ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
2emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4,... 151 2e-33
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
4dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
6dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
7ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predic... 147 4e-32
8gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein... 84 5e-13
9gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein... 84 5e-13
10gb|AY109332.1| Zea mays CL502_5 mRNA sequence 84 5e-13
11gb|BT016583.1| Zea mays clone Contig416 mRNA sequence 76 1e-10
12gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds 76 1e-10
13gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, comp... 76 1e-10
14ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
15ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group... 68 3e-08
16ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group... 68 3e-08
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
18dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA ... 68 3e-08
19dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
20gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 68 3e-08
21dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
22dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
23dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
24dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
25dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
26ref|XM_844281.1| PREDICTED: Canis familiaris similar to cytochro... 44 0.39
27gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 44 0.39
28ref|XM_550578.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
29gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
31dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
32dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
33emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr... 42 1.6
34ref|NM_193436.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
35gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, com... 40 6.1
36gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, c... 40 6.1
37gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, compl... 40 6.1
38emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chr... 40 6.1
39emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 o... 40 6.1
40gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, compl... 40 6.1
41dbj|AB193040.1| Nicotiana tabacum NtTOM3 mRNA for tobamovirus mu... 40 6.1
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, comple... 40 6.1
44dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
45dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
46dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
47dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
48dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
49dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
50emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 6.1
51emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in... 40 6.1
52emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in ... 40 6.1
53emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chr... 40 6.1
54gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31)... 40 6.1
55emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 6.1 
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full
           insert sequence
          Length = 1067

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Minus

                                                                       
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
           |||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 837 gctcagttgctggggctgctccggaaggagcccagcgccttgatggctgccgcccggagg 778

                                                       
Query: 405 atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
           ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 777 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 734
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>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                         
Query: 345   gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
             |||||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 90998 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggagg 91057

                                                         
Query: 405   atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
             ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 91058 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 91101
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                           
Query: 345     gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
               |||||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 8906689 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggagg 8906748

                                                           
Query: 405     atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
               ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 8906749 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 8906792
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>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full
           insert sequence
          Length = 1308

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                       
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 950 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggagg 891

                                                       
Query: 405 atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
           ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 890 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 847
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>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full
           insert sequence
          Length = 1309

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                       
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 944 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggagg 885

                                                       
Query: 405 atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
           ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 884 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 841
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>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full
           insert sequence
          Length = 1296

 Score =  151 bits (76), Expect = 2e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                       
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggagg 404
           |||||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 938 gctcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggagg 879

                                                       
Query: 405 atgtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
           ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 878 atgtactggtgatacgccgccgccgccagcgctccgatgaacgg 835
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>ref|XM_475029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score =  147 bits (74), Expect = 4e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                       
Query: 347 tcagttgctccggctgctccggaaggagccgagcgccttgatggccgccgcccggaggat 406
           |||||||||  || |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 849 tcagttgctggggttgctccggaaggagcccagcgccttgatggctgccgcccggaggat 790

                                                     
Query: 407 gtactggtggtacgccgccgccgccagcgctccgacgaacgg 448
           ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 789 gtactggtgatacgccgccgccgccagcgctccgatgaacgg 748
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>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete
           cds
          Length = 1268

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||
Sbjct: 990 tgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggtggta 933
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>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete
           cds
          Length = 1171

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 937 tgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggtggta 880
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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 361  tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
            |||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||
Sbjct: 1640 tgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggtggta 1583
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>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence
          Length = 1348

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||  | |||||||||||||||||||||||
Sbjct: 918 tgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggtggta 861
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>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds
          Length = 1133

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||  | |||||||||||||||||||||||
Sbjct: 866 tgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggtggta 809
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>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds
          Length = 1328

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||  | |||||||||||||||||||||||
Sbjct: 962 tgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggtggta 905
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>ref|NM_187092.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1242

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 972 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 915
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>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1257

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 974 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 917
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>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1298

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 975 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 918
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 361      tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
                |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 15355846 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 15355789



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 410      ctggtggtacgccgccgccg 429
                ||||||||||||||||||||
Sbjct: 17089609 ctggtggtacgccgccgccg 17089590



