ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29g05 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 107 bits (268), Expect = 1e-23 Identities = 55/116 (47%), Positives = 79/116 (68%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ES AI +I H E A+++VYDP+VQ+SQ++ DLA + A+ +++ +TV A + Sbjct: 354 ESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTS--AQDVERLITVESDPYAAAR 411 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIGT 163 GA AIVV+TEW EFV L++ IH+ M PA IFDGR IL ++ L+ IGF+ +IGT Sbjct: 412 GAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGT 467
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 99.8 bits (247), Expect = 4e-21 Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 9/124 (7%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLA--------DYGAKPAEPIQ-KAVTV 358 E+PAID+ ++A +++YDP+V E QI DL+ +P P K V+V Sbjct: 343 ETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSV 402 Query: 357 CPSALEACKGADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKV 178 A EA K A + ++TEW EF LD+Q I D M KPAF+FDGRNI+ +L+ IGF V Sbjct: 403 VWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIV 462 Query: 177 VSIG 166 SIG Sbjct: 463 YSIG 466
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 99.0 bits (245), Expect = 7e-21 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ES +I + + E A + +YDP+V QI++DL+ G + + + VT+ EAC Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACD 406 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILK--RQELKNIGFKVVSIG 166 GA A+V+ TEW F LD++ IH M KPAFIFDGR +L EL+ IGF++ +IG Sbjct: 407 GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIG 463
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 98.6 bits (244), Expect = 9e-21 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ES +I + + E A + +YDP+V QI++DL+ G + + + VT+ EAC Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQVARLVTISKDPYEACD 406 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILK--RQELKNIGFKVVSIG 166 GA A+V+ TEW F LD++ IH M KPAFIFDGR +L EL+ IGF++ +IG Sbjct: 407 GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIG 463
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 98.6 bits (244), Expect = 9e-21 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ES +I + + E A + +YDP+V QI++DL+ G + + + VT+ EAC Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVSRLVTISKDPYEACD 406 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILK--RQELKNIGFKVVSIG 166 GA A+V+ TEW F LD++ IH M KPAFIFDGR +L EL+ IGF++ +IG Sbjct: 407 GAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIG 463
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 98.6 bits (244), Expect = 9e-21 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ES +I + + E A + +YDP+V QI++DL+ G + + + VT+ EAC Sbjct: 347 ESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVSRLVTISKDPYEACD 406 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILK--RQELKNIGFKVVSIG 166 GA A+V+ TEW F LD++ IH M KPAFIFDGR +L EL+ IGF++ +IG Sbjct: 407 GAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIG 463
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 89.7 bits (221), Expect = 4e-18 Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPA-EPIQKAVTVCPSALEAC 334 E+ AI + E A + +YDP+V+ QI+ DL + E ++KAV + A Sbjct: 343 ETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKVKKAVQIHSDPYSAV 402 Query: 333 KGADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIG 166 + A+V+ TEW EFV+LD++ I+ +M KPA+IFDGR IL + L+ IGF V +IG Sbjct: 403 RATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIG 458
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 70.1 bits (170), Expect = 3e-12 Identities = 41/115 (35%), Positives = 61/115 (53%) Frame = -3 Query: 507 SPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACKG 328 SPAI ++ ++ V +DP I L+ A + K + SA++ACK Sbjct: 328 SPAIAIVKILLNKDVYVKAFDP------IGLENAKKNLE-----HKNLLYLDSAVDACKS 376 Query: 327 ADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIGT 163 D IV+ TEW EF L+WQ I+D + P I D RNIL + +K IGF+ ++G+ Sbjct: 377 VDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGS 430
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 70.1 bits (170), Expect = 3e-12 Identities = 42/115 (36%), Positives = 62/115 (53%) Frame = -3 Query: 507 SPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACKG 328 SPAI++I ++ V +DP I L+ A + K + SA+EACK Sbjct: 330 SPAIEIITILLNKDVYVKAFDP------IGLENAKKNLE-----HKNLLYFASAVEACKS 378 Query: 327 ADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIGT 163 D IV+ TEW EF L+WQ I++ + P I D RNIL + +K IGF+ ++G+ Sbjct: 379 VDIIVIATEWSEFKELNWQEIYNLVKSP-MIIDLRNILDNEVMKKIGFRYYAVGS 432
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 67.4 bits (163), Expect = 2e-11 Identities = 41/118 (34%), Positives = 58/118 (49%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 +SPAI ++ ARVT YDPE G + A + + + EA Sbjct: 334 DSPAIAVVQALQDAGARVTGYDPE-------------GMENARKLIEGLDCARDPYEAAA 380 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIGTGD 157 ADA+V++TEW EF LD+ + TM P + D RNI ++ E+ GF+ SIG D Sbjct: 381 EADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYASIGRPD 437
