ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1 precursor, mRNA, complete cds Length = 1079 Score = 377 bits (190), Expect = e-101 Identities = 309/346 (89%), Gaps = 7/346 (2%) Strand = Plus / Minus Query: 19 tgctatatatatttatgaggttacataacacgattggccccacc-aagtgattgtgagct 77 |||||||||||| |||| |||||||||||| |||| ||||||| ||||||||||| ||| Sbjct: 1064 tgctatatatatccatgaagttacataacactattgaccccacccaagtgattgtgggct 1005 Query: 78 acaccgaactcggacaacaaggtcagctccgtcacggaagatggacac--tccacttaca 135 |||| ||||| ||||||| | | |||||| ||| |||||||| | || | |||||||| Sbjct: 1004 acactgaacttggacaaccacataagctccatcaaggaagatgcaaacaattcacttaca 945 Query: 136 aatcatgcatctcctacgactttgttgctcccagatacgacatggttgctcccagataca 195 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 944 aatcattcatctcctacgaccttgttgctcccagatacgacatggttgctcccagataca 885 Query: 196 gtgttgttggtcccagatacagtattgtggcttccggatacgggatggaaactcccaaat 255 |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| || Sbjct: 884 gtgttgttggtcccagatacagtattgtggctcccggatacggtatggaagctcccggat 825 Query: 256 acattattgccattcccggatacggcattgttgttgtcagttacgatatgtttgtcccca 315 ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 824 acattattg----tcccggatacggcattgttattgtcagtcacgatatgtttgtcccca 769 Query: 316 aatacgacatggttgctaccagttacggcattgtcgctcccggtta 361 |||| |||||||||||||||||||||| ||||||| ||||||||| Sbjct: 768 gatacaacatggttgctaccagttacggtattgtcgttcccggtta 723
>emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice recrystallisation inhibition protein Length = 357 Score = 145 bits (73), Expect = 1e-31 Identities = 171/201 (85%), Gaps = 2/201 (0%) Strand = Plus / Minus Query: 151 acgactttgttgctcccagatacgacatggttgctcccagatacagtgttgttggtccca 210 |||||||||||||| |||||||| || ||||||||||||||||| || |||||| |||| Sbjct: 344 acgactttgttgcttccagatacaacgtggttgctcccagatacggtattgttgctcccg 285 Query: 211 gatacagtattgtggcttccggatacgggatggaaactcccaaatacattattgccattc 270 || ||||||||||| | |||||||||| ||| || ||||| |||||||||| | ||| Sbjct: 284 gagacagtattgtgccccccggatacggtatgaaagctcccggatacattattatcgttc 225 Query: 271 ccggatacggcattgttgttgtcagttacgatat-gtttgtccccaaatacgacatggtt 329 ||||||||| |||||||||||| || ||||||| |||||| ||| ||||||||||||| Sbjct: 224 ccggatacgttattgttgttgtctgtaacgatatggtttgt-ccctgatacgacatggtt 166 Query: 330 gctaccagttacggcattgtc 350 ||| || ||||||| |||||| Sbjct: 165 gctgccggttacggtattgtc 145
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3033 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 1838 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1781
>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2 precursor, mRNA, complete cds Length = 1596 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 150 tacgactttgttgctcccagatacgacatggttgctcccagataca 195 |||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 1239 tacgactttgttattcccagatacgacatggtttctcccagataca 1194 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 49 cgattggccccaccaagtgattgtgagctacaccgaactcggacaa 94 ||||||||||||||||| |||||||| |||||| ||||| |||||| Sbjct: 1345 cgattggccccaccaagggattgtgaactacactgaacttggacaa 1300
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 425934 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 425877
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 28098 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 28041
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 1964 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1907
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 1502 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1445
>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full insert sequence Length = 2238 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 54 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtcagctccgtca 111 ||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 649 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 592
>emb|BX072551.7| Zebrafish DNA sequence from clone CH211-117G17 in linkage group 17, complete sequence Length = 164264 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tatgttgctatatatatttat 34 ||||||||||||||||||||| Sbjct: 139840 tatgttgctatatatatttat 139820
>dbj|AK098142.1| Homo sapiens cDNA FLJ40823 fis, clone TRACH2011093 Length = 2364 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 atgttgctatatatatttatgaggt 39 |||||||||||||| |||||||||| Sbjct: 1753 atgttgctatatatgtttatgaggt 1777
>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete sequence Length = 167444 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 atgttgctatatatatttatgaggt 39 |||||||||||||| |||||||||| Sbjct: 101885 atgttgctatatatgtttatgaggt 101861
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11 Length = 344249 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ccgaactcggacaacaaggt 100 |||||||||||||||||||| Sbjct: 180716 ccgaactcggacaacaaggt 180735
>gb|AC154138.11| Mus musculus 10 BAC RP23-124J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179306 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ttcccggatacggcattgtt 287 |||||||||||||||||||| Sbjct: 170133 ttcccggatacggcattgtt 170114
>gb|BT024033.1| Zea mays clone EL01N0423B02 mRNA sequence Length = 2283 Score = 40.1 bits (20), Expect = 4.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 62 caagtgattgtgagctacaccgaactcggacaacaaggtcagctccgt 109 ||||||||||||||| || | ||||| ||||| ||||| |||||||| Sbjct: 775 caagtgattgtgagccacgctgaacttggacaggaaggtgagctccgt 728
>emb|AJ748318.1| Bdellovibrio bacteriovorus fliC5 gene for flagellin Length = 3949 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ccgaactcggacaacaaggt 100 |||||||||||||||||||| Sbjct: 3181 ccgaactcggacaacaaggt 3200
>gb|AC027700.11| Mus musculus chromosome 10, clone RP23-145G7, complete sequence Length = 227454 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 ttcccggatacggcattgtt 287 |||||||||||||||||||| Sbjct: 189825 ttcccggatacggcattgtt 189844
>gb|AC154012.5| Mus musculus 6 BAC RP24-496L23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 116902 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 atggaaactcccaaatacattattgcca 267 ||||||||||||||||| || ||||||| Sbjct: 31901 atggaaactcccaaatagatgattgcca 31928 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,943,958 Number of Sequences: 3902068 Number of extensions: 2943958 Number of successful extensions: 53281 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53213 Number of HSP's gapped (non-prelim): 56 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