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 410      ctggtggtacgccgccgccg 429
                ||||||||||||||||||||
Sbjct: 17084110 ctggtggtacgccgccgccg 17084091
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>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel
           protein, partial cds
          Length = 880

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| ||||||||||   | |||||||||||||||||||||||
Sbjct: 538 tgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggtggta 481
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>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_A06
          Length = 111673

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 361   tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
             |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 62845 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 62788
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>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
           complete cds
          Length = 1283

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| |||||||||||  | |||| ||||||||||||||||||
Sbjct: 939 tgctcctgaaggagccgagggccttgatggcgccggccctgaggatgtactggtggta 882
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>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full
           insert sequence
          Length = 1216

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 972 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 915
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>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full
           insert sequence
          Length = 1451

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 566 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 509
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>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full
           insert sequence
          Length = 1242

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 972 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 915
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>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full
           insert sequence
          Length = 1298

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| |||||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 975 tgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggtggta 918
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>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full
           insert sequence
          Length = 1257

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 361 tgctccggaaggagccgagcgccttgatggccgccgcccggaggatgtactggtggta 418
           |||||| || ||||||||| || ||||||||  | |||||||||||||||||||||||
Sbjct: 974 tgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggtggta 917
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>ref|XM_844281.1| PREDICTED: Canis familiaris similar to cytochrome P450, family 26,
           subfamily A, polypeptide 1 isoform 2, transcript variant
           2 (LOC486804), mRNA
          Length = 1583

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 420 gccgccgccgccagcgctccga 441
           ||||||||||||||||||||||
Sbjct: 62  gccgccgccgccagcgctccga 41
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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   actcacatgcatgcacagacac 211
             ||||||||||||||||||||||
Sbjct: 66966 actcacatgcatgcacagacac 66987
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>ref|XM_550578.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 gtactggtggtacgccgccgccgcc 431
           ||||||| |||||||||||||||||
Sbjct: 12  gtactggaggtacgccgccgccgcc 36
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 419     cgccgccgccgccagcgctcc 439
               |||||||||||||||||||||
Sbjct: 1747487 cgccgccgccgccagcgctcc 1747467
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 407     gtactggtggtacgccgccgccgcc 431
               ||||||| |||||||||||||||||
Sbjct: 1454544 gtactggaggtacgccgccgccgcc 1454568



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 410      ctggtggtacgccgccgccg 429
                ||||||||||||||||||||
Sbjct: 13780848 ctggtggtacgccgccgccg 13780829



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 419      cgccgccgccgccagcgctc 438
                ||||||||||||||||||||
Sbjct: 12763260 cgccgccgccgccagcgctc 12763241



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     ggtggtacgccgccgccgcc 431
               ||||||||||||||||||||
Sbjct: 1286443 ggtggtacgccgccgccgcc 1286462



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     ggtggtacgccgccgccgcc 431
               ||||||||||||||||||||
Sbjct: 1275146 ggtggtacgccgccgccgcc 1275165
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 407   gtactggtggtacgccgccgccgcc 431
             ||||||| |||||||||||||||||
Sbjct: 61830 gtactggaggtacgccgccgccgcc 61854
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 407    gtactggtggtacgccgccgccgcc 431
              ||||||| |||||||||||||||||
Sbjct: 163083 gtactggaggtacgccgccgccgcc 163107
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>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
             sequence
          Length = 201673

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tcacatgcatgcacagacact 212
             |||||||||||||||||||||
Sbjct: 42516 tcacatgcatgcacagacact 42536
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>ref|NM_193436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4317

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 412 ggtggtacgccgccgccgcc 431
           ||||||||||||||||||||
Sbjct: 34  ggtggtacgccgccgccgcc 53
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>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    cacatgcatgcacagacactgaac 216
              |||||||||||||| |||||||||
Sbjct: 133853 cacatgcatgcacacacactgaac 133830
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>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence
          Length = 245390

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 46326 cacatgcatgcacacacactgaac 46303
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>gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, complete sequence
          Length = 166644

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 86180 cacatgcatgcacacacactgaac 86203
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>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the
             5' end of the SLIT1 gene for slit homolog 1 (Drosophila),
             a novel gene and a CpG island, complete sequence
          Length = 172510

