtatctgtaagcatctactagctttcc 483
                || ||||||||||||||||| ||||||||
Sbjct: 10508046 agatatctgtaagcatctaccagctttcc 10508074



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                            
Query: 305      attccatgaccatgcatttcacatgaaacaattctgtccttcaacccttctgaaacaaca 364
                |||||| ||||||| || ||||||||||| |||  ||||||||    |||||||||||  
Sbjct: 10507395 attccacgaccatgaatgtcacatgaaactatttggtccttcagtttttctgaaacaagg 10507454

                                                 
Query: 365      aaatagtcaatacgcattctctttcctcggtac 397
                ||||||||||| ||||||||||| |||||||||
Sbjct: 10507455 aaatagtcaattcgcattctcttccctcggtac 10507487



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 251      gagagctcaagtgaaacaggacagtgatcacttccataaaatcct 295
                ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 10506066 gagagctcaagtgaaacggggcagtgatcacttccataaaatcct 10506110



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                            
Query: 488      gacaatatattgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcc 547
                |||||||||||||| |||||| | || ||||  ||||||||||||||||| ||||| |||
Sbjct: 10509678 gacaatatattgccgaagcgccgcctctctgacagggtgaatcctggctgtccacaatcc 10509737

                 
Query: 548      t 548
                |
Sbjct: 10509738 t 10509738
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>emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130672

 Score =  113 bits (57), Expect = 6e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                         
Query: 395   tacttcccaattggattcccagaccaagagaagccacactccatgtccttttctttgtgc 454
             ||||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 33910 tacttgccaattggatgtccagaccaagaaaagccacaatccatgtccttctctttgtgc 33969

                                          
Query: 455   aggtatctgtaagcatctactagctttcc 483
             || ||||||||||||||||| ||||||||
Sbjct: 33970 agatatctgtaagcatctaccagctttcc 33998



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                         
Query: 305   attccatgaccatgcatttcacatgaaacaattctgtccttcaacccttctgaaacaaca 364
             |||||| ||||||| || ||||||||||| |||  ||||||||    |||||||||||  
Sbjct: 33319 attccacgaccatgaatgtcacatgaaactatttggtccttcagtttttctgaaacaagg 33378

                                              
Query: 365   aaatagtcaatacgcattctctttcctcggtac 397
             ||||||||||| ||||||||||| |||||||||
Sbjct: 33379 aaatagtcaattcgcattctcttccctcggtac 33411



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 251   gagagctcaagtgaaacaggacagtgatcacttccataaaatcct 295
             ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 31990 gagagctcaagtgaaacggggcagtgatcacttccataaaatcct 32034



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 488   gacaatatattgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcc 547
             |||||||||||||| |||||| | || ||||  ||||||||||||||||| ||||| |||
Sbjct: 35602 gacaatatattgccgaagcgccgcctctctgacagggtgaatcctggctgtccacaatcc 35661

              
Query: 548   t 548
             |
Sbjct: 35662 t 35662
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
              fertilization-independent endosperm proteins, hypothetical
              protein, putative non-LTR retroelement reverse
              transcriptase, OCL5 protein, tryptophan synthase
              beta-subunit, hypothetical proteins, putative AP
              endonuclease, putative RNA polymerase II complex component
              SRB7, putative beta-1,3-glucanase, hypothetical protein,
              TNP2-like protein, hypothetical protein, putative
              phosphate/phosphoenolpyruvate translocator, putative
              protein, hypothetical proteins, putative
              galactosyltransferase family, hypothetical protein,
              putative cytochrome P450 family, putative lipid transfer
              protein, putative photoreceptor-interacting protein, and
              hypothetical protein genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 202197

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                          
Query: 395    tacttcccaattggattcccagaccaagagaagccacactccatgtccttttctttgtgc 454
              ||||| ||||||||||  || ||||||||||||||||  |||||||||||||||||||||
Sbjct: 101116 tacttgccaattggatgaccggaccaagagaagccaccatccatgtccttttctttgtgc 101175

