ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ219479.1| wheat putative xylanase inhibitor mRNA, partial cds 291 9e-76
2gb|AY106084.1| Zea mays PCO072275 mRNA sequence 88 3e-14
3ref|NM_190069.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7ref|NM_190071.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
8ref|NM_190067.1| Oryza sativa (japonica cultivar-group), predic... 48 0.023
9dbj|AK073591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 48 0.023
11ref|NM_190072.1| Oryza sativa (japonica cultivar-group), predic... 46 0.091
12dbj|AK105806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
13ref|XM_467622.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.36
14ref|NM_190075.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
16dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
17dbj|AK108977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
18emb|AL845531.3| Mouse DNA sequence from clone RP23-232I4 on chro... 44 0.36
19ref|XM_971313.1| PREDICTED: Tribolium castaneum hypothetical pro... 42 1.4
20emb|AL928702.7| Mouse DNA sequence from clone RP23-292J9 on chro... 42 1.4
21dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.4
22gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.4
23gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.6
24gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.6
25gb|AC149095.2| Pan troglodytes BAC clone CH251-141L12 from Y, co... 40 5.6
26ref|XM_838383.1| Leishmania major strain Friedlin hypothetical p... 40 5.6
27gb|AY370611.1| Rattus norvegicus probasin (Pbsn) gene, promoter ... 40 5.6
28emb|CT005236.2| Pan troglodytes chromosome X clone RP43-010E09 m... 40 5.6
29gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome... 40 5.6
30gb|AC002040.1|HUAC002040 Homo sapiens Chromosome 16 BAC clone CI... 40 5.6
31ref|NM_001008039.1| Xenopus tropicalis tada3l protein (tada3l), ... 40 5.6
32gb|BC080923.1| Xenopus tropicalis tada3l protein, mRNA (cDNA clo... 40 5.6
33emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.6
34dbj|BS000653.1| Pan troglodytes chromosome Y clone:PTB-017B13, c... 40 5.6
35emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in... 40 5.6
36gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
37gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.6
38gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 40 5.6
39gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence 40 5.6
40gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequ... 40 5.6
41gb|AC093913.2| Homo sapiens BAC clone RP11-768G3 from 4, complet... 40 5.6
42gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.6
43emb|BX255961.5| Zebrafish DNA sequence from clone DKEY-261N6 in ... 40 5.6
44gb|AC127459.3| Homo sapiens chromosome 16 clone RP11-20G6, compl... 40 5.6
45gb|AF326277.1|AF326277 Hordeum vulgare ent-kaurenoic acid oxidas... 40 5.6
46gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, r... 40 5.6
47gb|AC008028.3|AC008028 Drosophila melanogaster, chromosome 3R, r... 40 5.6
48gb|AC116499.9| Mus musculus chromosome 8, clone RP24-294M17, com... 40 5.6
49gb|AC117406.2| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC ... 40 5.6
50gb|AF520749.1| Ambystoma maculatum clone AmaD42 microsatellite s... 40 5.6
51gb|AC099740.2| Takifugu rubripes clone 216J3, complete sequence 40 5.6
52gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence 40 5.6
53gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, c... 40 5.6
54emb|AL928723.5| Zebrafish DNA sequence from clone DKEY-252I9 in ... 40 5.6
55dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
56emb|AL161712.5|CEY66D12A Caenorhabditis elegans YAC Y66D12A, com... 40 5.6
57dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
58emb|CR555298.10| Zebrafish DNA sequence from clone CH211-25D12 i... 40 5.6
59gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 10... 40 5.6
60emb|AL928889.14| Mouse DNA sequence from clone RP23-271L22 on ch... 40 5.6
61gb|AC138677.8| Mus musculus chromosome 8, clone RP23-366O14, com... 40 5.6
62emb|CR855318.9| Zebrafish DNA sequence from clone DKEY-239I15 in... 40 5.6
63dbj|AP006732.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.6
64gb|AC026301.3| Caenorhabditis elegans cosmid Y54F10BM, complete ... 40 5.6 
>gb|DQ219479.1| wheat putative xylanase inhibitor mRNA, partial cds
          Length = 347

 Score =  291 bits (147), Expect = 9e-76
 Identities = 241/271 (88%), Gaps = 6/271 (2%)
 Strand = Plus / Minus

