Clone Information

BLAST Search Result

Clone Name	rbart29h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...	49	4e-06
2	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	48	7e-06
3	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	47	9e-06
4	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	47	9e-06
5	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	47	9e-06
6	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	47	9e-06
7	RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...	47	1e-05
8	RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun...	47	1e-05
9	RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...	46	2e-05
10	RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...	46	2e-05
11	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	45	4e-05
12	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	45	6e-05
13	RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...	44	1e-04
14	ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)	32	0.49
15	GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked ...	30	1.1
16	MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precu...	29	2.4
17	PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11...	29	2.4
18	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	29	2.4
19	NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.1...	29	3.2
20	MASP2_MOUSE (Q91WP0) Mannan-binding lectin serine protease 2 pre...	29	3.2
21	CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 pr...	29	3.2
22	LGUL_SHIFL (P0AC83) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...	29	3.2
23	LGUL_ECOLI (P0AC81) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...	29	3.2
24	LGUL_ECO57 (P0AC82) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...	29	3.2
25	CCD70_MOUSE (Q9D9B0) Coiled-coil domain-containing protein 70 pr...	28	4.2
26	CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 pr...	28	4.2
27	BRI1_LYCPE (Q8L899) Systemin receptor SR160 precursor (EC 2.7.11...	28	5.5
28	BRI1_LYCES (Q8GUQ5) Brassinosteroid LRR receptor kinase precurso...	28	5.5
29	DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysi...	28	5.5
30	HSP1_CYNVA (Q8WP00) Sperm protamine P1	28	7.1
31	PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1) (C...	28	7.1
32	DYHC_ONCMY (P15305) Dynein heavy chain (DYHC) (Fragment)	28	7.1
33	DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (D...	28	7.1
34	LGUL_SALTY (P0A1Q2) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...	28	7.1
35	LGUL_SALTI (P0A1Q3) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...	28	7.1
36	YR02_CAEEL (Q10015) Hypothetical protein T25E4.2	27	9.3
37	P200_MYCGE (Q49429) Protein P200	27	9.3
38	FMT_BACSK (Q5WFK7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	27	9.3
39	FMT_THETN (Q8R9T1) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	27	9.3

>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1698

Query: 327  VATSYGIVAPGY 362
             + SY   +PGY
Sbjct: 1699 TSPSYSPTSPGY 1710



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1678 TSPSYSPTSPSY 1689



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1650 TSPSYSPTSPAY 1661



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1643 TSPSYSPTSPSY 1654



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1636 TSPSYSPTSPSY 1647



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1569 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1629 TSPSYSPTSPSY 1640



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1622 TSPSYSPTSPSY 1633



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1685 TSPSYSPTSPNY 1696



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1664 TSPSYSPTSPSY 1675



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1691

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1692 TSPNYSPTSPSY 1703



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1671 TSPSYSPTSPSY 1682



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1597 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1657 TSPAYSPTSPSY 1668



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1555 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1614

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1615 TSPSYSPTSPSY 1626



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1608 TSPSYSPTSPSY 1619



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1606 SPTSPSY 1612



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1646 SYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1705

Query: 327  VATSYGIVAPGY 362
             +  Y   +P Y
Sbjct: 1706 TSPGYSPGSPAY 1717



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P +   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1599 SPTSPSY 1605



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P + + +P +S   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1591

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1592 SPTSPSY 1598

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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 28/95 (29%), Positives = 39/95 (41%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +P SD + S        +  S   Y   +P Y   +P YS   P YS  + GY   +P Y
Sbjct: 1521 SPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1580

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
              + PGY     +Y    P Y   + SY   +P Y
Sbjct: 1581 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1615



 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1635 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694

Query: 327  VATSYGIVAPGY 362
             + +Y   +PGY
Sbjct: 1695 TSPAYSPTSPGY 1706



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y      Y    P Y  
Sbjct: 1656 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1715

Query: 327  VATSYGIVAPGYD 365
             + SYG  +P Y+
Sbjct: 1716 TSPSYGPTSPSYN 1728



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1628 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1688 TSPSYSPTSPAY 1699



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1681 TSPSYSPTSPSY 1692



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1674 TSPSYSPTSPSY 1685



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P Y   +P YS   P YS  + GY   +P Y    P Y     SY    P Y   
Sbjct: 1559 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1618

Query: 330  ATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 1619 SPSYSPTSPSY 1629



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1666

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1667 TSPSYSPTSPSY 1678



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1659

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1660 TSPSYSPTSPSY 1671



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = +3

Query: 105  SVTEDGHS----TYK-SCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAI 269
            S T  G+S    TY  S   Y   +P Y   +P YS   P YS  +  Y   +P Y    
Sbjct: 1567 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626

Query: 270  PGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            P Y     SY    P Y   + +Y   +P Y
Sbjct: 1627 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 26/86 (30%), Positives = 33/86 (38%)
 Frame = +3

Query: 105  SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGI 284
            S T  G+S       Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y  
Sbjct: 1560 SPTSPGYSPTSP--GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1617

Query: 285  VVVSYDMFVPKYDMVATSYGIVAPGY 362
               SY    P Y   + SY   +P Y
Sbjct: 1618 TSPSYSPTSPSYSPTSPSYSPTSPAY 1643



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1649 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1708

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1709 TSPSYSPTSPSY 1720



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1642 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1701

Query: 327  VATSYGIVAPGY 362
             +  Y   +P Y
Sbjct: 1702 TSPGYSPTSPSY 1713



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1593 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1652

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1653 TSPAYSPTSPSY 1664



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   
Sbjct: 1552 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1611

Query: 330  ATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 1612 SPSYSPTSPSY 1622



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKY 320
            SY   +P Y   +P YS   P YS  + GY   +P Y    P YG    SY+    KY
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y+ 
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNP 1729

Query: 327  VATSY 341
             +  Y
Sbjct: 1730 QSAKY 1734



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P Y   +P YS   P YS  +  Y   +P    A P Y      Y   +P Y   
Sbjct: 1753 YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYS-PSAGYSPTLPGYSPS 1811

Query: 330  AT 335
            +T
Sbjct: 1812 ST 1813



 Score = 27.7 bits (60), Expect = 7.1
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
 Frame = +3