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 57.4 bits (137), Expect = 2e-08 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKA-VTVCPSALEAC 334 E+P++ L+ RV +DP A A+ E + A +T+ S A Sbjct: 335 EAPSLVLLEALLRHGVRVRAHDPVAN--------AGVAARYPEAVACARLTLHDSPYAAV 386 Query: 333 KGADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIG 166 +GADA+V+VTEWK+F D+Q I +M P + DGRN+ + +GF IG Sbjct: 387 EGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441
>Y428_METJA (Q57871) Hypothetical protein MJ0428 (EC 1.1.1.-)| Length = 427 Score = 45.4 bits (106), Expect = 9e-05 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACK 331 ESPA +++ E V YD ++ L+ D EA + Sbjct: 326 ESPAEKVVSKLIDEGFEVKCYDKYARDFIYPLNSLD--------------------EAVE 365 Query: 330 GADAIVVVTEWKEFVNLDWQSIHDTMN--KPAFIFDGRNILKRQELKNIGFKVVSIGTG 160 GAD IV++ E E+ N D + I + + K I D +NIL R+ + GFKV +G G Sbjct: 366 GADIIVILAEHDEYKNFDKEDIKNIASKVKNKIILDTKNILNRELWEKEGFKVYVLGDG 424
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 45.4 bits (106), Expect = 9e-05 Identities = 22/59 (37%), Positives = 35/59 (59%) Frame = -3 Query: 342 EACKGADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIG 166 E K D I++ E+ +F DW+ I + + K +FDGRNIL +++K +GFK +G Sbjct: 838 ETVKNVDGIIITVEY-DFNKEDWEKIGNLV-KEKVVFDGRNILDVEKIKKLGFKYYGVG 894
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 42.4 bits (98), Expect = 8e-04 Identities = 29/114 (25%), Positives = 52/114 (45%) Frame = -3 Query: 507 SPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAEPIQKAVTVCPSALEACKG 328 +PA+D+I A V YDP + + + A E ++ V A + Sbjct: 330 APALDIIPMLQQLGAHVKAYDP--------IAIPEASAILGEQVEYYTDV----YAAMED 377 Query: 327 ADAIVVVTEWKEFVNLDWQSIHDTMNKPAFIFDGRNILKRQELKNIGFKVVSIG 166 DA +++T+W E ++ + + +P I DGRN+ +E++ G+ SIG Sbjct: 378 TDACLILTDWPEVKEMELVKVKTLLKQPVII-DGRNLFSLEEMQAAGYIYHSIG 430
>Y2096_AERPE (Q9YA42) UPF0095 protein APE2096| Length = 426 Score = 33.5 bits (75), Expect = 0.35 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Frame = -3 Query: 510 ESPAIDLINHFXSERARVTVYDPEVQESQIMLDLADYGAKPAE--PIQKAVTVCPSALEA 337 E PA + + A P VQE AKP E P T+ + LEA Sbjct: 286 EKPAEEAVKREEEAAAEAKPPAPAVQEK---------AAKPPEEKPPTVKFTIPKAVLEA 336 Query: 336 CKGA----DAIVVVTEWKEFVNLDWQSIHDTMNKP------AFIFDGRNILKRQELKNIG 187 K +AIV EW+E L + ++D ++K A +FDG I+ ++ L Sbjct: 337 AKELRGTLEAIVYDKEWRELDRLKVRELYDYISKSEPGRIYAVVFDG--IITQRLLDIAS 394 Query: 186 FKVVSIGTGDRL 151 K V I G+R+ Sbjct: 395 EKGVGIIIGNRI 406
>CRYM_HUMAN (Q14894) Mu-crystallin homolog (NADP-regulated thyroid-hormone| binding protein) Length = 314 Score = 33.1 bits (74), Expect = 0.46 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 18/72 (25%) Frame = -3 Query: 393 KPAEPIQKAVTVCPSALEACKGADAIVVVT---------EWKE---FVNL------DWQS 268 K A+ +Q V VC S EA GAD I+ VT EW + +N DW+ Sbjct: 176 KFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRE 235 Query: 267 IHDTMNKPAFIF 232 + D + K A ++ Sbjct: 236 LDDELMKEAVLY 247
>CRYM_RAT (Q9QYU4) Mu-crystallin homolog (CDK108)| Length = 313 Score = 32.0 bits (71), Expect = 1.0 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 18/72 (25%) Frame = -3 Query: 393 KPAEPIQKAVTVCPSALEACKGADAIVVVT---------EWKE---FVNL------DWQS 268 K A +Q V VC S EA GAD I+ VT EW + +N DW+ Sbjct: 175 KFASSVQGDVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRE 234 Query: 267 IHDTMNKPAFIF 232 + D + K A ++ Sbjct: 235 LDDELMKQAVLY 246
>CRYM_MOUSE (O54983) Mu-crystallin homolog| Length = 313 Score = 30.8 bits (68), Expect = 2.3 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 18/72 (25%) Frame = -3 Query: 393 KPAEPIQKAVTVCPSALEACKGADAIVVVT---------EWKE---FVNL------DWQS 268 K A +Q V VC S EA GAD I+ VT EW + +N DW+ Sbjct: 175 KFASTVQGDVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRE 234 Query: 267 IHDTMNKPAFIF 232 + D + + A ++ Sbjct: 235 LDDELMRQAVLY 246
>ATP6_RICCN (Q92JP0) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 242 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 397 TVVGQVEHDLRFLDLGVVHGDP 462 T+VG V+H LRFL L + HG P Sbjct: 129 TIVGFVKHGLRFLTLFLPHGTP 150
>CRYM_MACFL (Q28488) Mu-crystallin| Length = 314 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 18/72 (25%) Frame = -3 Query: 393 KPAEPIQKAVTVCPSALEACKGADAIVVVT---------EWKE---FVNL------DWQS 268 K A+ ++ V VC S EA GAD I+ VT EW + +N DW+ Sbjct: 176 KFAQTVKGDVRVCSSVQEAVTGADVIITVTMATKPILFGEWVKPGAHINAVGASRPDWRE 235 Query: 267 IHDTMNKPAFIF 232 + D + K ++ Sbjct: 236 LDDEIMKNCVLY 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,072,882 Number of Sequences: 219361 Number of extensions: 1070173 Number of successful extensions: 2379 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2370 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
