ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29g11 |
|---|---|
| Clone Library Name | barley_pub |
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 35.4 bits (80), Expect = 0.056 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -2 Query: 426 DFGWGKPVAARSGLANKF-DGKTSLYPGREGGGSIDAELTLSPENMAALER 277 DFGWG P G++N F DG+ L P R+G GS+ + L +++ ++ Sbjct: 392 DFGWGSPTFF--GISNIFYDGQCFLIPSRDGDGSMTLAINLFSSHLSRFKK 440
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 33.1 bits (74), Expect = 0.28 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 426 DFGWGKPVAARSGLANKF-DGKTSLYPGREGGGSIDAELTLSPENMAALER 277 DFGWG P G++N F DG+ L P + G GS+ + L +++ ++ Sbjct: 392 DFGWGNPTF--FGISNIFYDGQCFLIPSQNGDGSMTLAINLFSSHLSLFKK 440
>VGLM_BHV1C (P52370) Glycoprotein M| Length = 411 Score = 33.1 bits (74), Expect = 0.28 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 401 RRAAAWPTSSTARRRCTPAGRAAAALTPSSRCRPRTWRR 285 R AAAWP S +RRC A P +R PR R+ Sbjct: 370 RTAAAWPRSKATQRRCWTAASPLTTRRPCTRRTPRPARQ 408
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 33.1 bits (74), Expect = 0.28 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 426 DFGWGKPVAARSGLANKF-DGKTSLYPGREGGGSIDAELTLSPENMAALER 277 DFGWG P G++N F DG+ L P + G GS+ + L +++ ++ Sbjct: 393 DFGWGSPTF--FGISNIFYDGQCFLIPSQNGDGSMTLAINLFSSHLSLFKK 441
>Y547_METJA (Q57967) Hypothetical ATP-binding protein MJ0547| Length = 264 Score = 32.3 bits (72), Expect = 0.48 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = -2 Query: 414 GKPVAARSGLANKFDGKTSLYPGREGGGSIDAELTLSPENMAALERDEEFWAAV 253 GKPV LA K D K ++Y G EG I A ++L A E+ EE A+ Sbjct: 58 GKPVTLNDVLAGKADIKDAIYEGPEGVLVIPAGVSLEKFRRAKPEKLEEVLKAI 111
>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 618 Score = 31.6 bits (70), Expect = 0.81 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = -3 Query: 413 GSPW----RRAAAWPTSSTARRRCTPAGRAAAALTPSSRCRPRTWRRWSATRSFGPPSRP 246 G PW +RA AW + R RC P A + CRPR SA GP RP Sbjct: 155 GGPWARDIQRAGAWELRFSYRARCEPPAVGTAC---TRLCRPR-----SAPSRCGPGLRP 206
>FADL_SALTY (Q8ZNA5) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 437 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 423 FGWGKPVAARSGLANKFDGKTSLYPGREGGGSIDAELTLSPENMAALERDEEFWA 259 FGWG + + GLA +F+ Y G GG+ D E T++ N++ R E W+ Sbjct: 119 FGWGASITSNYGLATEFN---DTYAGGSVGGTTDLE-TMN-LNLSGAYRLNEAWS 168
>FADL_SALTI (Q8Z4Y8) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 437 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 423 FGWGKPVAARSGLANKFDGKTSLYPGREGGGSIDAELTLSPENMAALERDEEFWA 259 FGWG + + GLA +F+ Y G GG+ D E T++ N++ R E W+ Sbjct: 119 FGWGASITSNYGLATEFN---DTYAGGSVGGTTDLE-TMN-LNLSGAYRLNEAWS 168
>TF3B_HUMAN (Q92994) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2) Length = 677 Score = 30.0 bits (66), Expect = 2.4 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Frame = -3 Query: 425 TSGGGSPWRRAAAWPTSSTAR---RRCTPAGRAAA--ALTPSSRCRPRTWRRWSATRSFG 261 ++GGGSP R A S++AR RR TPA R+ A + R RP + + + G Sbjct: 548 SAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPAKKVATG 607 Query: 260 P---PSRPTRG 237 PS PT G Sbjct: 608 EALLPSSPTLG 618
>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 423 FGWGKPVAARSGLANKFDGKTSLYPGREGGGSIDAE 316 FGWG + + GLA +F+ Y G GG+ D E Sbjct: 119 FGWGASITSNYGLATEFN---DTYAGGSVGGTTDLE 151