Query: 105  SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYS------------IVASGYGMET 248
            S T  G+S      SY   +P Y   +P Y+    +YS              AS Y   +
Sbjct: 1700 SPTSPGYSPTSP--SYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTS 1757

Query: 249  PKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            P Y    P Y     SY    P Y   +      +P Y
Sbjct: 1758 PNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDY 1795



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/77 (28%), Positives = 27/77 (35%)
 Frame = +3

Query: 132  YKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFV 311
            Y   I+Y     R    +P YS   P YS  +  Y   +P Y  + P Y           
Sbjct: 1734 YSPSIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGAS 1792

Query: 312  PKYDMVATSYGIVAPGY 362
            P Y   A  Y    PGY
Sbjct: 1793 PDYSPSA-GYSPTLPGY 1808

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 105  SVTEDGHST----YKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIP 272
            S +  G+ST      S  SY   +P Y   +P YS   P YS  +  Y   +P Y    P
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618

Query: 273  GYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
             Y     SY    P Y   + SY   +P Y
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1665 TSPSYSPTSPSY 1676



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1651 TSPSYSPTSPSY 1662



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1644 TSPSYSPTSPSY 1655



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1658 TSPSYSPTSPSY 1669



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1735 TSPSYSPTSPSY 1746



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1728 TSPSYSPTSPSY 1739



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1721 TSPSYSPTSPSY 1732



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1714 TSPSYSPTSPSY 1725



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1707 TSPSYSPTSPSY 1718



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1700 TSPSYSPTSPSY 1711



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1693 TSPSYSPTSPSY 1704



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1686 TSPSYSPTSPSY 1697



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1679 TSPSYSPTSPSY 1690



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1672 TSPSYSPTSPSY 1683



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +3

Query: 126  STYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDM 305
            S YK   S  + +P    ++P Y +  P YS  + GY   +P Y+ + P Y     SY  
Sbjct: 1529 SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYST-SPAYMPSSPSYSPTSPSYSP 1587

Query: 306  FVPKYDMVATSYGIVAPGYDS 368
              P Y   + SY   +P Y +
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSA 1608



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741

Query: 327  VATSYGIVAP 356
             + SY   +P
Sbjct: 1742 TSPSYSPTSP 1751



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748

Query: 327  VATS 338
             + S
Sbjct: 1749 TSPS 1752

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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = +3

Query: 75  ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
           ++P+        T    S   S   Y   +P+Y   +P+YS   P+YS  +  Y   TPK
Sbjct: 325 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 384

Query: 255 YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
           Y    P Y      Y    PKY   + +Y   +P Y
Sbjct: 385 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 420



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +3

Query: 78  TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
           +PN      S +    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189

Query: 258 IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
               P Y     SY    P Y   + SY   +P Y
Sbjct: 190 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 224



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 125 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 184

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 185 TSPSYSPTSPSY 196



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 118 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 177

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 178 TSPSYSPTSPSY 189



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 111 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 170

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 171 TSPSYSPTSPSY 182



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = +3

Query: 75  ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
           ++P    +  + T    S   S  SY   +P+Y   +P YS   P Y+  +  Y   +PK
Sbjct: 304 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 363

Query: 255 YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
           Y    P Y     +Y    PKY   + +Y   +P Y
Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 399



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 174 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 233

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 234 TSPSYSPTSPNY 245



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 167 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 226

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 227 TSPSYSPTSPSY 238



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 160 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 219

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 220 TSPSYSPTSPSY 231



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 216 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 275

Query: 327 VATSYGIVAPGY 362
            + +Y   +P Y
Sbjct: 276 TSPNYSPTSPSY 287



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 181 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 240

Query: 327 VATSYGIVAPGY 362
            + +Y   +P Y
Sbjct: 241 TSPNYSPTSPNY 252



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P Y+   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 237 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 296

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 297 TSPSYSPSSPRY 308



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 202 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 261

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 262 TSPSYSPTSPNY 273



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 195 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 254

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 255 TSPSYSPTSPSY 266



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 223 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 282

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 283 TSPSYSPTSPSY 294



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 188 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 247

Query: 327 VATSYGIVAPGY 362
            + +Y   +P Y
Sbjct: 248 TSPNYTPTSPSY 259



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 37/95 (38%)
 Frame = +3

Query: 78  TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
           +PN      S +    S   +  SY   +PRY   +P Y+   P YS  +  Y   +PKY
Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336

Query: 258 IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
               P Y      Y    PKY   +  Y   +P Y
Sbjct: 337 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P Y+  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 230 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 289

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 290 TSPSYSPTSPSY 301



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 209 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 268

Query: 327 VATSYGIVAPGY 362
            + +Y   +P Y
Sbjct: 269 TSPNYTPTSPNY 280



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162 APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
           +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 109 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 168

Query: 342 GIVAPGY 362
              +P Y
Sbjct: 169 SPTSPSY 175



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = +3

Query: 78  TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
           +PN      + T    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301

Query: 258 IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
             + P Y     +Y    P Y   + SY   +P Y
Sbjct: 302 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +3

Query: 78  TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
           +PN      S +    S   +  +Y   +P Y   +P YS   P YS  +  Y   +P+Y
Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308

Query: 258 IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
               P Y     SY    P Y   +  Y   +P Y
Sbjct: 309 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 150 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
           Y   +P+Y   +P YS   P+YS  +  Y   +P Y    P Y     +Y    PKY   
Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 423

Query: 330 ATSYGIVAP 356
           + +Y   +P
Sbjct: 424 SPTYSPTSP 432



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +3

Query: 171 YDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIV 350
           Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY   
Sbjct: 105 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 164

Query: 351 APGY 362
           +P Y
Sbjct: 165 SPSY 168



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +3

Query: 150 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
           Y   +P Y    P+YS   P YS  +  Y   +PKY    P Y      Y    P Y   
Sbjct: 371 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 430

Query: 330 A---TSYGIVAPGY 362
           +   ++Y   +PGY
Sbjct: 431 SPKGSTYSPTSPGY 444



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = +3

Query: 150 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
           Y   +P+Y   +P+YS   P YS     Y   +P Y    P Y      Y    P Y   
Sbjct: 357 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 416

