Clone Information

BLAST Search Result

Clone Name	rbart29g06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	32	0.49
2	CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor	30	1.1
3	MYB1_MAIZE (P20024) Myb-related protein Zm1	30	1.4
4	EPHA7_RAT (P54759) Ephrin type-A receptor 7 precursor (EC 2.7.10...	30	1.4
5	EPHA7_MOUSE (Q61772) Ephrin type-A receptor 7 precursor (EC 2.7....	30	1.4
6	PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)	30	1.4
7	PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1) ...	30	1.9
8	PHLPL_HUMAN (Q6ZVD8) PH domain leucine-rich repeat protein phosp...	29	2.4
9	TAAR6_RAT (Q923Y5) Trace amine-associated receptor 6 (Trace amin...	29	2.4
10	TAAR6_MOUSE (Q5QD13) Trace amine-associated receptor 6	29	2.4
11	BCL3_HUMAN (P20749) B-cell lymphoma 3-encoded protein (Protein B...	29	2.4
12	BCAR1_MOUSE (Q61140) Breast cancer anti-estrogen resistance prot...	29	2.4
13	NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleop...	29	2.4
14	PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like prot...	29	3.2
15	EPHA7_HUMAN (Q15375) Ephrin type-A receptor 7 precursor (EC 2.7....	29	3.2
16	ZN592_HUMAN (Q92610) Zinc finger protein 592	29	3.2
17	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	29	3.2
18	RAVR1_RAT (Q5XI28) Protein raver-1	28	4.2
19	BD02_MOUSE (P82020) Beta-defensin 2 precursor (Defensin, beta 2)...	28	4.2
20	CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor	28	4.2
21	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	28	4.2
22	CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor	28	4.2
23	PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)	28	4.2
24	CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor	28	4.2
25	BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance prot...	28	4.2
26	PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7...	28	4.2
27	NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytopl...	28	4.2
28	DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein du...	28	4.2
29	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	28	5.4
30	NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleopor...	28	5.4
31	CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragm...	28	5.4
32	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	28	5.4
33	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	28	5.4
34	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	28	5.4
35	BUR2_CANGA (Q6FX19) Protein BUR2	28	5.4
36	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	28	5.4
37	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	28	5.4
38	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	5.4
39	BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor	28	5.4
40	CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor	28	5.4
41	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	28	5.4
42	Y929_HAEIN (P44940) Hypothetical protein HI0929	28	7.1
43	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	28	7.1
44	RS17_METTH (O26120) 30S ribosomal protein S17P	28	7.1
45	CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor	28	7.1
46	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	28	7.1
47	EIL2_ARATH (O23115) ETHYLENE-INSENSITIVE3-like 2 protein	28	7.1
48	KFMS_FSVMD (P00545) Tyrosine-protein kinase transforming protein...	28	7.1
49	FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)	28	7.1
50	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	28	7.1
51	TMM24_MOUSE (Q80X80) Transmembrane protein 24	28	7.1
52	SECA_TREPA (O83394) Preprotein translocase secA subunit	28	7.1
53	PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein R...	27	9.3
54	CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor	27	9.3
55	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	27	9.3
56	AT11A_MOUSE (P98197) Probable phospholipid-transporting ATPase I...	27	9.3
57	STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Pro...	27	9.3
58	C1QB_HUMAN (P02746) Complement C1q subcomponent subunit B precursor	27	9.3
59	SNRK_HUMAN (Q9NRH2) SNF-related serine/threonine-protein kinase ...	27	9.3
60	EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosin...	27	9.3
61	HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)	27	9.3
62	CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor	27	9.3
63	MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D	27	9.3

>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P GP   G + RP QG PP G  +  PP
Sbjct: 172 PRPPQGPPTTGPQPRPTQGPPPTGGPQQQPP 202



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 105 PQGPPPPG--GPQQRPPQGPPPPGGPQPRPP 133



