ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 37 0.024
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 35 0.090
3DDX1_DROME (Q9VNV3) ATP-dependent RNA helicase Ddx1 (EC 3.6.1.-)... 30 3.8
4GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC... 30 3.8
5GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.... 30 3.8

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 508 AATPLLAAWAERFRALHGVKEVMP-DPQRLLEY 413
           A TP LAAW ERFRA    K V+P D  +LLE+
Sbjct: 191 ARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 508 AATPLLAAWAERFRALHGVKEVMPDPQRLLEY 413
           +ATPLL  W++RF A    K V+PD ++++++
Sbjct: 190 SATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>DDX1_DROME (Q9VNV3) ATP-dependent RNA helicase Ddx1 (EC 3.6.1.-) (DEAD box|
           protein 1)
          Length = 727

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 62  QTQHMMLSISVPRMLQQRISTRTPLGTNGIH---*ITPVHH*GQTVFTKLRMLR*RKCI 229
           +T H ++ +  P+M     S R P+GT+G+H    + P +H  +T+   +++L+   C+
Sbjct: 439 ETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCV 497



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>GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC 2.5.1.18)|
           (Auxin-regulated protein parC)
          Length = 221

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 508 AATPLLAAWAERFRALHGVKEVMPDPQRLLEYNLMRRARLGL 383
           A  P   AWA+R      V + +PD  ++LE+  + R + GL
Sbjct: 179 AECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGL 220



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>GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.1.18)|
           (Auxin-induced protein PCNT107)
          Length = 221

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 508 AATPLLAAWAERFRALHGVKEVMPDPQRLLEYNLMRRARLGL 383
           A  P   AWA+R      V + +PD  ++LE+  + R + GL
Sbjct: 179 AECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGL 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,783,310
Number of Sequences: 219361
Number of extensions: 1133458
Number of successful extensions: 2622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2619
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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