                                                                       
Query: 139 tgtggatcactatcccgccctggtaaagttgaagttgctgcaggagaatcccctggccgg 198
           ||||||||||||  | ||| |||| || |||||||||||||||||||| ||| || ||||
Sbjct: 314 tgtggatcactaggcggccttggtgaaattgaagttgctgcaggagaagcccatgcccgg 255

                                                                       
Query: 199 gaggtacggggtgaagctgagcgtcttcttgtcgttgtcgagcaccaccagcttgttctc 258
           ||||| | |||||||||||||||||||||||  |||||| ||||||||||||||||||||
Sbjct: 254 gaggttctgggtgaagctgagcgtcttcttgctgttgtccagcaccaccagcttgttctc 195

                                                                       
Query: 259 catctggaacccgccgatcaccaccgccggcgtcgcg---cccgtgctg---ccagactg 312
           |||||||||||| |||||||| || ||||||||||||   |||||||||   || ||| |
Sbjct: 194 catctggaaccctccgatcacaactgccggcgtcgcgctccccgtgctgcctcccgaccg 135

                                                                       
Query: 313 gacgaacgcgaagcacgccgtgccgctgttcacctgcgccatggagtttccccccaccac 372
           ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 134 gacgaacgcgaagcacgccgtgccgctattcacctgcgccatggagttgccgcccaccac 75

                                          
Query: 373 cgtgaagttcgtcccgccctccagcatcacg 403
           |||  ||||||||||||||||||||||||||
Sbjct: 74  cgtccagttcgtcccgccctccagcatcacg 44
to top
>gb|AY106084.1| Zea mays PCO072275 mRNA sequence
          Length = 1307

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 340  gttcacctgcgccatggagtttccccccaccaccgtgaagttcgtcccgccctccagcat 399
            |||||||||| |||||||||| || || | |||||||||||||  |||||||||||||||
Sbjct: 1003 gttcacctgcaccatggagttgccgccgagcaccgtgaagttctgcccgccctccagcat 944

                                
Query: 400  cacgtccacctgcggcacgg 419
            |||||| | |||||||||||
Sbjct: 943  cacgtcgatctgcggcacgg 924
to top
>ref|NM_190069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1269

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 235  gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccgg 288
            ||||| ||||||||| |||| ||||||||||  |||||||||||||||||||||
Sbjct: 1182 gtcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccgccgg 1129



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 313  gacgaacgcgaagcacgccgtg 334
            ||||||||||||||||||||||
Sbjct: 1098 gacgaacgcgaagcacgccgtg 1077
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                      
Query: 235      gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccgg 288
                ||||| ||||||||| |||| ||||||||||  |||||||||||||||||||||
Sbjct: 41126161 gtcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccgccgg 41126214



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 235      gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
                ||||| ||||||||| |||||||||||||||||||| ||||| | | |||||||||
Sbjct: 41131801 gtcgaacaccaccaggttgttctccatctggaaccctccgatgatcgccgccggcg 41131856



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                            
Query: 342      tcacctgcgccatggagtttccccccaccaccgtgaagttcgtcccgccctccagcatca 401
                ||||||||||||| ||||| || || | ||||||  ||||| | ||||||||||||| ||
Sbjct: 41131917 tcacctgcgccatcgagttgccgccgaacaccgtccagttcttgccgccctccagcacca 41131976

                                  
Query: 402      cgtccacctgcggcacgg 419
                 ||| | |||||||||||
Sbjct: 41131977 ggtcgatctgcggcacgg 41131994



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 235      gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
                ||||| ||||||||| |||| |||||||||   ||||||||| | |||||||||||
Sbjct: 41118987 gtcgaacaccaccaggttgtcctccatctgatgcccgccgatgatcaccgccggcg 41119042



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 252      tgttctccatctggaacccgccgatcaccaccgccggcg 290
                ||||||||||||||||||| ||||  | |||||||||||
Sbjct: 41134602 tgttctccatctggaaccctccgaggatcaccgccggcg 41134640



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 252      tgttctccatctggaacccgccgatcaccaccgccggc 289
                ||||||||| ||| | |||||||| |||||||||||||
Sbjct: 41159981 tgttctccaactgcatcccgccgagcaccaccgccggc 41159944



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 313      gacgaacgcgaagcacgccgtg 334
                ||||||||||||||||||||||
Sbjct: 41126245 gacgaacgcgaagcacgccgtg 41126266



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 313      gacgaacgcgaagcacgccg 332
                ||||||||||||||||||||
Sbjct: 41119062 gacgaacgcgaagcacgccg 41119081
to top
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                   
Query: 235   gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccgg 288
             ||||| ||||||||| |||| ||||||||||  |||||||||||||||||||||
Sbjct: 23216 gtcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccgccgg 23269