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 77  PQGPPPPG--GPQPRPPQGPPPPGGPQPRPP 105



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 63  PQGPPPPG--GPQPRPPQGPPPPGGPQPRPP 91

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>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 347 GGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVV---SSDRYVSCLSPPLVPTP 198
           GG G   P G     G    P  PGP GH GV+   ++D     + PP  P P
Sbjct: 133 GGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGP 185

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>MYB1_MAIZE (P20024) Myb-related protein Zm1|
          Length = 340

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 205 GTRGGDRHDTYRSDETTPKCPSGPGHLGLRARPLQGHPPLGEHRPCPPASS 357
           G+  GD+  T R  + T  C   P  + +    + G PP  +  P P +SS
Sbjct: 156 GSDSGDQCGTSREPDATDVCTLQPEDMDVSDMLVDGAPPAAQPMPSPSSSS 206

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>EPHA7_RAT (P54759) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3)
          Length = 998

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 314 CPC---SGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVP 204
           CP    S R  S RC   DG+    S   YV+C  PP  P
Sbjct: 296 CPTHSFSDREGSSRCECEDGYYRAPSDPPYVACTRPPSAP 335

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>EPHA7_MOUSE (Q61772) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3) (Embryonic brain kinase) (EBK) (Developmental
           kinase 1) (MDK-1)
          Length = 998

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 314 CPC---SGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVP 204
           CP    S R  S RC   DG+    S   YV+C  PP  P
Sbjct: 296 CPTHSFSDREGSSRCECEDGYYRAPSDPPYVACTRPPSAP 335

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>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)|
          Length = 567

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 303 RTSPQPQMPRPRWTFRRRLV*SIRVMSVPPPCPNPIQSFQ 184
           R  P+PQ  R R   +R L       SV PP P+P QS+Q
Sbjct: 394 RNQPEPQEQRERAHLQRALQ-----ASVSPPSPSPNQSYQ 428

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>PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
 Frame = +1

Query: 265 PSGPGHLGLRARPLQG-------HPPLGEHRPCPPASSLI 363
           PS P   G  ARP Q        HPP   H PCPP  +++
Sbjct: 176 PSQPSTGGSFARPHQSEDWYPTLHPPPTGHLPCPPPPTML 215

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>PHLPL_HUMAN (Q6ZVD8) PH domain leucine-rich repeat protein phosphatase-like (EC|
           3.1.3.16)
          Length = 1323

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 148 IGCTLCFCAPTALWCLRLDRLIF--IYHVMMSRTESFGWSEHINVLS*KC 5
           +GC + F         RLDR++   IY+V   +T+   W+E + VL   C
Sbjct: 131 LGCMIRFYGEKPCHMDRLDRILLSGIYNVRKGKTQLHKWAERLVVLCGTC 180

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>TAAR6_RAT (Q923Y5) Trace amine-associated receptor 6 (Trace amine receptor 4)|
           (TaR-4)
          Length = 345

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 263 HLGVVSSDRYVSCLSPPLVPTPFRVS 186
           HL  +S DRY++   P + PT F VS
Sbjct: 122 HLSFISIDRYIAVTDPLVYPTKFTVS 147

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>TAAR6_MOUSE (Q5QD13) Trace amine-associated receptor 6|
          Length = 345

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 263 HLGVVSSDRYVSCLSPPLVPTPFRVS 186
           HL  +S DRY++   P + PT F VS
Sbjct: 122 HLSFISIDRYIAVTDPLVYPTKFTVS 147

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>BCL3_HUMAN (P20749) B-cell lymphoma 3-encoded protein (Protein Bcl-3)|
          Length = 446

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 339 GAMLPQRRMPLQRTSPQPQMPR 274
           GA LP R+ PL+  SP+P  PR
Sbjct: 19  GAALPLRKRPLRAPSPEPAAPR 40

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>BCAR1_MOUSE (Q61140) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 874