                                           
Query: 455    aggtatctgtaagcatctactagctttcc 483
              ||||  |||||||||||||| ||||||||
Sbjct: 101176 aggtgcctgtaagcatctaccagctttcc 101204



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                          
Query: 301    ttcaattccatgaccatgcatttcacatgaaacaattctgtccttcaacccttctgaaac 360
              |||||| ||| | |||||||||||||||||||||||||||||||| |||   || |||||
Sbjct: 100264 ttcaatgccacggccatgcatttcacatgaaacaattctgtcctttaactgctccgaaac 100323

                                                   
Query: 361    aacaaaatagtcaatacgcattctctttcctcggtac 397
              ||  || ||||| || | |||||||||||||||||||
Sbjct: 100324 aaggaagtagtcgatcctcattctctttcctcggtac 100360



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 497    ttgccaaagcgctgtctttctgcaagggtgaatcctggctgcccacagtcct 548
              |||||||||||| | || |||||  |||||||||||||||||||||||||||
Sbjct: 102486 ttgccaaagcgccgcctctctgctggggtgaatcctggctgcccacagtcct 102537



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 246   ctttggagagctcaagtgaaacaggacagtgatcacttccataaaatcct 295
             ||||||| |||||||||| |||||| || || ||||||||||||||||||
Sbjct: 99552 ctttggaaagctcaagtgtaacagggcaatggtcacttccataaaatcct 99601
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>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence
          Length = 144792

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                          
Query: 296    tccagttcaattccatgaccatgcatttcacatgaaacaattctgtccttcaacccttct 355
              |||| |||||| ||| | |||||||||||||||||||| ||||||||||| |||  ||| 
Sbjct: 142151 tccaattcaatgccacggccatgcatttcacatgaaactattctgtcctttaactgttcc 142210

                                                        
Query: 356    gaaacaacaaaatagtcaatacgcattctctttcctcggtac 397
              |||||||  || ||||| || | |||||||||||||||||||
Sbjct: 142211 gaaacaaggaagtagtcgatcctcattctctttcctcggtac 142252



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 254    agctcaagtgaaacaggacagtgatcacttccataaaatcct 295
              |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 141176 agctcaagcgaaacagggcagtggtcacttccataaaatcct 141217
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>emb|AL138889.9| Human DNA sequence from clone RP3-468B3 on chromosome 6 Contains the 5'
             end of the MLN gene for motilin, part of a novel gene and
             a CpG island, complete sequence
          Length = 136886

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 530   cctggctgcccacagtcctctt 551
             ||||||||||||||||||||||
Sbjct: 14213 cctggctgcccacagtcctctt 14192
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>emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on chromosome 11 Contains a
              novel gene, the Tob1 gene for transducer of ErbB-2.1, the
              gene for a novel protein (AY100450) (WFIKKN-like growth and
              differentiation factor-associated serum protein 1) (Gasp1),
              a novel gene, the gene for a novel protein (3300001P08Rik)
              (Luc7a) and one CpG island, complete sequence
          Length = 188962

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 348    acccttctgaaacaacaaaata 369
              ||||||||||||||||||||||
Sbjct: 117685 acccttctgaaacaacaaaata 117706
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>gb|AC153010.3| Mus musculus BAC clone RP23-325H1 from chromosome 15, complete sequence
          Length = 230097

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 423   agaagccacactccatgtcct 443
             |||||||||||||||||||||
Sbjct: 47493 agaagccacactccatgtcct 47473
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 285     cataaaatccttccagttcaa 305
               |||||||||||||||||||||
Sbjct: 1321142 cataaaatccttccagttcaa 1321162
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>gb|AC124455.6| Mus musculus BAC clone RP24-129J9 from chromosome 15, complete sequence
          Length = 167059

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   agaagccacactccatgtcct 443
             |||||||||||||||||||||
Sbjct: 70093 agaagccacactccatgtcct 70113
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>gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, complete sequence
          Length = 143875