Query: 330 ATSYGIVAPGY 362
           +  Y   +P Y
Sbjct: 417 SPKYSPTSPTY 427



 Score = 35.0 bits (79), Expect = 0.045
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 180 VAPRYSVVGPRYSIVA-SGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAP 356
           ++P YS   P Y   +  GY  ++P Y    P Y     SY    P Y   + SY   +P
Sbjct: 86  MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 145

Query: 357 GY 362
            Y
Sbjct: 146 SY 147



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPR---YSIVASGYGMETPKYIIAIP 272
           +Y   +P+Y   +P YS   P+   YS  + GY   +P Y +  P
Sbjct: 412 TYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 456

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = +3

Query: 75   ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
            ++P+        T    S   S   Y   +P+Y   +P+YS   P+YS  +  Y   TPK
Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887

Query: 255  YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            Y    P Y      Y    PKY   + +Y   +P Y
Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y     SY    P Y   + SY   +P Y
Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1688 TSPSYSPTSPSY 1699



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1681 TSPSYSPTSPSY 1692



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1674 TSPSYSPTSPSY 1685



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = +3

Query: 75   ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
            ++P    +  + T    S   S  SY   +P+Y   +P YS   P Y+  +  Y   +PK
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK 1866

Query: 255  YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            Y    P Y     +Y    PKY   + +Y   +P Y
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1737 TSPSYSPTSPNY 1748



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1730 TSPSYSPTSPSY 1741



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1723 TSPSYSPTSPSY 1734



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1779 TSPNYSPTSPSY 1790



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1744 TSPNYSPTSPNY 1755



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P Y+   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1800 TSPSYSPSSPRY 1811



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1765 TSPSYSPTSPNY 1776



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1758 TSPSYSPTSPSY 1769



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1786 TSPSYSPTSPSY 1797



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1751 TSPNYTPTSPSY 1762



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 37/95 (38%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  SY   +PRY   +P Y+   P YS  +  Y   +PKY
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y      Y    PKY   +  Y   +P Y
Sbjct: 1840 TPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P Y+  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1793 TSPSYSPTSPSY 1804



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1772 TSPNYTPTSPNY 1783



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1672 SPTSPSY 1678



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      + T    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
              + P Y     +Y    P Y   + SY   +P Y
Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  +Y   +P Y   +P YS   P YS  +  Y   +P+Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y     SY    P Y   +  Y   +P Y
Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P+Y   +P YS   P+YS  +  Y   +P Y    P Y     +Y    PKY   
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926

Query: 330  ATSYGIVAP 356
            + +Y   +P
Sbjct: 1927 SPTYSPTSP 1935



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +3

Query: 171  YDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIV 350
            Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY   
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667

Query: 351  APGY 362
            +P Y
Sbjct: 1668 SPSY 1671



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P Y    P+YS   P YS  +  Y   +PKY    P Y      Y    P Y   
Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1933

Query: 330  A---TSYGIVAPGY 362
            +   ++Y   +PGY
Sbjct: 1934 SPKGSTYSPTSPGY 1947



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P+Y   +P+YS   P YS     Y   +P Y    P Y      Y    P Y   
Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919

Query: 330  ATSYGIVAPGY 362
            +  Y   +P Y
Sbjct: 1920 SPKYSPTSPTY 1930



 Score = 35.0 bits (79), Expect = 0.045
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 180  VAPRYSVVGPRYSIVA-SGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAP 356
            ++P YS   P Y   +  GY  ++P Y    P Y     SY    P Y   + SY   +P
Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648

Query: 357  GY 362
             Y
Sbjct: 1649 SY 1650



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPR---YSIVASGYGMETPKYIIAIP 272
            +Y   +P+Y   +P YS   P+   YS  + GY   +P Y +  P
Sbjct: 1915 TYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = +3

Query: 75   ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
            ++P+        T    S   S   Y   +P+Y   +P+YS   P+YS  +  Y   TPK
Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887

Query: 255  YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            Y    P Y      Y    PKY   + +Y   +P Y
Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y     SY    P Y   + SY   +P Y
Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1688 TSPSYSPTSPSY 1699



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1681 TSPSYSPTSPSY 1692



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1674 TSPSYSPTSPSY 1685



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = +3

Query: 75   ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
            ++P    +  + T    S   S  SY   +P+Y   +P YS   P Y+  +  Y   +PK
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866

Query: 255  YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            Y    P Y     +Y    PKY   + +Y   +P Y
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1737 TSPSYSPTSPNY 1748



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1730 TSPSYSPTSPSY 1741



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1723 TSPSYSPTSPSY 1734



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1779 TSPNYSPTSPSY 1790



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1744 TSPNYSPTSPNY 1755



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P Y+   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1800 TSPSYSPSSPRY 1811



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1765 TSPSYSPTSPNY 1776



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1758 TSPSYSPTSPSY 1769



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1786 TSPSYSPTSPSY 1797



 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1751 TSPNYTPTSPSY 1762



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 37/95 (38%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  SY   +PRY   +P Y+   P YS  +  Y   +PKY
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y      Y    PKY   +  Y   +P Y
Sbjct: 1840 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P Y+  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1793 TSPSYSPTSPSY 1804



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1772 TSPNYTPTSPNY 1783



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1672 SPTSPSY 1678



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      + T    S   +  SY   +P Y   +P YS   P YS  +  Y   +P Y
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
              + P Y     +Y    P Y   + SY   +P Y
Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PN      S +    S   +  +Y   +P Y   +P YS   P YS  +  Y   +P+Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y     SY    P Y   +  Y   +P Y
Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P+Y   +P YS   P+YS  +  Y   +P Y    P Y     +Y    PKY   
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926

Query: 330  ATSYGIVAP 356
            + +Y   +P
Sbjct: 1927 SPTYSPTSP 1935



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +3

Query: 171  YDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIV 350
            Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY   
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667

Query: 351  APGY 362
            +P Y
Sbjct: 1668 SPSY 1671



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P Y    P+YS   P YS  +  Y   +PKY    P Y      Y    P Y   
Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1933

Query: 330  A---TSYGIVAPGY 362
            +   ++Y   +PGY
Sbjct: 1934 SPKGSTYSPTSPGY 1947



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
            Y   +P+Y   +P+YS   P YS     Y   +P Y    P Y      Y    P Y   
Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919

