ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR838_MIMIV (Q5UQI7) Putative ankyrin repeat protein R838 30 1.4
2YA4G_SCHPO (Q09733) Hypothetical protein C31A2.16 in chromosome I 28 4.0
3MDHP_MEDSA (O48902) Malate dehydrogenase [NADP], chloroplast pre... 28 6.8
4GPMI_THIDA (Q3SGA3) 2,3-bisphosphoglycerate-independent phosphog... 27 8.9
5MDHP_PEA (P21528) Malate dehydrogenase [NADP], chloroplast precu... 27 8.9

>YR838_MIMIV (Q5UQI7) Putative ankyrin repeat protein R838|
          Length = 276

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 290 KTCDCTENLKHAARSSIMHGGH---DPERSIYLPACTSRIQFEGDNKHLAA 147
           K   C +++ + A   I+   H   DPE   Y+  C  +++++GDN  L A
Sbjct: 92  KNFPCGKSMMYGANMIILGKKHKLSDPETYEYIEKCGGKLRYDGDNALLMA 142



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>YA4G_SCHPO (Q09733) Hypothetical protein C31A2.16 in chromosome I|
          Length = 1101

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 225 MASVHDRAACCVFEIFSTVARFERWISCS*GESWRQSCVQ 344
           +AS+H  AA CV+E     +     +    GE+WR+S ++
Sbjct: 100 IASMHKEAAACVYEFLCVES-----VCLHTGENWRESVIE 134



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>MDHP_MEDSA (O48902) Malate dehydrogenase [NADP], chloroplast precursor (EC|
           1.1.1.82) (NADP-MDH)
          Length = 437

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 370 MPQPQLQLICTHD*RHDSPQLQLIQRS----KRATVLKISNTQHAARSCTEAMIPNDL 209
           M   QL   C+    H S QL  + R+       T+  +  TQHA  SC+ A  PN +
Sbjct: 1   MALTQLNNTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVA--PNQV 56



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>GPMI_THIDA (Q3SGA3) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 513

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 241 IELRAACLRFSVQSHVLSAGSVAVEASHGVSHVCRXXXXXXXXWSHSNNLLP 396
           IE    CL   V++ +   G V + A HG + +           +H+ NL+P
Sbjct: 417 IETVDTCLGRVVEAQLARGGEVLITADHGNAELMLDAETGQAHTAHTMNLVP 468



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>MDHP_PEA (P21528) Malate dehydrogenase [NADP], chloroplast precursor (EC|
           1.1.1.82) (NADP-MDH)
          Length = 441

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = -3

Query: 370 MPQPQLQLICTHD*RHDSPQLQLIQRSKRATVLK--------ISNTQHAARSCTEAMIPN 215
           M   QL   C+    H S QL  + R++  T+ +        +  TQHA  SC+ A  PN
Sbjct: 1   MALTQLNSTCSKPQLHSSSQLSFLSRTRTRTLPRHYHSTFAPLHRTQHARISCSVA--PN 58

Query: 214 DL 209
            +
Sbjct: 59  QV 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,717,678
Number of Sequences: 219361
Number of extensions: 865011
Number of successful extensions: 1586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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