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 235   gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
             ||||| ||||||||| |||||||||||||||||||| ||||| | | |||||||||
Sbjct: 28856 gtcgaacaccaccaggttgttctccatctggaaccctccgatgatcgccgccggcg 28911



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                         
Query: 342   tcacctgcgccatggagtttccccccaccaccgtgaagttcgtcccgccctccagcatca 401
             ||||||||||||| ||||| || || | ||||||  ||||| | ||||||||||||| ||
Sbjct: 28972 tcacctgcgccatcgagttgccgccgaacaccgtccagttcttgccgccctccagcacca 29031

                               
Query: 402   cgtccacctgcggcacgg 419
              ||| | |||||||||||
Sbjct: 29032 ggtcgatctgcggcacgg 29049



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 235   gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
             ||||| ||||||||| |||| |||||||||   ||||||||| | |||||||||||
Sbjct: 16042 gtcgaacaccaccaggttgtcctccatctgatgcccgccgatgatcaccgccggcg 16097



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 252   tgttctccatctggaacccgccgatcaccaccgccggcg 290
             ||||||||||||||||||| ||||  | |||||||||||
Sbjct: 31657 tgttctccatctggaaccctccgaggatcaccgccggcg 31695



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 252   tgttctccatctggaacccgccgatcaccaccgccggc 289
             ||||||||| ||| | |||||||| |||||||||||||
Sbjct: 57036 tgttctccaactgcatcccgccgagcaccaccgccggc 56999



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   gacgaacgcgaagcacgccgtg 334
             ||||||||||||||||||||||
Sbjct: 23300 gacgaacgcgaagcacgccgtg 23321



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   gacgaacgcgaagcacgccg 332
             ||||||||||||||||||||
Sbjct: 16117 gacgaacgcgaagcacgccg 16136
to top
>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full
            insert sequence
          Length = 1405

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 235  gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccgg 288
            ||||| ||||||||| |||| ||||||||||  |||||||||||||||||||||
Sbjct: 1103 gtcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccgccgg 1050



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 313  gacgaacgcgaagcacgccgtg 334
            ||||||||||||||||||||||
Sbjct: 1019 gacgaacgcgaagcacgccgtg 998
to top
>ref|NM_190071.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 235  gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||| ||||||||| |||||||||||||||||||| ||||| | | |||||||||
Sbjct: 1188 gtcgaacaccaccaggttgttctccatctggaaccctccgatgatcgccgccggcg 1133



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 342  tcacctgcgccatggagtttccccccaccaccgtgaagttcgtcccgccctccagcatca 401
            ||||||||||||| ||||| || || | ||||||  ||||| | ||||||||||||| ||
Sbjct: 1072 tcacctgcgccatcgagttgccgccgaacaccgtccagttcttgccgccctccagcacca 1013

                              
Query: 402  cgtccacctgcggcacgg 419
             ||| | |||||||||||
Sbjct: 1012 ggtcgatctgcggcacgg 995
to top
>ref|NM_190067.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1305

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 235  gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||| ||||||||| |||| |||||||||   ||||||||| | |||||||||||
Sbjct: 1197 gtcgaacaccaccaggttgtcctccatctgatgcccgccgatgatcaccgccggcg 1142



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  gacgaacgcgaagcacgccg 332
            ||||||||||||||||||||
Sbjct: 1122 gacgaacgcgaagcacgccg 1103
to top
>dbj|AK073591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M04, full
            insert sequence
          Length = 1520

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 235  gtcgagcaccaccagcttgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||| ||||||||| |||| |||||||||   ||||||||| | |||||||||||
Sbjct: 1211 gtcgaacaccaccaggttgtcctccatctgatgcccgccgatgatcaccgccggcg 1156



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  gacgaacgcgaagcacgccg 332
            ||||||||||||||||||||
Sbjct: 1136 gacgaacgcgaagcacgccg 1117
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 282     ccgccggcgtcgcgcccgtgctgc 305
               ||||||||||||||||||||||||
Sbjct: 2251581 ccgccggcgtcgcgcccgtgctgc 2251604
to top
>ref|NM_190072.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1260