Query: 330  ATSYGIVAPGY 362
            +  Y   +P Y
Sbjct: 1920 SPKYSPTSPTY 1930



 Score = 35.0 bits (79), Expect = 0.045
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 180  VAPRYSVVGPRYSIVA-SGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAP 356
            ++P YS   P Y   +  GY  ++P Y    P Y     SY    P Y   + SY   +P
Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648

Query: 357  GY 362
             Y
Sbjct: 1649 SY 1650



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPR---YSIVASGYGMETPKYIIAIP 272
            +Y   +P+Y   +P YS   P+   YS  + GY   +P Y +  P
Sbjct: 1915 TYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959

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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 26/92 (28%), Positives = 38/92 (41%)
 Frame = +3

Query: 87  SDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIA 266
           S + ++S   + + +Y S   Y   +P Y   +P YS   P YS  +  Y   +P Y   
Sbjct: 700 SPSAMNSPGYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 759

Query: 267 IPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            P Y     SY    P Y   + SY   +P Y
Sbjct: 760 SPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSY 791



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 790  SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 849

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 850  TSPSYSPTSPSY 861



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 843 TSPSYSPTSPSY 854



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 797  SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 856

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 857  TSPSYSPSSPSY 868



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 769 SYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 828

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 829 TSPSYSPTSPSY 840



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 762 SYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 821

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 822 TSPSYSPTSPSY 833



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 755 SYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 814

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 815 TSPSYSPTSPSY 826



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 748 SYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 807

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 808 TSPSYSPTSPSY 819



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 741 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSP 800

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 801 TSPSYSPTSPSY 812



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 734 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSP 793

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 794 TSPSYSPTSPSY 805



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 811  SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP 870

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 871  SSPSYSPSSPSY 882



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 804  SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 863

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 864  SSPSYSPSSPSY 875



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = +3

Query: 150 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMV 329
           Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   
Sbjct: 777 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 836

Query: 330 ATSYGIVAPGY 362
           + SY   +P Y
Sbjct: 837 SPSYSPTSPSY 847



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = +3

Query: 147 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
           +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y      Y    P Y  
Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSP 786

Query: 327 VATSYGIVAPGY 362
            + SY   +P Y
Sbjct: 787 TSPSYSPTSPSY 798



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 818  SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 877

Query: 327  VATSYGIVAPGY 362
             + SY   +P +
Sbjct: 878  SSPSYSPSSPTF 889

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>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCIS--YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETP 251
            T N++N   S T   +   +  ++  Y+ ++P Y + +P+YS   P+YS  +  Y   +P
Sbjct: 2257 TYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSP 2316

Query: 252  KYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAP 356
            KY    P Y      Y    PKY   +  Y   +P
Sbjct: 2317 KYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2351



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 159  VAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATS 338
            V  +Y++++P YSV  P+YS  +  Y   +PKY    P Y      Y    PKY   +  
Sbjct: 2279 VNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2338

Query: 339  YGIVAPGY 362
            Y   +P Y
Sbjct: 2339 YSPTSPKY 2346



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIV-------------- 287
            Y   +P+Y   +P+YS   P+YS  +  Y   +PKY    P Y                 
Sbjct: 2297 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNI 2356

Query: 288  ----VVSYDMFVPKYDMVATSYGIVAPGYD 365
                   Y +  PK+   + +Y I +P YD
Sbjct: 2357 ASPNYSPYSITSPKFSPTSPAYSISSPVYD 2386



 Score = 31.6 bits (70), Expect = 0.49
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
 Frame = +3

Query: 81   PNSDNKVSSVTEDGHSTYKSCISYDFVAPR----YDMVAPRYSVVGPRYSIVASGYGMET 248
            PN +N V        + Y      D  +P+    +++ +P YS   P Y+   + Y   +
Sbjct: 2214 PNINNNVIQ----SPNIYSPNPMLDIFSPKPQINHNIYSPSYSPTSPTYNANNAYYSPTS 2269

Query: 249  PK-----------YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            PK           Y +  P Y +    Y    PKY   +  Y   +P Y
Sbjct: 2270 PKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKY 2318

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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1642 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1701

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1702 TSPSYSPTSPSY 1713



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1635 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1695 TSPSYSPTSPSY 1706



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1628 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1688 TSPSYSPTSPSY 1699



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1681 TSPSYSPTSPSY 1692



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1674 TSPSYSPTSPSY 1685



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1667 TSPSYSPTSPSY 1678



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1659

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1660 TSPSYSPTSPSY 1671



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1593 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1652

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1653 TSPSYSPTSPSY 1664



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1586 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1646 TSPSYSPTSPSY 1657



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1639 TSPSYSPTSPSY 1650



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1572 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1631

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1632 TSPSYSPTSPSY 1643



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1565 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1625 TSPSYSPTSPSY 1636



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1558 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1618 TSPSYSPTSPSY 1629



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1709 TSPSYSPTSPQY 1720



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            +Y   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1551 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1610

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1611 TSPSYSPTSPSY 1622



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715

Query: 327  VATSYGIVAPGY 362
             +  Y   +P Y
Sbjct: 1716 TSPQYSPRSPSY 1727



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1609 SPTSPSY 1615



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +3

Query: 153  DFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVA 332
            D  +P +   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   +
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1598

Query: 333  TSYGIVAPGY 362
             SY   +P Y
Sbjct: 1599 PSYSPTSPSY 1608

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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1500 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1559

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1560 TSPSYSPTSPSY 1571



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1493 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1552

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1553 TSPSYSPTSPSY 1564



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1486 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1545

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1546 TSPSYSPTSPSY 1557



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1539 TSPSYSPTSPSY 1550



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1472 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1531

Query: 327  VATSYGIVAPGY 362
             + SY   +P Y
Sbjct: 1532 TSPSYSPTSPSY 1543



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSY 341
            +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + SY
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529

Query: 342  GIVAPGY 362
               +P Y
Sbjct: 1530 SPTSPSY 1536



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1507 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1566

Query: 327  VATSYGI 347
             + SY +
Sbjct: 1567 TSPSYSV 1573



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 27/96 (28%), Positives = 38/96 (39%)
 Frame = +3