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 259 KCPSGPGHLGLRARPLQGHP--PLGEHRPCPPAS 354
           K P+GPG  G  A P Q  P  P G H P PPAS
Sbjct: 69  KKPAGPGP-GPPATPPQPQPSLPQGVHAPVPPAS 101

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>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 151 WQPF*NNSLVFLETLNGVGTRGGDRHDTYRSDETTPKCPSGPGHLGLR 294
           WQ +  N +VFL    GV  +     +   +  T+P CPS P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGVRNQSPAEAEKPAAS-TSPSCPSLPPHLPTR 60

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>PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like protein|
           (Modulator of Na,K-ATPase) (MONaKA)
          Length = 578

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 250 TTPKCPSGPGHLGLRARPLQGHPPLGEHRPCPPASS 357
           T+P  P+ P   G+ A P    PP     P PPAS+
Sbjct: 498 TSPSSPTPPSTSGISALPPPPPPPPPPAAPLPPAST 533

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>EPHA7_HUMAN (Q15375) Ephrin type-A receptor 7 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor EHK-3) (EPH homology
           kinase 3) (Receptor protein-tyrosine kinase HEK11)
          Length = 998

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 314 CPC---SGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVP 204
           CP    S +  S RC   DG+    S   YV+C  PP  P
Sbjct: 296 CPTHSFSDKEGSSRCECEDGYYRAPSDPPYVACTRPPSAP 335

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>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 205 GTRGGDRHDTYRSDETTPKCPSGP 276
           G R GD   T  SD ++P C SGP
Sbjct: 444 GARKGDESMTKASDSSSPSCSSGP 467

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -1

Query: 350 AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPP 213
           AG QGR  P G     G+  +P  PG  G  G    D       PP
Sbjct: 408 AGLQGRAGPPGARGEPGKNGAPGEPGAHGEQGDAGKDGETGAAGPP 453

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>RAVR1_RAT (Q5XI28) Protein raver-1|
          Length = 748

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 202 VGTRGGDRHDTYRSDETTPKCPSGPGHLGLRARPLQGHPPLGEHRPCPPASSLI 363
           +G  GGDR         +   P  P  +GLR   L+G P      P PP  SL+
Sbjct: 449 LGPSGGDREPMGLGPPASQLTPP-PAPMGLRGSSLRGLPKDSGPLPTPPGVSLL 501

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>BD02_MOUSE (P82020) Beta-defensin 2 precursor (Defensin, beta 2) (BD-2)|
           (mBD-2)
          Length = 71

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = -2

Query: 241 IDTCH---------VCPPPLSQPHSEFPKRLDCC 167
           +D CH         +CPP   +P S FP++  CC
Sbjct: 34  LDHCHTNGGYCVRAICPPSARRPGSCFPEKNPCC 67

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>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 347 GGQGRCSPSGGCPCSGRARSPRCPGPDGHLGV 252
           G  G C+  GG P +G    P  PGP G +G+
Sbjct: 477 GDSGFCACDGGVPNTGPPGEPGPPGPWGLIGL 508

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           D G QG+  P G    SG    P  PGP G  G
Sbjct: 202 DPGRQGKPGPKGDVGASGEQGIPGPPGPQGIRG 234

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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           D G QG+  P G    SG    P  PGP G  G
Sbjct: 203 DPGHQGKPGPKGDVGASGEQGIPGPPGPQGIRG 235

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>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+   GP   G + RP QG PP G  +  PP
Sbjct: 207 PRPTQGPPPTGPQPRPTQGPPPTGGPQQRPP 237



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 112 PQGPPPPG--GPQQRPPQGPPPPGGPQPRPP 140



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 70  PQGPPPPG--GPQPRPPQGPPPPGGPQPRPP 98



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 56  PQGPPPPG--GPQPRPPQGPPPPGGPQPRPP 84



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 PKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           P+ P  PG  G + RP QG PP G  +P PP
Sbjct: 42  PQGPPPPG--GPQPRPPQGPPPPGGPQPRPP 70