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 252  tgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||||||||||||||||| ||||  | |||||||||||
Sbjct: 1162 tgttctccatctggaaccctccgaggatcaccgccggcg 1124
to top
>dbj|AK105806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B07, full
            insert sequence
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 252  tgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||||||||||||||||| ||||  | |||||||||||
Sbjct: 1174 tgttctccatctggaaccctccgaggatcaccgccggcg 1136
to top
>ref|XM_467622.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 519

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 264 ggaacccgccgatcaccaccgccggcgtcgcgcc 297
           |||||||| ||||||||||||||| || ||||||
Sbjct: 82  ggaacccgacgatcaccaccgccgccgccgcgcc 49
to top
>ref|NM_190075.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1332

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 252  tgttctccatctggaacccgccgatcaccaccgccggc 289
            ||||||||| ||| | |||||||| |||||||||||||
Sbjct: 1237 tgttctccaactgcatcccgccgagcaccaccgccggc 1200
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 264      ggaacccgccgatcaccaccgccggcgtcgcgcc 297
                |||||||| ||||||||||||||| || ||||||
Sbjct: 30486238 ggaacccgacgatcaccaccgccgccgccgcgcc 30486205
to top
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0617A09
          Length = 134804

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 264   ggaacccgccgatcaccaccgccggcgtcgcgcc 297
             |||||||| ||||||||||||||| || ||||||
Sbjct: 92286 ggaacccgacgatcaccaccgccgccgccgcgcc 92253
to top
>dbj|AK108977.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-E08, full
            insert sequence
          Length = 1601

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 252  tgttctccatctggaacccgccgatcaccaccgccggc 289
            ||||||||| ||| | |||||||| |||||||||||||
Sbjct: 1309 tgttctccaactgcatcccgccgagcaccaccgccggc 1272
to top
>emb|AL845531.3| Mouse DNA sequence from clone RP23-232I4 on chromosome 2, complete
             sequence
          Length = 120366

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    aatttatttattttattccaac 118
             ||||||||||||||||||||||
Sbjct: 65248 aatttatttattttattccaac 65269
to top
>ref|XM_971313.1| PREDICTED: Tribolium castaneum hypothetical protein LOC662037
           (LOC662037), mRNA
          Length = 747

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 43  tgcaagctgccgaaagtttgg 63
           |||||||||||||||||||||
Sbjct: 569 tgcaagctgccgaaagtttgg 589
to top
>emb|AL928702.7| Mouse DNA sequence from clone RP23-292J9 on chromosome 11 Contains a
            reduced expression 3 (Rex3) pseudogene, complete sequence
          Length = 62980

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   ttccagtgaatttatttattt 109
            |||||||||||||||||||||
Sbjct: 8749 ttccagtgaatttatttattt 8729
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 269     ccgccgatcaccaccgccggc 289
               |||||||||||||||||||||
Sbjct: 2820599 ccgccgatcaccaccgccggc 2820579
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 269     ccgccgatcaccaccgccggc 289
               |||||||||||||||||||||
Sbjct: 2843568 ccgccgatcaccaccgccggc 2843548
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 270     cgccgatcaccaccgccggcgtcg 293
               ||||||||||||||| ||||||||
Sbjct: 2737183 cgccgatcaccaccgtcggcgtcg 2737206
to top
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 275     atcaccaccgccggcgtcgc 294
               ||||||||||||||||||||
Sbjct: 1500169 atcaccaccgccggcgtcgc 1500188
to top
>gb|AC149095.2| Pan troglodytes BAC clone CH251-141L12 from Y, complete sequence
          Length = 170577

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gtgaatttatttattttatt 113
             ||||||||||||||||||||
Sbjct: 85049 gtgaatttatttattttatt 85030
to top
>ref|XM_838383.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1300)
           partial mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 atcaccaccgccggcgtcgc 294
           ||||||||||||||||||||
Sbjct: 93  atcaccaccgccggcgtcgc 74
to top
>gb|AY370611.1| Rattus norvegicus probasin (Pbsn) gene, promoter region and complete
             cds
          Length = 31173

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agtgaatttatttattttat 112
             ||||||||||||||||||||
Sbjct: 12978 agtgaatttatttattttat 12997
to top
>emb|CT005236.2| Pan troglodytes chromosome X clone RP43-010E09 map Xq28, complete
             sequence
          Length = 160755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ccagtgaatttatttatttt 110
             ||||||||||||||||||||
Sbjct: 67604 ccagtgaatttatttatttt 67585
to top
>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete sequence
          Length = 199938