Query: 75   ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPK 254
            +TP+SD+   S      +  +   S D +  R    +P YS   P YS  +  Y   +P 
Sbjct: 1435 STPSSDSFSISSGNWSPTHLEMAYSRD-LGERLSPTSPSYSPTSPSYSPTSPSYSPTSPS 1493

Query: 255  YIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
            Y    P Y     SY    P Y   + SY   +P Y
Sbjct: 1494 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y +
Sbjct: 1514 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSV 1573

Query: 327  VATSY 341
              +S+
Sbjct: 1574 SMSSF 1578

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P+Y  
Sbjct: 1622 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSP 1681

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1682 TSPTYSPTSPTY 1693



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P+Y    P Y     +Y    P Y  
Sbjct: 1643 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1702

Query: 327  VATSYGIVAPGYD 365
             + +Y   +P Y+
Sbjct: 1703 TSPTYSPTSPSYE 1715



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +3

Query: 159  VAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATS 338
            V+P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y   + S
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 339  YGIVAPGY 362
            Y   +P Y
Sbjct: 1672 YSPSSPRY 1679



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMF---VPK 317
            SY   +P Y   +PRYS   P YS  +  Y   +P Y    P Y     SY+ +    PK
Sbjct: 1664 SYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPK 1723

Query: 318  YDMVATSYGIVAPGY 362
            Y   + +Y   +P Y
Sbjct: 1724 YSPSSPTYSPTSPSY 1738



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1615 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1674

Query: 327  VATSYGIVAPGY 362
             +  Y   +P Y
Sbjct: 1675 SSPRYSPTSPTY 1686



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y  + P Y     +Y    P Y  
Sbjct: 1636 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSP 1695

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1696 TSPTYSPTSPTY 1707



 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y      Y    P Y  
Sbjct: 1629 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSP 1688

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1689 TSPTYSPTSPTY 1700



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIVA---SGYGMETPKYIIAIPGYGIVVVSYDMFVPKY 320
            Y   +P + M +P YS   P YS  +    G    +P Y    P Y     SY    P Y
Sbjct: 1578 YSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSY 1637

Query: 321  DMVATSYGIVAPGY 362
               + SY   +P Y
Sbjct: 1638 SPTSPSYSPTSPSY 1651



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRY---SVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKY 320
            Y   +P Y   +P +   S V P YS  +  Y   +P Y    P Y     SY    P Y
Sbjct: 1592 YSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1651

Query: 321  DMVATSYGIVAPGY 362
               + SY   +P Y
Sbjct: 1652 SPTSPSYSPTSPSY 1665



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     +Y    P Y  
Sbjct: 1650 SYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSP 1709

Query: 327  VATSYGIVAP 356
             + SY   +P
Sbjct: 1710 TSPSYEGYSP 1719



 Score = 35.0 bits (79), Expect = 0.045
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
 Frame = +3

Query: 129  TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYD-- 302
            T  S   Y   +P+Y   +P YS   P YS  +  Y   +P+Y  + P Y     +Y+  
Sbjct: 1710 TSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPT 1769

Query: 303  ----MFVPKYDMVATSYGIVAPGY 362
                   P+Y   + +Y   +P Y
Sbjct: 1770 SPRAFSSPQYSPTSPTYSPTSPSY 1793



 Score = 33.9 bits (76), Expect = 0.099
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
 Frame = +3

Query: 129  TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIA---IPG----YGIV 287
            TY       F +P+Y   +P YS   P Y+  +  Y   +P Y  +    PG    Y   
Sbjct: 1765 TYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPS 1824

Query: 288  VVSYDMFVPKYDMVATSYGIVAPGYD 365
              +Y    P Y   + SY   +P YD
Sbjct: 1825 SPTYSPSSPTYSPASPSYSPSSPTYD 1850



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRY---SIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPK 317
            +Y   +P Y   +P YS   P Y   S  +  Y   +P Y    P Y      Y    P+
Sbjct: 1692 TYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQ 1751

Query: 318  YDMVATSYGIVAPGYD 365
            Y   + +Y   +P Y+
Sbjct: 1752 YSPSSPTYTPSSPTYN 1767

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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P+Y    P Y     +Y    P Y  
Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1698

Query: 327  VATSYGIVAPGYDS 368
             + +Y   +P Y+S
Sbjct: 1699 TSPTYSPTSPSYES 1712



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y  + P Y     SY    P+Y  
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1678 TSPTYSPTSPTY 1689



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 32/86 (37%)
 Frame = +3

Query: 105  SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGI 284
            S T   +S          V+P Y   +P YS   P YS  +  Y   +P Y    P Y  
Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649

Query: 285  VVVSYDMFVPKYDMVATSYGIVAPGY 362
               SY    P Y   + SY   +P Y
Sbjct: 1650 TSPSYSPSSPSYSPSSPSYSPSSPRY 1675



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y  + P Y     +Y    P Y  
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSP 1691

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1692 TSPTYSPTSPTY 1703



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y  + P Y      Y    P Y  
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSP 1684

Query: 327  VATSYGIVAPGY 362
             + +Y   +P Y
Sbjct: 1685 TSPTYSPTSPTY 1696



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDM 326
            SY   +P Y   +P YS   P YS  +  Y   +P Y    P Y     SY    P Y  
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 1670

Query: 327  VATSYGIVAPGY 362
             +  Y   +P Y
Sbjct: 1671 SSPRYSPTSPTY 1682



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGPRYSIV--ASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYD 323
            Y   +P++ M +P YS   P YS    A+G    +P Y    P Y     SY    P Y 
Sbjct: 1575 YSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYS 1634

Query: 324  MVATSYGIVAPGY 362
              + SY   +P Y
Sbjct: 1635 PTSPSYSPTSPSY 1647



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 27/95 (28%), Positives = 37/95 (38%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +P+      S +    S   S  SY   +PRY   +P YS   P YS  +  Y   +P Y
Sbjct: 1644 SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1703

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                P Y      Y    PKY   + +Y   +P Y
Sbjct: 1704 SPTSPSYE-SGGGYSPSSPKYSPSSPTYSPTSPSY 1737



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 25/86 (29%), Positives = 32/86 (37%)
 Frame = +3

Query: 105  SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGI 284
            S+T   +S      S    A     V+P YS   P YS  +  Y   +P Y    P Y  
Sbjct: 1583 SMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642