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>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
            AG  G+  P G    SG   SP  PGP G +G
Sbjct: 983  AGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVG 1014

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>BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 870

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +1

Query: 259 KCPSGPGHLGLRARPLQGHPPLGEHRPCPPAS 354
           K P+GPG  G  A P Q  P  G H P PPAS
Sbjct: 69  KKPAGPGS-GPPATPAQPQP--GLHAPAPPAS 97

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>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)|
          Length = 543

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
 Frame = -3

Query: 348 RRTGAMLPQRRMPLQRTSPQPQMPRPRWTFRRRLV*SIRVMSVPPPCPNPIQSFQ----- 184
           ++ G   PQ++ P +  +PQPQ P+                  PPP P P Q  +     
Sbjct: 426 QQPGYGYPQQQQPQRYATPQPQQPQ---------------RYAPPPAPEPQQPRREPRPP 470

Query: 183 KD*TVVLERLPSL----GVLFASVPLQLCGACVW 94
           +  +    R+P L    G L   V L + G  VW
Sbjct: 471 RQRSANPMRIPGLGCLKGCLVTVVVLFVAGWLVW 504

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>NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell|
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 1064

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
 Frame = +1

Query: 193 LNGVGTRGGDRHDTYR---------SDETTPKCPSGPGHLGLRARP-LQGHPPLGEHRPC 342
           +NG   R   +H TY          SDE  P     P H GL ++P    HP L E   C
Sbjct: 663 INGKRKRSQPQHFTYHPVPAIKTEPSDEYEPSLICSPAHGGLGSQPYYPQHPMLAESPSC 722

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>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)|
          Length = 360

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = -1

Query: 338 GRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCL------SPPLVPTP 198
           G   PSG    SG    P  PGPDG  G   +    SC+       PP +P P
Sbjct: 123 GERGPSGD---SGLPALPGAPGPDGAPGRPGTTPNASCIPERVFEPPPCLPCP 172

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTP 198
            AG +G   PSG     GR   P   GP G  G   S        PP  P P
Sbjct: 1050 AGPRGPAGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGP 1100

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>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 151 WQPF*NNSLVFLETLNGVGTRGGDRHDTYRSDETTPKCPSGPGHLGLR 294
           WQ +  N +VFL    G+  +     D   +  T+P CP  P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGLKNQSPAEADK-PATSTSPSCPPLPPHLPTR 60

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>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           DAG QG+  PSG     GR   P  PGP G  G
Sbjct: 383 DAGPQGKVGPSGAPGEDGR---PGPPGPQGARG 412

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>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 347  GGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
            G  G   P G    +G A  P  PGP GH G
Sbjct: 1063 GAMGPVGPRGPAGFTGPAGPPGPPGPPGHAG 1093

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTPFRVS 186
            AG +G   PSG     GR+  P   GP G  G   S        PP  P P  VS
Sbjct: 1056 AGPRGPAGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVS 1110

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           DAG QG+  PSG     GR   P  PGP G  G
Sbjct: 540 DAGPQGKVGPSGAPGEDGR---PGPPGPQGARG 569

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>BUR2_CANGA (Q6FX19) Protein BUR2|
          Length = 357

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 318 RMPLQRTSPQPQMPRPRWTFRRRLV 244
           ++P+    P+P M + +W FR RLV
Sbjct: 130 KIPVGNAGPRPNMDKLKWEFRDRLV 154

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 250 TTPKCPSGPGHLGLRARPLQGHPPLGEHRPCPP 348
           T P+ P  P       RP+QG PP     P PP
Sbjct: 518 TPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPP 550

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           DAG QG+  PSG     GR   P  PGP G  G
Sbjct: 500 DAGPQGKVGPSGAPGEDGR---PGPPGPQGARG 529

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           DAG QG+  PSG     GR   P  PGP G  G
Sbjct: 499 DAGPQGKVGPSGAPGEDGR---PGPPGPQGARG 528