>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 423 FGWGKPVAARSGLANKFDGKTSLYPGREGGGSIDAE 316 FGWG + + GLA +F+ Y G GG+ D E Sbjct: 119 FGWGASITSNYGLATEFN---DTYAGGSVGGTTDLE 151
>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 423 FGWGKPVAARSGLANKFDGKTSLYPGREGGGSIDAE 316 FGWG + + GLA +F+ Y G GG+ D E Sbjct: 119 FGWGASITSNYGLATEFN---DTYAGGSVGGTTDLE 151
>MATK_PRUDU (Q8WJP3) Maturase K (Intron maturase)| Length = 506 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = +1 Query: 10 SIILFYFGYQNQSNQSKLVVMRLTEIEEPRNLHLVSSNESQIKRKI 147 SI+L GY N+S S L++ RL +N +S+N+S K+K+ Sbjct: 40 SILLDNVGYDNKS--SLLIIKRLISRMYKQNHFFISANDSNQKKKL 83
>DYH1B_CHLRE (Q9MBF8) Dynein-1-beta heavy chain, flagellar inner arm I1 complex| (1-beta DHC) (Dynein-1, subspecies f) Length = 4513 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 4 KWSIILFYFGYQNQSNQSKLVVMRLTE 84 K + +FY+GY+ Q N +LV+ LT+ Sbjct: 1799 KQVLSVFYYGYEYQGNNGRLVITPLTD 1825
>ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) (ARM-1) Length = 407 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -3 Query: 425 TSGGGSPWRRAAAWPTSSTARRRCTPAGRAAAALTPSS 312 +S S + AA P+SST+ R TPA A AA + +S Sbjct: 204 SSSSSSRSQSAAVTPSSSTSSARATPAPSAPAAASATS 241
>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3| (SPA-1-like protein 3) Length = 1781 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -3 Query: 425 TSGGGSPWRRAAAWPTSSTARRRCTPAGRAAAALTP 318 T GG P+R A W S A PA + A TP Sbjct: 1069 TPGGRPPYRSNAPWQWSGPASHNSLPASKWATPTTP 1104
>MIS_MOUSE (P27106) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 555 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +1 Query: 328 AAAALPAGVQRRLAVELVGQAAARRH--GLPP 417 A+A AG+QRR+AVEL A+ R GLPP Sbjct: 364 ASAPWAAGLQRRVAVELQAAASELRDLPGLPP 395
>DLL3_RAT (O88671) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 589 Score = 28.9 bits (63), Expect = 5.3 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = -3 Query: 413 GSPW----RRAAAWPTSSTARRRCTPAGRAAAALTPSSRCRPRTWRRWSATRSFGPPSRP 246 G+PW +R AW + R RC P AA + CR R SA GP RP Sbjct: 153 GAPWARDVQRTGAWELHFSYRARCEPPAVGAAC---ARLCRSR-----SAPSRCGPGLRP 204
>TBA_MYCGR (O94128) Tubulin alpha chain| Length = 450 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = -2 Query: 399 ARSGLANKFD---GKTSLYPGREGGGSIDAELTLSPENMAALERDEEFWAA 256 A S L++KFD K + G G + E + + E++AALERD E AA Sbjct: 387 AWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVAA 437
>TBA2_NEUCR (P38669) Tubulin alpha-B chain| Length = 449 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = -2 Query: 399 ARSGLANKFD---GKTSLYPGREGGGSIDAELTLSPENMAALERDEEFWAA 256 A S L++KFD K + G G + E + + E++AALERD E AA Sbjct: 387 AWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVAA 437
>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)| Length = 662 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = -3 Query: 425 TSGGGSPWRRAAAWPTSSTARRRCTPAGRA---AAALTPSSRCRPRTWRRWSATRSFGPP 255 T+ G +P AA PT++ A T G+A AAA P++ +AT S Sbjct: 77 TAAGKAPTTAAATAPTTAAAGAPTTATGKAPATAAAPVPTTAASKAPTTAAAATHSTAAA 136 Query: 254 SRPT 243 + PT Sbjct: 137 AAPT 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,983,188 Number of Sequences: 219361 Number of extensions: 983354 Number of successful extensions: 3668 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3664 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