Query: 285  VVVSYDMFVPKYDMVATSYGIVAPGY 362
               SY    P Y   + SY   +P Y
Sbjct: 1643 TSPSYSPTSPSYSPSSPSYSPSSPSY 1668



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
 Frame = +3

Query: 114  EDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGY----- 278
            E G     S   Y   +P Y   +P YS   P+YS  +  Y   +P Y  + P Y     
Sbjct: 1711 ESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1770

Query: 279  -GIVVVSYDMFVPKYDMVATSYGIVAPGY 362
             G     Y    P Y   + SY   +P Y
Sbjct: 1771 RGFSSPQYSPTSPTYSPTSPSYTPSSPQY 1799



 Score = 37.0 bits (84), Expect = 0.012
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +3

Query: 129  TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYD-- 302
            +Y+S   Y   +P+Y   +P YS   P YS  +  Y   +P+Y  + P Y     +Y+  
Sbjct: 1709 SYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPT 1768

Query: 303  ----MFVPKYDMVATSYGIVAPGY 362
                   P+Y   + +Y   +P Y
Sbjct: 1769 SPRGFSSPQYSPTSPTYSPTSPSY 1792



 Score = 35.0 bits (79), Expect = 0.045
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
 Frame = +3

Query: 129  TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYIIA---IPG----YGIV 287
            TY       F +P+Y   +P YS   P Y+  +  Y   +P Y  +    PG    Y   
Sbjct: 1764 TYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPT 1823

Query: 288  VVSYDMFVPKYDMVATSYGIVAPGYD 365
              +Y    P Y   + SY   +P YD
Sbjct: 1824 SPTYSPSSPTYSPASPSYSPSSPTYD 1849



 Score = 32.0 bits (71), Expect = 0.38
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYII-------AIPGYGIVVVSYDM 305
            +Y   +P Y   +P YS   P Y     GY   +PKY           P Y      Y  
Sbjct: 1688 TYSPTSPTYSPTSPTYSPTSPSYES-GGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSP 1746

Query: 306  FVPKYDMVATSYGIVAPGYD 365
              P+Y   + +Y   +P Y+
Sbjct: 1747 TSPQYSPSSPTYTPSSPTYN 1766

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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/102 (27%), Positives = 42/102 (41%)
 Frame = +3

Query: 57   PTK*L*ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGY 236
            PT    ++P+     S++   G++   S  +Y   +P Y   +P YS   P YS  +  Y
Sbjct: 1647 PTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1706

Query: 237  GMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGY 362
               +P Y    P Y  V  SY    P Y   +  Y   +P Y
Sbjct: 1707 SPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAY 1747



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 30/96 (31%), Positives = 41/96 (42%)
 Frame = +3

Query: 78   TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKY 257
            +PNS +   S T   +S   S  SY   +P Y   +P YS   P Y+ V   Y   +P Y
Sbjct: 1679 SPNSPSY--SPTSPSYSP--SSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNY 1734

Query: 258  IIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYD 365
              A P Y     +Y     KY   + +Y   +P YD
Sbjct: 1735 S-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = +3

Query: 171  YDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIV 350
            Y   +  YS   P YS  +  Y   +P Y    P Y     SY    P Y  V  SY   
Sbjct: 1671 YSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPT 1730

Query: 351  APGYDS 368
            +P Y +
Sbjct: 1731 SPNYSA 1736



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +3

Query: 150  YDFVAPRYDMVAPRYSVVGP------RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFV 311
            Y   +P+Y   +P YS   P      +YS   S Y   +P+Y   +  Y      Y    
Sbjct: 1784 YSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1843

Query: 312  PKYDMVATSYGIVAPGY 362
            P Y   A +Y   +P Y
Sbjct: 1844 PTYTPTARNYSPTSPMY 1860



 Score = 32.3 bits (72), Expect = 0.29
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = +3

Query: 168  RYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATS-YG 344
            +Y      YS   PRYS   S Y   + KY    P Y     +Y    P Y   A S Y 
Sbjct: 1810 QYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYS 1869

Query: 345  IVAPGY 362
              +P Y
Sbjct: 1870 PTSPAY 1875



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETPKY--IIAIPGYGIVVVSYDMFVPKYDMVAT 335
            +P+Y   +P YS  G +YS  +  Y   +P Y      P Y      Y    PKY   + 
Sbjct: 1737 SPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSP 1796

Query: 336  SYGIVAP 356
             Y   +P
Sbjct: 1797 LYSPSSP 1803



 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
 Frame = +3

Query: 132  YKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGY--GMETPKYIIAIPGYGIVVVSYDM 305
            Y +   Y   +P Y     +YS   P YS  +  Y     +P+Y    P Y      Y  
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1793

Query: 306  FVPKY 320
              P Y
Sbjct: 1794 TSPLY 1798



 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 19/88 (21%)
 Frame = +3

Query: 156  FVAPRYDMVAPRYSVVGPRYSIVASGYGMETPKYI-----------------IAIPG--Y 278
            + +PRY    P ++     YS  +SGY   +P Y                  I  PG  Y
Sbjct: 1612 YASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAY 1671

Query: 279  GIVVVSYDMFVPKYDMVATSYGIVAPGY 362
                 +Y    P Y   + SY   +P Y
Sbjct: 1672 SPSSSNYSPNSPSYSPTSPSYSPSSPSY 1699



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
 Frame = +3

Query: 162  APRYDMVAPRYSVVGPRYSIVASGYGMETP------KYIIAIPGYGIVVVSYDMFVPKYD 323
            +P+Y   +P+YS   P+YS  +  Y   +P      +Y      Y      Y   +  Y 
Sbjct: 1774 SPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYS 1833

Query: 324  MVATSYGIVAPGY 362
              +T Y   +P Y
Sbjct: 1834 PSSTKYSPTSPTY 1846

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>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)|
          Length = 1767

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 27  IFMRLHNTIGPTK*L*ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMV 182
           I ++LH T+  TK L    NSD+ VS V +  HS + S      + P  D++
Sbjct: 795 IIVKLHETLSKTKDLSEAANSDSSVSFVCDVVHSFFSSAGGGLLMPPSEDLL 846