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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 362 IKLDAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSS 243
           +K   GGQ  C  S  C C G  +   C  P  + GV  S
Sbjct: 297 VKKCNGGQVFCKDSCSCVCPGGDKDKTCTAPQVYDGVACS 336

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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
 Frame = -1

Query: 347 GGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVV---SSDRYVSCLSPPLVPTP 198
           GG G   P G     G    P  PGP G  G++     D     L PP  P P
Sbjct: 129 GGNGFRGPPGPSGLPGFPGPPGPPGPPGLAGIIPEGGGDLQCPALCPPGPPGP 181

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTP 198
            AG +G   PSG     GR   P   GP G  G   S        PP  P P
Sbjct: 1048 AGPRGPAGPSGPAGKDGRIGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGP 1098

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>Y929_HAEIN (P44940) Hypothetical protein HI0929|
          Length = 393

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 149 HWVYSLLLCPYSFVVPASGQIDFYLSCDDVADRIVW 42
           +W++  L+  + F+   SG+ DF+LS    A R  W
Sbjct: 150 NWIHEELIKHFQFLKQQSGKTDFHLSAMQDAGREDW 185

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -1

Query: 350 AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPP 213
           AG  G   P G     G+A     PGP G +G    D       PP
Sbjct: 577 AGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP 622

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>RS17_METTH (O26120) 30S ribosomal protein S17P|
          Length = 106

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 125 CPYSFVVPASGQIDFYLSCDDVADRIVWLERTY*RFIIK 9
           CP+   +P  GQI       D A+R V +ER++ +FI K
Sbjct: 18  CPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRK 56

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>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
           + G QG+  P G    SG    P  PGP G  G
Sbjct: 201 EPGQQGKQGPKGDVGVSGEQGVPGPPGPQGQRG 233

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTPFRVS 186
            AG +G   PSG     GR+  P   GP G  G   S        PP  P P  VS
Sbjct: 1056 AGPRGPAGPSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVS 1110

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>EIL2_ARATH (O23115) ETHYLENE-INSENSITIVE3-like 2 protein|
          Length = 518

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 327 PQRRMPLQRTSPQPQMPRPRWTFRRRLV*SIRVMSVPPPCPNPIQSFQKD*TVVLERLPS 148
           PQRR PL++    P  P  +  +  +L   +    VPPP   P           L++L  
Sbjct: 203 PQRRFPLEKGVTPPWWPTGKEDWWDQLSLPVDFRGVPPPYKKPHD---------LKKLWK 253

Query: 147 LGVLFASV 124
           +GVL   +
Sbjct: 254 IGVLIGVI 261

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>KFMS_FSVMD (P00545) Tyrosine-protein kinase transforming protein fms (EC|
           2.7.10.1)
          Length = 978

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 259 KCPSGPGHLGLRARPLQGHPPLGEHRPCPPAS 354
           + PSGPGH G  A      PPL     CP +S
Sbjct: 1   RMPSGPGHYGASAETPGPRPPL-----CPASS 27

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>FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)|
          Length = 808

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 236 YVSCLSPPLVPTPFRVSKKTRLLF*KGCHHWVYSLLLCPYSFVVPASGQIDFYLSCDDVA 57
           Y S  SP   P   R +     L+  G HH +Y  +    S  VP+SGQ    LS D  +
Sbjct: 290 YSSEFSPTHSPIQARHAPPAGTLY--GNHHGIYRQMKVEASSTVPSSGQEAQNLSMDSAS 347

Query: 56  DRI 48
             +
Sbjct: 348 SNL 350

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -1

Query: 350 AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPP 213
           AG  G   P G     G+A     PGP G +G    D       PP
Sbjct: 573 AGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP 618

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>TMM24_MOUSE (Q80X80) Transmembrane protein 24|
          Length = 706