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    atttatttattttattccaa 117
             ||||||||||||||||||||
Sbjct: 42577 atttatttattttattccaa 42596
to top
>gb|AC002040.1|HUAC002040 Homo sapiens Chromosome 16 BAC clone CIT987-SK142A6  complete genomic
             sequence, complete sequence
          Length = 128765

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gtgaatttatttattttatt 113
             ||||||||||||||||||||
Sbjct: 52251 gtgaatttatttattttatt 52270
to top
>ref|NM_001008039.1| Xenopus tropicalis tada3l protein (tada3l), mRNA
          Length = 2270

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   cagtgaatttatttatttta 111
            ||||||||||||||||||||
Sbjct: 2217 cagtgaatttatttatttta 2236
to top
>gb|BC080923.1| Xenopus tropicalis tada3l protein, mRNA (cDNA clone MGC:79575
            IMAGE:6978809), complete cds
          Length = 2270

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   cagtgaatttatttatttta 111
            ||||||||||||||||||||
Sbjct: 2217 cagtgaatttatttatttta 2236
to top
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   tgtcgagcaccaccagcttg 253
             ||||||||||||||||||||
Sbjct: 38106 tgtcgagcaccaccagcttg 38087
to top
>dbj|BS000653.1| Pan troglodytes chromosome Y clone:PTB-017B13, complete sequences
          Length = 157263

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gtgaatttatttattttatt 113
              ||||||||||||||||||||
Sbjct: 121130 gtgaatttatttattttatt 121149
to top
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14,
             complete sequence
          Length = 95848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    atttatttattttattccaa 117
             ||||||||||||||||||||
Sbjct: 18496 atttatttattttattccaa 18515
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 397     catcacgtccacctgcggca 416
               ||||||||||||||||||||
Sbjct: 3739938 catcacgtccacctgcggca 3739919
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 94       gtgaatttatttattttatt 113
                ||||||||||||||||||||
Sbjct: 14683332 gtgaatttatttattttatt 14683313
to top
>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   taaagttgaagttgctgcag 181
             ||||||||||||||||||||
Sbjct: 25351 taaagttgaagttgctgcag 25370
to top
>gb|AC118585.18| Pan troglodytes clone rp43-26n14, complete sequence
          Length = 153334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   taaagttgaagttgctgcag 181
             ||||||||||||||||||||
Sbjct: 13634 taaagttgaagttgctgcag 13615
to top
>gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequence
          Length = 172816

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   taaagttgaagttgctgcag 181
             ||||||||||||||||||||
Sbjct: 90134 taaagttgaagttgctgcag 90115
to top
>gb|AC093913.2| Homo sapiens BAC clone RP11-768G3 from 4, complete sequence
          Length = 192059

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   atttattttattccaacactacaa 125
             |||||||||||||||| |||||||
Sbjct: 64404 atttattttattccaaaactacaa 64381
to top
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     tgaagttgctgcaggagaat 187
               ||||||||||||||||||||
Sbjct: 3443570 tgaagttgctgcaggagaat 3443551
to top
>emb|BX255961.5| Zebrafish DNA sequence from clone DKEY-261N6 in linkage group 9,
             complete sequence
          Length = 176428

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cagtgaatttatttatttta 111
             ||||||||||||||||||||
Sbjct: 60029 cagtgaatttatttatttta 60048
to top
>gb|AC127459.3| Homo sapiens chromosome 16 clone RP11-20G6, complete sequence
          Length = 172331

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gtgaatttatttattttatt 113
             ||||||||||||||||||||
Sbjct: 24158 gtgaatttatttattttatt 24177
to top
>gb|AF326277.1|AF326277 Hordeum vulgare ent-kaurenoic acid oxidase (KAO1) mRNA, complete cds
          Length = 1844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   atttatttattttattccaa 117
            ||||||||||||||||||||
Sbjct: 1700 atttatttattttattccaa 1681
to top
>gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, region 98D-98D, BAC clone
            BACR09F18, complete sequence
          Length = 182525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   aatttatttattttattcca 116
            ||||||||||||||||||||
Sbjct: 3054 aatttatttattttattcca 3035
to top
>gb|AC008028.3|AC008028 Drosophila melanogaster, chromosome 3R, region 98C-98D, BAC clone
              BACR14L13, complete sequence
          Length = 197348

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aatttatttattttattcca 116
              ||||||||||||||||||||
Sbjct: 157754 aatttatttattttattcca 157735
to top
>gb|AC116499.9| Mus musculus chromosome 8, clone RP24-294M17, complete sequence
          Length = 159272