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>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/47 (25%), Positives = 30/47 (63%)
 Frame = -1

Query: 291 QQQCRIREWQ*CIWEFPSRIRKPQYCIWDQQHCIWEQPCRIWEQQSR 151
           +Q+ R+R+ +  + +   R++K +  +WDQ+  +W++  R+ +Q+ R
Sbjct: 383 KQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEER 429



 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = -1

Query: 363 RNRERQCRNW*QPCRIWGQTYRN*QQQCRIREWQ*CIWEFPSRIRKPQYCIWDQQHCIWE 184
           R +ER C    Q  R+  Q     +Q  R+R+ +  + +   R+RK +  +  Q+  +W+
Sbjct: 355 REQERLCE---QNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWD 411

Query: 183 QPCRIWEQQSR 151
           Q  R+W+++ R
Sbjct: 412 QEERLWKKEER 422

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>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC|
           3.4.21.104) (Mannose-binding protein-associated serine
           protease 2) (MASP-2) (MBL-associated serine protease 2)
           [Contains: Mannan-binding lectin serine protease 2 A
           chain; Mannan-bin
          Length = 685

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 257 HYCHSRIR--HCCCQLRYVCPQIRHGCYQL 340
           HYCH+ +   +C C++ Y+  Q +H C  L
Sbjct: 154 HYCHNYLGGYYCSCRVGYILHQNKHTCSAL 183

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>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1021

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 121 PSSVTELTLLSEFGVAHNHLVGPI 50
           P S+ +L+ LS F VA+N L GPI
Sbjct: 598 PPSLVKLSFLSTFSVAYNKLSGPI 621

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
 Frame = +1

Query: 46   TRLAPPSDCELHRTRTTRSAPSRKMDTPLTNHASXXXXXXXXXXXXXXXXXXXXXXXXXX 225
            T   P     L  T T+++ P   M T  T H S                          
Sbjct: 3036 TSFTPIPSSTLGTTGTSQNRPPHPMATMSTIHPSSTPETTHTSTVLTTKATTTRATSSMS 3095

Query: 226  XXX----TGWKLPNTLLPFPDTALLLSVTICLSPNTTWLLPVTALSLPVTI 366
                   T W L         TA L   T   +P TTW+L   + +  VT+
Sbjct: 3096 TPSSTPGTTWILTELTTAATTTAALPHGTPSSTPGTTWILTEPSTTATVTV 3146

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>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)|
          Length = 924

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 121 PSSVTELTLLSEFGVAHNHLVGPI 50
           PSSVTE+T L    ++HNH  G I
Sbjct: 422 PSSVTEMTKLQILNLSHNHFDGYI 445

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>MASP2_MOUSE (Q91WP0) Mannan-binding lectin serine protease 2 precursor (EC|
           3.4.21.104) (Mannose-binding protein-associated serine
           protease 2) (MASP-2) (MBL-associated serine protease 2)
           [Contains: Mannan-binding lectin serine protease 2 A
           chain; Mannan-b
          Length = 685

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 257 HYCHSRIR--HCCCQLRYVCPQIRHGCYQL 340
           HYCH+ +   +C C+  YV  Q +H C  L
Sbjct: 154 HYCHNYLGGYYCSCRAGYVLHQNKHTCSAL 183

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>CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 precursor|
          Length = 232

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 10/60 (16%), Positives = 28/60 (46%)
 Frame = -1

Query: 336 W*QPCRIWGQTYRN*QQQCRIREWQ*CIWEFPSRIRKPQYCIWDQQHCIWEQPCRIWEQQ 157
           W +   +W +     Q+   + E +  +W     + + +  +W+ +  +WE+   +WE++
Sbjct: 136 WKEDNALWEKDRNLLQEDKALWEEEKALWVEERALLEEEKALWEDKTSLWEEENALWEEE 195

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>LGUL_SHIFL (P0AC83) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)|
           (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde
           mutase) (S-D-lactoylglutathione methylglyoxal lyase)
          Length = 135

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 210 RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYDS 368
           +YS+   GYG ET + +I +        +Y+  V KY++  T+YG +A   D+
Sbjct: 38  KYSLAFVGYGPETEEAVIEL--------TYNWGVDKYEL-GTAYGHIALSVDN 81

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>LGUL_ECOLI (P0AC81) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)|
           (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde
           mutase) (S-D-lactoylglutathione methylglyoxal lyase)
          Length = 135

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 210 RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYDS 368
           +YS+   GYG ET + +I +        +Y+  V KY++  T+YG +A   D+
Sbjct: 38  KYSLAFVGYGPETEEAVIEL--------TYNWGVDKYEL-GTAYGHIALSVDN 81

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>LGUL_ECO57 (P0AC82) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)|
           (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde
           mutase) (S-D-lactoylglutathione methylglyoxal lyase)
          Length = 135

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 210 RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYDS 368
           +YS+   GYG ET + +I +        +Y+  V KY++  T+YG +A   D+
Sbjct: 38  KYSLAFVGYGPETEEAVIEL--------TYNWGVDKYEL-GTAYGHIALSVDN 81

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>CCD70_MOUSE (Q9D9B0) Coiled-coil domain-containing protein 70 precursor|
          Length = 223

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/60 (16%), Positives = 27/60 (45%)
 Frame = -1

Query: 336 W*QPCRIWGQTYRN*QQQCRIREWQ*CIWEFPSRIRKPQYCIWDQQHCIWEQPCRIWEQQ 157
           W +   +W +     Q+   + E +  +W     +   +  +W+ +  +WE+   +WE++
Sbjct: 125 WREDNALWERDRNLLQEDKALWEEEKALWVEERALLAEEKALWEDKKSLWEEENALWEEE 184

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>CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 precursor|
          Length = 233

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/60 (16%), Positives = 28/60 (46%)
 Frame = -1

Query: 336 W*QPCRIWGQTYRN*QQQCRIREWQ*CIWEFPSRIRKPQYCIWDQQHCIWEQPCRIWEQQ 157
           W +   +W +     Q+   + E +  +W     + + +  +W+ +  +WE+   +WE++
Sbjct: 136 WKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEGEKALWEDKTSLWEEENALWEEE 195