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    tggattcccagaccaagagaa 426
              |||||||||||||||||||||
Sbjct: 130981 tggattcccagaccaagagaa 131001
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>gb|AC100400.10| Mus musculus chromosome 15, clone RP23-134E16, complete sequence
          Length = 211743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    tttgtgcaggtatctgtaagc 468
              |||||||||||||||||||||
Sbjct: 187636 tttgtgcaggtatctgtaagc 187656
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>gb|AC113054.14| Mus musculus chromosome 15, clone RP23-251L21, complete sequence
          Length = 179314

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 448    tttgtgcaggtatctgtaagc 468
              |||||||||||||||||||||
Sbjct: 159718 tttgtgcaggtatctgtaagc 159698
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 285     cataaaatccttccagttcaa 305
               |||||||||||||||||||||
Sbjct: 1321140 cataaaatccttccagttcaa 1321160
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>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
              complete sequence
          Length = 146241

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    cataaaatccttccagttcaa 305
              |||||||||||||||||||||
Sbjct: 126044 cataaaatccttccagttcaa 126064
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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    cagaccaagagaagccacac 433
              ||||||||||||||||||||
Sbjct: 125534 cagaccaagagaagccacac 125515
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>gb|AC159422.1| Trypanosoma brucei chromosome 5 clone RPCI93-26C7, complete sequence
          Length = 144928

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    tgcttcggctgcttctttgg 251
              ||||||||||||||||||||
Sbjct: 111131 tgcttcggctgcttctttgg 111150
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>gb|AC159419.1| Trypanosoma brucei chromosome 5 clone RPCI93-25P15, complete sequence
          Length = 130539

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   tgcttcggctgcttctttgg 251
             ||||||||||||||||||||
Sbjct: 13009 tgcttcggctgcttctttgg 13028
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     tgcttcggctgcttctttgg 251
               ||||||||||||||||||||
Sbjct: 1424731 tgcttcggctgcttctttgg 1424750
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>gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, complete sequence
          Length = 174009

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   caagagaagccacactccat 438
             ||||||||||||||||||||
Sbjct: 33841 caagagaagccacactccat 33822
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>ref|XM_818950.1| Trypanosoma brucei TREU927 clone RPCI93-26C7 variant surface
            glycoprotein (Tb927.5.4770) partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  tgcttcggctgcttctttgg 251
            ||||||||||||||||||||
Sbjct: 1224 tgcttcggctgcttctttgg 1205
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>ref|XM_743935.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu7g04820)
            partial mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gttcaattccatgaccatgc 319
            ||||||||||||||||||||
Sbjct: 1032 gttcaattccatgaccatgc 1013
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>emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 map Xq28, complete
             sequence
          Length = 150061

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    cactctaattccaatccaga 56
             ||||||||||||||||||||
Sbjct: 72735 cactctaattccaatccaga 72716
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>gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosome 12, complete
             sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   cagtgatcacttccataaaatcct 295
             ||||||||||||| ||||||||||
Sbjct: 29434 cagtgatcacttctataaaatcct 29411
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>emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 in linkage group 16,
              complete sequence
          Length = 168543

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      aggaaaagaaacttctataaacat 28
              ||||||| ||||||||||||||||
Sbjct: 147223 aggaaaaaaaacttctataaacat 147246
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>gb|AC164704.4| Mus musculus BAC clone RP23-238D20 from chromosome 6, complete sequence
          Length = 189119

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    gtatctgtaagcatctacta 476
              ||||||||||||||||||||
Sbjct: 121843 gtatctgtaagcatctacta 121862
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>emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chromosome Xq25-27.1
             Contains the TNFSF5 gene for tumor necrosis factor
             (ligand) superfamily (member 5 ,hyper-IgM syndrome), a
             novel gene, the 3' end of the ARHGEF6 gene for  Rac/Cdc42
             guanine nucleotide exchange factor (GEF) 6 and a CpG
             island, complete sequence
          Length = 175706

