ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF244702.1|AF244702 Zea mays glutathione S-transferase GST 37 mRNA, complete cds Length = 1074 Score = 71.9 bits (36), Expect = 2e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 380 cggcagcccgaggcgagctcgcctcatgaggttgtactccaacagcctctgcggatccgg 439 ||||||||| | ||||||||||| || ||| ||||||| |||||||||| || || Sbjct: 728 cggcagcccacgacgagctcgcctaatcttgttatactccagcagcctctgcacgtcagg 669 Query: 440 catcacctccttgacgccgtggagcgcgcgaaaccgctcggcccaggccgccagcagcgg 499 ||||||||| ||||||||| ||||||| ||||| || ||||| |||||||||||||| Sbjct: 668 tatcacctccctgacgccgtcgagcgcggcgaaccggtccgcccacgccgccagcagcgg 609 Query: 500 cgtc 503 |||| Sbjct: 608 cgtc 605
>gb|AF244687.1|AF244687 Zea mays glutathione S-transferase GST 22 mRNA, partial cds Length = 803 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| ||||| |||||||||||||||||| Sbjct: 593 agcgcgcagaaccgctccgcccacgccgccagcagcggcgtc 552
>gb|AY104131.1| Zea mays PCO099552 mRNA sequence Length = 831 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| ||||| |||||||||||||||||| Sbjct: 631 agcgcgcagaaccgctccgcccacgccgccagcagcggcgtc 590
>ref|NM_196067.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0089F16.14), mRNA Length = 747 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 471 aaccgctcggcccaggccgccagcagcggcgtc 503 |||||||| ||||| |||||||||||||||||| Sbjct: 638 aaccgctccgcccacgccgccagcagcggcgtc 606
>gb|BT009283.1| Triticum aestivum clone wlm0.pk0005.d9:fis, full insert mRNA sequence Length = 999 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Minus Query: 435 tccggcatcacctccttgacgccgtggagcgcgcgaaaccgctcggcccaggccgccagc 494 ||||| || ||||||||| || ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 634 tccgggatgacctccttggcggcgtcgagcgcggcaaagcgctccgcccaggccgccagc 575 Query: 495 a 495 | Sbjct: 574 a 574
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 471 aaccgctcggcccaggccgccagcagcggcgtc 503 |||||||| ||||| |||||||||||||||||| Sbjct: 41781 aaccgctccgcccacgccgccagcagcggcgtc 41749
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 471 aaccgctcggcccaggccgccagcagcggcgtc 503 |||||||| ||||| |||||||||||||||||| Sbjct: 10883671 aaccgctccgcccacgccgccagcagcggcgtc 10883639 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 20091694 cgctccgcccaggccgccagaagcggcgtc 20091665 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 20032793 cgctcggcccacgccgccagcagcgg 20032768 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 19979618 cgctcggcccacgccgccagcagcgg 19979593
>dbj|AK106938.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C12, full insert sequence Length = 1000 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 471 aaccgctcggcccaggccgccagcagcggcgtc 503 |||||||| ||||| |||||||||||||||||| Sbjct: 100 aaccgctccgcccacgccgccagcagcggcgtc 132
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 471 aaccgctcggcccaggccgccagcagcggcgtc 503 |||||||| ||||| |||||||||||||||||| Sbjct: 10889711 aaccgctccgcccacgccgccagcagcggcgtc 10889679 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 20102970 cgctccgcccaggccgccagaagcggcgtc 20102941 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 20044069 cgctcggcccacgccgccagcagcgg 20044044 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 19990894 cgctcggcccacgccgccagcagcgg 19990869
>ref|NM_197493.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.27), mRNA Length = 708 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 596 cgctccgcccaggccgccagaagcggcgtc 567
>ref|NM_197473.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.25), mRNA Length = 699 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 596 cgctcggcccacgccgccagcagcgg 571
>ref|NM_197462.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.9), mRNA Length = 758 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 652 cgctcggcccacgccgccagcagcgg 627
>ref|NM_193483.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 44.1 bits (22), Expect = 0.44 Identities = 37/42 (88%) Strand = Plus / Minus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 653 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 612
>gb|AF402799.1| Oryza sativa (japonica cultivar-group) clone RICS11381A putative glutathione S-transferase OsGSTU12 mRNA, complete cds Length = 981 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 687 cgctcggcccacgccgccagcagcgg 662
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 128572 cgctcggcccacgccgccagcagcgg 128597 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 75397 cgctcggcccacgccgccagcagcgg 75422 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 16496 cgctccgcccaggccgccagaagcggcgtc 16525
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 74797 cgctccgcccaggccgccagaagcggcgtc 74826
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.44 Identities = 37/42 (88%) Strand = Plus / Plus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 21111148 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 21111189