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>BRI1_LYCPE (Q8L899) Systemin receptor SR160 precursor (EC 2.7.11.1)|
           (Brassinosteroid LRR receptor kinase)
          Length = 1207

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = -3

Query: 328 TMSYLGTNIS*LTTTMPYPGMAIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS* 149
           +M +L  + + L  ++P    A+ YL         +IL LG   L  G     LG  K+ 
Sbjct: 664 SMIFLDLSYNKLEGSIPKELGAMYYL---------SILNLGHNDLS-GMIPQQLGGLKNV 713

Query: 148 EMHDL*VE-----CPSSVTELTLLSEFGVAHNHLVGPI 50
            + DL         P+S+T LTLL E  +++N+L G I
Sbjct: 714 AILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMI 751

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>BRI1_LYCES (Q8GUQ5) Brassinosteroid LRR receptor kinase precursor (EC|
           2.7.11.1) (tBRI1) (Altered brassinolide sensitivity 1)
           (Systemin receptor SR160)
          Length = 1207

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = -3

Query: 328 TMSYLGTNIS*LTTTMPYPGMAIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS* 149
           +M +L  + + L  ++P    A+ YL         +IL LG   L  G     LG  K+ 
Sbjct: 664 SMIFLDLSYNKLEGSIPKELGAMYYL---------SILNLGHNDLS-GMIPQQLGGLKNV 713

Query: 148 EMHDL*VE-----CPSSVTELTLLSEFGVAHNHLVGPI 50
            + DL         P+S+T LTLL E  +++N+L G I
Sbjct: 714 AILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMI 751

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>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (DOT1-like protein)
          Length = 1739

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
 Frame = +1

Query: 250  PNTLLPFPDTAL-------LLSVTICLSPNTTWLLPVTALSLP 357
            PN  LP P T L       LL     L PN  +L P +A SLP
Sbjct: 1625 PNAALPPPPTLLASNPEPALLQSLASLPPNQAFLPPTSAASLP 1667

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>HSP1_CYNVA (Q8WP00) Sperm protamine P1|
          Length = 46

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 RHCCCQLRYVCPQIRHGCYQLRHCRSR 358
           R+ CC+ R  C + R  C + R CR R
Sbjct: 2   RYRCCRSRSRCRRRRRSCRRRRRCRRR 28

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>PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
          Length = 335

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 280 PYPGMAIMYLGVSIPYPEATILYLGPTTLYLGATMSY 170
           PYPG    Y G   PYP     Y GP   Y G    Y
Sbjct: 32  PYPGPQGPYAGPQGPYPGPQGPYAGPQGPYPGPQPGY 68

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>DYHC_ONCMY (P15305) Dynein heavy chain (DYHC) (Fragment)|
          Length = 515

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 168 RYDMVAPRYSVVGPRYSIVASGYGMETPKYIIAIPGYGIV-VVSYDMFVPKYDMVATSYG 344
           +Y +   +YS+   +YSI    Y +   +Y I +  Y I+ V+ Y + V +Y +    Y 
Sbjct: 319 QYSIHVIQYSIHVIQYSIHVIQYSIHVIQYSIHVIQYSILHVIQYSIHVIQYSIHVIQYS 378

Query: 345 I 347
           I
Sbjct: 379 I 379

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>DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride|
           kinase zeta) (DGK-zeta) (DAG kinase zeta)
          Length = 1117

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 219 YCIWDQQHCIWEQPCRIWEQQSRRRCMICKWSVH 118
           +C   +Q+C+     R+ +  SRR+C  CK  VH
Sbjct: 298 FCYVGEQYCV----ARMLKSVSRRKCAACKIVVH 327

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>LGUL_SALTY (P0A1Q2) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)|
           (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde
           mutase) (S-D-lactoylglutathione methylglyoxal lyase)
          Length = 135

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 210 RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYDS 368
           +YS+   GYG ET + +I +        +Y+  V  YDM   +YG +A   D+
Sbjct: 38  KYSLAFVGYGPETEEAVIEL--------TYNWGVESYDM-GNAYGHIALSVDN 81

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>LGUL_SALTI (P0A1Q3) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)|
           (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde
           mutase) (S-D-lactoylglutathione methylglyoxal lyase)
          Length = 135

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 210 RYSIVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKYDMVATSYGIVAPGYDS 368
           +YS+   GYG ET + +I +        +Y+  V  YDM   +YG +A   D+
Sbjct: 38  KYSLAFVGYGPETEEAVIEL--------TYNWGVESYDM-GNAYGHIALSVDN 81

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>YR02_CAEEL (Q10015) Hypothetical protein T25E4.2|
          Length = 471

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
 Frame = +3

Query: 159 VAPRYDMVAPRYSVVGPR------YSIVASGYGMETPKYIIAIPGYG--------IVVVS 296
           +AP Y   A   +V G R       +   SGYG    +YI + P Y         I V+ 
Sbjct: 326 MAPEYLAYAVNKNVKGLREKFNRAVAYTKSGYGTVRSRYIASFPSYNSVTSQSQTITVLQ 385

Query: 297 YDMFVPKYDMVATSYGI 347
              F+  Y      YGI
Sbjct: 386 TSHFIQLYKFCFIFYGI 402

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>P200_MYCGE (Q49429) Protein P200|
          Length = 1616

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = +3

Query: 147  SYDFVAPRYDMVAPRY----SVVGPRYSIVASGYGMETPKYII 263
            +YDF  P YD   P Y        P+Y +    Y  + P Y I
Sbjct: 1262 NYDFDEPNYDFDQPSYDSDLQPSEPQYDVDEPNYDFDEPNYEI 1304

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>FMT_BACSK (Q5WFK7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 312

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 219 IVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKY 320
           IV + YG   PK ++  P YG + V +   +PKY
Sbjct: 79  IVTAAYGQIVPKAVLDAPPYGCINV-HASLLPKY 111

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>FMT_THETN (Q8R9T1) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 309

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 219 IVASGYGMETPKYIIAIPGYGIVVVSYDMFVPKY 320
           IV + YG   P+ I+ +P YG + V +   +PKY
Sbjct: 83  IVVAAYGKILPEEILTLPEYGCINV-HASLLPKY 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,576,448
Number of Sequences: 219361
Number of extensions: 1094570
Number of successful extensions: 3742
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result