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    cactctaattccaatccaga 56
             ||||||||||||||||||||
Sbjct: 46214 cactctaattccaatccaga 46195
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>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   tactagctttccctgtgaca 491
             ||||||||||||||||||||
Sbjct: 92933 tactagctttccctgtgaca 92914
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>gb|AC099770.11| Mus musculus Strain C57BL6/J chromosome 5 BAC, RP23-349C19, Complete
              Sequence, complete sequence
          Length = 191223

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    cagaccaagagaagccacac 433
              ||||||||||||||||||||
Sbjct: 181647 cagaccaagagaagccacac 181666
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>gb|AC109352.3| Homo sapiens BAC clone RP11-489P20 from 4, complete sequence
          Length = 157443

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aaaagaaacttctataaaca 27
              ||||||||||||||||||||
Sbjct: 131937 aaaagaaacttctataaaca 131918
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>gb|AC008739.5| Homo sapiens chromosome 19 clone CITB-E1_2542C24, complete sequence
          Length = 235532

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ggaaaagaaacttctataaa 25
              ||||||||||||||||||||
Sbjct: 191215 ggaaaagaaacttctataaa 191234
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>emb|BX324207.7| Zebrafish DNA sequence from clone DKEY-11F7 in linkage group 16,
             complete sequence
          Length = 251037

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     aggaaaagaaacttctataaacat 28
             ||||||| ||||||||||||||||
Sbjct: 50754 aggaaaaaaaacttctataaacat 50777
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>gb|AC006954.8| Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete
             sequence
          Length = 93701

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaaaggaaaagaaacttct 20
             ||||||||||||||||||||
Sbjct: 44618 aaaaaggaaaagaaacttct 44599
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   acttccataaaatccttcca 299
             ||||||||||||||||||||
Sbjct: 95730 acttccataaaatccttcca 95749
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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 436    catgtccttttctttgtgcaggta 459
              ||||||||||||||| ||||||||
Sbjct: 378675 catgtccttttctttttgcaggta 378652
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>gb|DP000043.1| Macaca mulatta target 106 genomic scaffold
          Length = 373358

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 436    catgtccttttctttgtgcaggta 459
              ||||||||||||||| ||||||||
Sbjct: 369066 catgtccttttctttttgcaggta 369043
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>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold
          Length = 583711

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 436    catgtccttttctttgtgcaggta 459
              ||||||||||||||| ||||||||
Sbjct: 494702 catgtccttttctttttgcaggta 494679
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>gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180869

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    caagagaagccacactccat 438
              ||||||||||||||||||||
Sbjct: 112886 caagagaagccacactccat 112867
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>gb|AC010887.11| Homo sapiens BAC clone RP11-395A12 from 2, complete sequence
          Length = 102117

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaaggaaaagaaacttctat 22
             ||||||||||||||||||||
Sbjct: 18167 aaaggaaaagaaacttctat 18186
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>gb|AC108005.8| Homo sapiens chromosome 11, clone CTD-2515M10, complete sequence
          Length = 165443

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   tgtgacaatatattgccaaa 504
             ||||||||||||||||||||
Sbjct: 16186 tgtgacaatatattgccaaa 16167
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    gcttctttggagagctcaag 261
              ||||||||||||||||||||
Sbjct: 206325 gcttctttggagagctcaag 206306
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>gb|AC144774.3| Mus musculus BAC clone RP24-128I18 from 6, complete sequence
          Length = 143838

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    gtatctgtaagcatctacta 476
              ||||||||||||||||||||
Sbjct: 141861 gtatctgtaagcatctacta 141842
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>emb|BX005138.5| Mouse DNA sequence from clone RP24-104L2 on chromosome 2, complete
             sequence
          Length = 96543

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   ccttcaacccttctgaaaca 361
             ||||||||||||||||||||
Sbjct: 75058 ccttcaacccttctgaaaca 75039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,495,229
Number of Sequences: 3902068
Number of extensions: 6495229
Number of successful extensions: 137432
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137063
Number of HSP's gapped (non-prelim): 365
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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