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     atttatttattttattccaa 117
              ||||||||||||||||||||
Sbjct: 131650 atttatttattttattccaa 131631
to top
>gb|AC117406.2| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC Library D) complete
             sequence
          Length = 125360

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ccagtgaatttatttatttt 110
             ||||||||||||||||||||
Sbjct: 48324 ccagtgaatttatttatttt 48343
to top
>gb|AF520749.1| Ambystoma maculatum clone AmaD42 microsatellite sequence
          Length = 649

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  atttgtcatcagtgaatata 26
          ||||||||||||||||||||
Sbjct: 49 atttgtcatcagtgaatata 68
to top
>gb|AC099740.2| Takifugu rubripes clone 216J3, complete sequence
          Length = 64132

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   accagcttgttctccatctg 264
             ||||||||||||||||||||
Sbjct: 46669 accagcttgttctccatctg 46650
to top
>gb|AC098806.3| Takifugu rubripes clone 208D11, complete sequence
          Length = 130460

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   accagcttgttctccatctg 264
             ||||||||||||||||||||
Sbjct: 22363 accagcttgttctccatctg 22344
to top
>gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, complete sequence
          Length = 167570

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 77    ccttaattaatattccagtgaatttatt 104
             ||||||||||||| ||||| ||||||||
Sbjct: 39527 ccttaattaatatcccagttaatttatt 39554
to top
>emb|AL928723.5| Zebrafish DNA sequence from clone DKEY-252I9 in linkage group 17,
              complete sequence
          Length = 211720

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gtgaatttatttattttatt 113
              ||||||||||||||||||||
Sbjct: 125364 gtgaatttatttattttatt 125383
to top
>dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A02, full
           insert sequence
          Length = 1075

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 251 ttgttctccatctggaacccgccgatcaccaccgccggcg 290
           ||||||||||||||||| || ||||| || | ||||||||
Sbjct: 183 ttgttctccatctggaaacctccgatgacaatcgccggcg 222
to top
>emb|AL161712.5|CEY66D12A Caenorhabditis elegans YAC Y66D12A, complete sequence
          Length = 123149

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gtgaatttatttattttatt 113
             ||||||||||||||||||||
Sbjct: 92450 gtgaatttatttattttatt 92469
to top
>dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C06, full
            insert sequence
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 251  ttgttctccatctggaacccgccgatcaccaccgccggcg 290
            ||||||||||||||||| || ||||| || | ||||||||
Sbjct: 1219 ttgttctccatctggaaacctccgatgacaatcgccggcg 1180
to top
>emb|CR555298.10| Zebrafish DNA sequence from clone CH211-25D12 in linkage group 11,
              complete sequence
          Length = 183135

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gtgaatttatttattttatt 113
              ||||||||||||||||||||
Sbjct: 160781 gtgaatttatttattttatt 160800
to top
>gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 103 of 118 of the complete
              sequence
          Length = 239049

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aatttatttattttattcca 116
              ||||||||||||||||||||
Sbjct: 133433 aatttatttattttattcca 133414
to top
>emb|AL928889.14| Mouse DNA sequence from clone RP23-271L22 on chromosome 2, complete
              sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ttatttattttattccaaca 119
              ||||||||||||||||||||
Sbjct: 180225 ttatttattttattccaaca 180206
to top
>gb|AC138677.8| Mus musculus chromosome 8, clone RP23-366O14, complete sequence
          Length = 208995

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   atttatttattttattccaa 117
            ||||||||||||||||||||
Sbjct: 5320 atttatttattttattccaa 5301
to top
>emb|CR855318.9| Zebrafish DNA sequence from clone DKEY-239I15 in linkage group 16,
              complete sequence
          Length = 150812

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     cagtgaatttatttatttta 111
              ||||||||||||||||||||
Sbjct: 101926 cagtgaatttatttatttta 101907
to top
>dbj|AP006732.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02K14, TM0918a,
             complete sequence
          Length = 48600

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aatttatttattttattcca 116
             ||||||||||||||||||||
Sbjct: 39285 aatttatttattttattcca 39304
to top
>gb|AC026301.3| Caenorhabditis elegans cosmid Y54F10BM, complete sequence
          Length = 85397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aatttatttattttattcca 116
             ||||||||||||||||||||
Sbjct: 10121 aatttatttattttattcca 10140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,343,477
Number of Sequences: 3902068
Number of extensions: 6343477
Number of successful extensions: 187092
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 186291
Number of HSP's gapped (non-prelim): 800
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top