ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP1_ATRCA (P42767) Aquaporin PIP-type 55 8e-08
2PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 54 2e-07
3PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 53 3e-07
4PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 53 3e-07
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 48 1e-05
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 47 2e-05
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 44 1e-04
8PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 43 4e-04
9PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 41 0.002
10PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 41 0.002
11PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 41 0.002
12PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 40 0.003
13PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 40 0.003
14PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ... 39 0.006
15PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 36 0.040
16PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic... 36 0.040
17PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic... 36 0.053
18PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 35 0.069
19PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons... 35 0.12
20PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... 35 0.12
21PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic... 35 0.12
22PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ... 35 0.12
23PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ... 35 0.12
24PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic... 32 0.76
25PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic... 32 0.76
26PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic... 32 0.76
27PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi... 32 0.76
28PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening... 31 1.3
29SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.7
30SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.7
31SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 2.2
32UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 3.8
33CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 6.4
34SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 8.4
35TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 8.4

>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPFVGALAAAAYHQY+LRAAAIKALG
Sbjct: 248 VGPFVGALAAAAYHQYVLRAAAIKALG 274



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>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = -3

Query: 451 GPFVGALAAAAYHQYILRAAAIKALG 374
           GPF+GALAAAAYHQYILRAAAIKALG
Sbjct: 249 GPFIGALAAAAYHQYILRAAAIKALG 274



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPF+GALAAAAYHQYILRA+AIKALG
Sbjct: 246 VGPFLGALAAAAYHQYILRASAIKALG 272



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKAL 377
           VGPFVGALAAAAYHQYILRAAAIKAL
Sbjct: 244 VGPFVGALAAAAYHQYILRAAAIKAL 269



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 23/27 (85%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPFVGA  AA YHQYILRA AIKALG
Sbjct: 258 VGPFVGAAIAAFYHQYILRAGAIKALG 284



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGP +GA AAA YHQ+ILRAAAIKALG
Sbjct: 253 VGPMIGAAAAAFYHQFILRAAAIKALG 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPF GA  AA YHQ++LRA AIKALG
Sbjct: 252 VGPFAGAAIAAFYHQFVLRAGAIKALG 278



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPFVGA  AA YHQ++LRA A+KA G
Sbjct: 252 VGPFVGAAIAAFYHQFVLRAGAMKAYG 278



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 251 VGPFIGATIAAFYHQFVLRASGSKSLG 277



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 251 VGPFIGAAIAAFYHQFVLRASGSKSLG 277



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKALG 374
           VGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 253 VGPFIGAAIAAFYHQFVLRASGSKSLG 279



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIK 383
           VGP +GA  AAAYHQY+LRA+A K
Sbjct: 258 VGPLIGAAIAAAYHQYVLRASAAK 281



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIK 383
           VGP +GA  AAAYHQY+LRA+A K
Sbjct: 257 VGPLIGAAIAAAYHQYVLRASAAK 280



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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/25 (72%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF GA AA  YH YILR AA KA
Sbjct: 245 VGPFAGAAAAMIYHHYILRGAAAKA 269



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKAL 377
           VGP +GA  AAAYH+ +LR  A KAL
Sbjct: 255 VGPVIGAFLAAAYHKLVLRGEAAKAL 280



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>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)|
           (OsPIP2.4)
          Length = 286

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAA 389
           VGPF+GA  AA YHQ ILRA+A
Sbjct: 255 VGPFIGAAIAALYHQVILRASA 276



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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAA 389
           VGPF+GA  AA YHQ +LRA+A
Sbjct: 252 VGPFIGAAIAALYHQIVLRASA 273



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>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPFVGA  AA YHQ I+RA   K+
Sbjct: 263 VGPFVGAALAAIYHQVIIRAIPFKS 287



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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YHQ ++RA   K+
Sbjct: 264 VGPFIGAALAALYHQVVIRAIPFKS 288



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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YHQ ++RA   K+
Sbjct: 256 VGPFIGAALAAIYHQVVIRAIPFKS 280



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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YHQ ++RA   K+
Sbjct: 260 VGPFIGAALAALYHQLVIRAIPFKS 284



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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YHQ ++RA   K+
Sbjct: 261 VGPFIGAALAALYHQIVIRAIPFKS 285



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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YHQ ++RA   K+
Sbjct: 261 VGPFIGAALAALYHQIVIRAIPFKS 285



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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YH  ++RA   K+
Sbjct: 260 VGPFIGAALAALYHVIVIRAIPFKS 284



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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YH  ++RA   K+
Sbjct: 260 VGPFIGAALAALYHVVVIRAIPFKS 284



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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YH  ++RA   K+
Sbjct: 260 VGPFIGAALAALYHVVVIRAIPFKS 284



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>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRAAAIKA 380
           VGPF+GA  AA YH  ++RA   K+
Sbjct: 262 VGPFIGAALAAIYHVVVIRAIPFKS 286



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>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated|
           membrane protein) (RAMP)
          Length = 286

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 454 VGPFVGALAAAAYHQYILRA 395
           VGP +GA  AA YHQ I+RA
Sbjct: 261 VGPMIGAALAAIYHQIIIRA 280



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 368  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 WWPLSLSLTCMHRH*TRPDGHD 235
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,825,198
Number of Sequences: 219361
Number of extensions: 1041320
Number of successful extensions: 2532
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2531
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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