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 366 LNQARCRRTGAMLPQRRMPLQRTSPQPQMPRPRWTFRRRL 247
           +N   C   G ++P  + P   +  QP +PRP   F R+L
Sbjct: 255 VNLRACSAPGGLVPSEKPPTM-SQAQPSIPRPTRLFLRQL 293

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>SECA_TREPA (O83394) Preprotein translocase secA subunit|
          Length = 916

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 GPGHLGLRARPLQGHPPLGEHRPCPPAS 354
           G GH  L A P+Q    +G + PCP  S
Sbjct: 879 GRGHGSLSALPIQAGAKVGRNTPCPCGS 906

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>PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 241 IDTCHVCPPPLSQPHSEFPKRLDC 170
           + T HV PPP + P    P+  DC
Sbjct: 159 MSTLHVSPPPSADPARGLPRSRDC 182

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>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 353  DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
            D GG G   P G     G A +P  PG  G +G
Sbjct: 2332 DRGGAGGPGPKGNRGRRGNAGNPGTPGQKGEIG 2364

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTPFRVS 186
            +G  G+  P G    +G   SP   GP G  G            PP  P P  ++
Sbjct: 896  SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIA 950

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>AT11A_MOUSE (P98197) Probable phospholipid-transporting ATPase IH (EC 3.6.3.1)|
            (ATPase class I type 11A) (ATPase IS)
          Length = 1187

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -1

Query: 329  SPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPT 201
            SPSG   CS R  S  CP    H G+    RY  C S   +PT
Sbjct: 1146 SPSGRVVCS-RWESEECPVLPLHPGLPHKARYGCCRSSLEMPT 1187

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>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 265 PSGPGHLGLRARPLQGHPPLGEHRP 339
           PSGP H G  ARP   HPP  + +P
Sbjct: 232 PSGPHHQGTLARP---HPPPYQSKP 253

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>C1QB_HUMAN (P02746) Complement C1q subcomponent subunit B precursor|
          Length = 251

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -1

Query: 347 GGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVSSDRYVSCLSPPLVPTPFRVSKKTR 174
           G  G+  P G     G   +P  PGP G  G   + + ++  +   +  P R  +  R
Sbjct: 82  GNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYKATQKIAFSATRTINVPLRRDQTIR 139

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>SNRK_HUMAN (Q9NRH2) SNF-related serine/threonine-protein kinase (EC 2.7.11.1)|
           (SNF1-related kinase)
          Length = 765

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 353 DAGGQGRCSPSGGCPCSGRARSPRCPGPDGHLGVVS 246
           +AGG    S SGG P +    + RC GP   + + S
Sbjct: 602 NAGGGSPSSGSGGNPTNTSGTTRRCAGPSNSMQLAS 637

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>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = -1

Query: 350 AGGQGRCSPSGGCPCSGRARSPR---CPGPDGHLGVVSSDRYVSCLSPPLVP 204
           + G   CSP   CP    A +P    CP  +G     S      C  PP  P
Sbjct: 309 SAGNAPCSP---CPARSHAANPAAPVCPCLEGFYRASSDPPEAPCTGPPSAP 357

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>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)|
          Length = 3133

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 335 RCSPSGGCPCSGRARSPRCPGPDGHL 258
           RC P+  CPC    RS     PDGHL
Sbjct: 202 RCVPATQCPCHHAGRS----YPDGHL 223

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>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 350  AGGQGRCSPSGGCPCSGRARSPRCPGPDGHLG 255
            AG  G+  P G    SG   +P  PGP G +G
Sbjct: 983  AGQPGQPGPKGDPGISGTPGAPGLPGPKGSVG 1014

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>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D|
          Length = 521

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 327 PQRRMPLQRTSPQPQMPRPR 268
           PQ+  P Q+  PQPQ P+P+
Sbjct: 373 PQQPQPPQQQPPQPQQPQPQ 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,271,848
Number of Sequences: 219361
Number of extensions: 1433800
Number of successful extensions: 5672
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 4649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5644
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result