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tggaggagcagtactgccaa 254
             ||||||||||||||||||||
Sbjct: 39310 tggaggagcagtactgccaa 39329
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>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the
              3' end of a variant of the EPM2A gene for progressive
              myoclonus type 2 epilepsy (Lafora disease) protein
              (laforin) and a BTB/POZ domain zinc finger protein
              pseudogene, complete sequence
          Length = 115835

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    tgcatgcacagacactgaac 216
              ||||||||||||||||||||
Sbjct: 106284 tgcatgcacagacactgaac 106265
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>gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, complete sequence
          Length = 84991

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    aataaattaataattcatgctcca 33
             |||| |||||||||||||||||||
Sbjct: 49447 aatagattaataattcatgctcca 49424
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>dbj|AB193040.1| Nicotiana tabacum NtTOM3 mRNA for tobamovirus multiplication 3,
           complete cds
          Length = 1122

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 ggtggtacgccgccgccgcc 431
           ||||||||||||||||||||
Sbjct: 152 ggtggtacgccgccgccgcc 133
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ggtggtacgccgccgccgcc 431
                ||||||||||||||||||||
Sbjct: 20882888 ggtggtacgccgccgccgcc 20882869



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ggtggtacgccgccgccgcc 431
                ||||||||||||||||||||
Sbjct: 20873565 ggtggtacgccgccgccgcc 20873546
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>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    cacatgcatgcacagacact 212
              ||||||||||||||||||||
Sbjct: 179733 cacatgcatgcacagacact 179714
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>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1110C07
          Length = 173859

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ggtggtacgccgccgccgcc 431
              ||||||||||||||||||||
Sbjct: 101330 ggtggtacgccgccgccgcc 101311



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   ggtggtacgccgccgccgcc 431
             ||||||||||||||||||||
Sbjct: 92007 ggtggtacgccgccgccgcc 91988
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>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0542E10
          Length = 146196

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ggtggtacgccgccgccgcc 431
              ||||||||||||||||||||
Sbjct: 138396 ggtggtacgccgccgccgcc 138415



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ggtggtacgccgccgccgcc 431
              ||||||||||||||||||||
Sbjct: 127099 ggtggtacgccgccgccgcc 127118
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>dbj|AP005646.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1077E08
          Length = 145275

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ctggtggtacgccgccgccg 429
             ||||||||||||||||||||
Sbjct: 34988 ctggtggtacgccgccgccg 34969
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>dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0039F24
          Length = 132107

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    cgccgccgccgccagcgctc 438
              ||||||||||||||||||||
Sbjct: 116781 cgccgccgccgccagcgctc 116762
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>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0019A05
          Length = 144255

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cgccgccgccgccagcgctc 438
             ||||||||||||||||||||
Sbjct: 64037 cgccgccgccgccagcgctc 64018
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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ctggtggtacgccgccgccg 429
             ||||||||||||||||||||
Sbjct: 42735 ctggtggtacgccgccgccg 42716



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ctggtggtacgccgccgccg 429
             ||||||||||||||||||||
Sbjct: 37236 ctggtggtacgccgccgccg 37217
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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
              complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cggttttacaggttcaatcc 77
              ||||||||||||||||||||
Sbjct: 113082 cggttttacaggttcaatcc 113101
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>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14,
             complete sequence
          Length = 217550

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     acaataaattaataattcat 27
             ||||||||||||||||||||
Sbjct: 64381 acaataaattaataattcat 64400
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>emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in linkage group 19,
             complete sequence
          Length = 165012

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   gttgcattaaattattggcc 339
             ||||||||||||||||||||
Sbjct: 80678 gttgcattaaattattggcc 80697
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>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete
              sequence
          Length = 218753

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cacacaataaattaataatt 24
              ||||||||||||||||||||
Sbjct: 208348 cacacaataaattaataatt 208329
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>gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31) DNA sequence, complete
            sequence
          Length = 4858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 10   aataaattaataattcatgctcca 33
            |||| |||||||||||||||||||
Sbjct: 4251 aatagattaataattcatgctcca 4274
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>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
             sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     acacaataaattaataattc 25
             ||||||||||||||||||||
Sbjct: 83233 acacaataaattaataattc 83214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,017,183
Number of Sequences: 3902068
Number of extensions: 4017183
Number of successful extensions: 115957
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115097
Number of HSP's gapped (non-prelim): 860
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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