>ref|NM_019185.1| Rattus norvegicus GATA binding protein 6 (Gata6), mRNA Length = 1844 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 358 gctgcggcggccgcggcgtcagcggcagcc 387 |||||||||||||||||| | ||||||||| Sbjct: 201 gctgcggcggccgcggcggccgcggcagcc 230
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 6425 cgctcggcccacgccgccagcagcgg 6450
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 44.1 bits (22), Expect = 0.44 Identities = 37/42 (88%) Strand = Plus / Plus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 78693 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 78734
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 44.1 bits (22), Expect = 0.44 Identities = 37/42 (88%) Strand = Plus / Plus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 8657 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 8698
>dbj|AK111021.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G10, full insert sequence Length = 975 Score = 44.1 bits (22), Expect = 0.44 Identities = 37/42 (88%) Strand = Plus / Minus Query: 462 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 503 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 694 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 653
>dbj|AK108376.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E01, full insert sequence Length = 1066 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 672 cgctcggcccacgccgccagcagcgg 647
>dbj|AK107032.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B04, full insert sequence Length = 1159 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcggcgtc 503 ||||| |||||||||||||| ||||||||| Sbjct: 691 cgctccgcccaggccgccagaagcggcgtc 662
>dbj|AK063773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C09, full insert sequence Length = 987 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 474 cgctcggcccaggccgccagcagcgg 499 ||||||||||| |||||||||||||| Sbjct: 683 cgctcggcccacgccgccagcagcgg 658
>gb|L22760.1|RATGATGT1X Rat DNA binding protein (GATA-GT1) mRNA, complete cds Length = 1844 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 358 gctgcggcggccgcggcgtcagcggcagcc 387 |||||||||||||||||| | ||||||||| Sbjct: 201 gctgcggcggccgcggcggccgcggcagcc 230
>gb|AC008556.5| Homo sapiens chromosome 19 clone CTC-526N19, complete sequence Length = 142515 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 tatttatatagagagatttatatct 354 ||||||||||||||||| ||||||| Sbjct: 80026 tatttatatagagagatatatatct 80050
>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence Length = 174578 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 tatttatatagagagatttat 350 ||||||||||||||||||||| Sbjct: 101653 tatttatatagagagatttat 101633
>gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complete sequence Length = 217921 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aaaaataactgccttttcttt 21 ||||||||||||||||||||| Sbjct: 161561 aaaaataactgccttttcttt 161581
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 cgcggcgtcagcggcagcccg 389 ||||||||||||||||||||| Sbjct: 75369 cgcggcgtcagcggcagcccg 75389
>gb|AC119967.11| Mus musculus chromosome 10, clone RP24-473K14, complete sequence Length = 196661 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aatatcagtgccaaggatgtt 105 ||||||||||||||||||||| Sbjct: 130576 aatatcagtgccaaggatgtt 130556
>ref|XM_471598.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2241 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgctgcggcggccgcggcgt 376 |||||||||||||||||||| Sbjct: 65 tgctgcggcggccgcggcgt 46
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cggccgcggcgtcagcggca 384 |||||||||||||||||||| Sbjct: 102087 cggccgcggcgtcagcggca 102106
>gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226276 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 ttatttatatagagagatttatat 352 |||| ||||||||||||||||||| Sbjct: 189705 ttatatatatagagagatttatat 189728
>ref|XM_988556.1| PREDICTED: Mus musculus hypothetical protein LOC667134 (LOC667134), mRNA Length = 453 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 gcggcggccgcggcgtcagcggcagccc 388 |||||||| |||||| |||||||||||| Sbjct: 326 gcggcggcggcggcggcagcggcagccc 353
>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence Length = 190427 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ccttttctttgatagagcac 31 |||||||||||||||||||| Sbjct: 116469 ccttttctttgatagagcac 116450
>gb|AC099558.2| Homo sapiens chromosome 3 clone RP11-680P23, complete sequence Length = 180049 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atttatatagagagatttat 350 |||||||||||||||||||| Sbjct: 128015 atttatatagagagatttat 127996
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cggccgcggcgtcagcggca 384 |||||||||||||||||||| Sbjct: 102097 cggccgcggcgtcagcggca 102116
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cggccgcggcgtcagcggca 384 |||||||||||||||||||| Sbjct: 102132 cggccgcggcgtcagcggca 102151
>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03, complete sequence Length = 144146 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgctgcggcggccgcggcgt 376 |||||||||||||||||||| Sbjct: 2777 tgctgcggcggccgcggcgt 2758
>gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, complete sequence Length = 182522 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 359 ctgcggcggccgcggcgtcagcggcagc 386 ||||||||||||||||| | |||||||| Sbjct: 29792 ctgcggcggccgcggcggcggcggcagc 29765
>gb|AC090888.4| Homo sapiens chromosome 15 clone CTD-2014N11 map 15q21.1, complete sequence Length = 140589 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttatatagagagatttatatctat 356 |||||||||||||| ||||||||| Sbjct: 63147 ttatatagagagatatatatctat 63170
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gcggccgcggcgtcagcggc 383 |||||||||||||||||||| Sbjct: 67689 gcggccgcggcgtcagcggc 67670
>gb|AC147364.7| Medicago truncatula clone mth2-68g24, complete sequence Length = 109540 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tgatcctagccttatttata 337 |||||||||||||||||||| Sbjct: 44557 tgatcctagccttatttata 44576
>dbj|AK075118.1| Homo sapiens cDNA FLJ90637 fis, clone PLACE1003772, weakly similar to EXTENSIN PRECURSOR Length = 2273 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 361 gcggcggccgcggcgtcagcggcagcccgagg 392 |||||||| |||||| ||||||||||| |||| Sbjct: 742 gcggcggcggcggcggcagcggcagccagagg 711
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence Length = 206537 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atttatatagagagatttat 350 |||||||||||||||||||| Sbjct: 196179 atttatatagagagatttat 196198
>gb|AC096948.2| Homo sapiens chromosome 1 clone RP4-809J13, complete sequence Length = 115596 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 gcggcggccgcggcgtcagcggcagcccgagg 392 |||||||| |||||| ||||||||||| |||| Sbjct: 23359 gcggcggcggcggcggcagcggcagccagagg 23390
>gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence Length = 181312 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 ttatatagagagatttatatctat 356 |||||||||||||| ||||||||| Sbjct: 11702 ttatatagagagatatatatctat 11725
>gb|AC021488.5| Homo sapiens chromosome 11, clone RP11-77F24, complete sequence Length = 138522 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ccttttctttgatagagcac 31 |||||||||||||||||||| Sbjct: 43022 ccttttctttgatagagcac 43003
>gb|AF391285.1|AF391285 Homo sapiens 11p15.5 clone LOH11A, partial sequence Length = 160199 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 359 ctgcggcggccgcggcgtcagcggcagc 386 ||||||||||||||||| | |||||||| Sbjct: 40263 ctgcggcggccgcggcggcggcggcagc 40236
>ref|NM_001039463.1| Homo sapiens chromosome 1 open reading frame 118 (C1orf118), mRNA Length = 2273 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 361 gcggcggccgcggcgtcagcggcagcccgagg 392 |||||||| |||||| ||||||||||| |||| Sbjct: 742 gcggcggcggcggcggcagcggcagccagagg 711
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgctgcggcggccgcggcgt 376 |||||||||||||||||||| Sbjct: 12591448 tgctgcggcggccgcggcgt 12591467
>dbj|AB012807.2| Mus musculus Ugcg gene for UDP-glucose ceramide glucosyltransferase, complete cds Length = 3117 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 gcggcggccgcggcgtcagcggcagccc 388 |||||||| |||||| |||||||||||| Sbjct: 397 gcggcggcggcggcggcagcggcagccc 424
>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence Length = 172415 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 caaggatgttacagcagaga 115 |||||||||||||||||||| Sbjct: 73508 caaggatgttacagcagaga 73489
>gb|AC138392.2| Homo sapiens chromosome 1 clone RP11-181C21, complete sequence Length = 161502 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 gcggcggccgcggcgtcagcggcagcccgagg 392 |||||||| |||||| ||||||||||| |||| Sbjct: 109953 gcggcggcggcggcggcagcggcagccagagg 109984
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 cggcccaggccgccagcagc 497 |||||||||||||||||||| Sbjct: 771355 cggcccaggccgccagcagc 771336
>dbj|AK062593.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H04, full insert sequence Length = 2405 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgctgcggcggccgcggcgt 376 |||||||||||||||||||| Sbjct: 105 tgctgcggcggccgcggcgt 86
>emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chromosome 4, complete sequence Length = 236158 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 gcggcggccgcggcgtcagcggcagccc 388 |||||||| |||||| |||||||||||| Sbjct: 73613 gcggcggcggcggcggcagcggcagccc 73640
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ttgacgccgtggagcgcgcg 469 |||||||||||||||||||| Sbjct: 3258892 ttgacgccgtggagcgcgcg 3258873
>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05, complete sequence Length = 129908 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgctgcggcggccgcggcgt 376 |||||||||||||||||||| Sbjct: 6434 tgctgcggcggccgcggcgt 6453
>dbj|AP005597.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-72M10, complete sequence Length = 163324 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ccttttctttgatagagcac 31 |||||||||||||||||||| Sbjct: 18709 ccttttctttgatagagcac 18690 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,785,038 Number of Sequences: 3902068 Number of extensions: 3785038 Number of successful extensions: 82932 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81892 Number of HSP's gapped (non-prelim): 1038 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
