ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29f09 |
|---|---|
| Clone Library Name | barley_pub |
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 129 bits (324), Expect = 5e-30 Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%) Frame = -2 Query: 529 PGRKTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARV 350 P + TCPIDALKL ACVDVL GL+H+ IG A+ CCPL+ G+ DLDAA+CLCTTIR ++ Sbjct: 256 PAQPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKL 315 Query: 349 LNINIYLPVALRLLI-TCGKHPPNGFQCPT 263 LNINI LP+AL++LI CGK+PP F+CP+ Sbjct: 316 LNINIILPIALQVLIDDCGKYPPKDFKCPS 345
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 93.2 bits (230), Expect = 4e-19 Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Frame = -2 Query: 529 PGRKTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARV 350 P CP DALKL C DVL+ + ++VIG CC L++G+ +L+AA+CLCT I+A + Sbjct: 49 PSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANI 108 Query: 349 LNINIYLPVALRLLI-TCGKHPPNGFQC 269 L N+ LP+AL L++ CGK PNGF+C Sbjct: 109 LGKNLNLPIALSLVLNNCGKQVPNGFEC 136
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 86.3 bits (212), Expect = 5e-17 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Frame = -2 Query: 514 CPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINI 335 CPIDALKL C VL GLV +G +CCPL++G+ DLDAALCLCT I+A VL I++ Sbjct: 48 CPIDALKLKVCAKVL-GLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHL 104 Query: 334 YLPVALRLLI-TCGKHPPNGFQCP 266 +P++L ++ CG+ P F CP Sbjct: 105 NVPLSLNFILNNCGRICPEDFTCP 128
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 523 RKTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRA-RVL 347 R +CP L+ C+++L G + V CC L+ G+ D++A +CLC +RA +L Sbjct: 5 RPSCP----DLSICLNILGGSLGTV------DDCCALIGGLGDIEAIVCLCIQLRALGIL 54 Query: 346 NINIYLPVALRLLITCGKHPPNGFQCP 266 N+N L + +L +CG+ P+ CP Sbjct: 55 NLNRNLQL---ILNSCGRSYPSNATCP 78
>KR122_HUMAN (P59991) Keratin-associated protein 12-2 (Keratin-associated| protein 12.2) (High sulfur keratin-associated protein 12.2) Length = 146 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = -3 Query: 183 CGVGCYSACSLQCCA---CLRFVCVSIDLDRFSCSVLVVCR-SVATPCGFRPS 37 C C S C CCA C CV + SC V V C+ SV P F+P+ Sbjct: 2 CHTSCSSGCQPACCAPSPCQPACCVPSSC-QASCCVPVGCQSSVCVPVSFKPA 53
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -3 Query: 186 ACGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 AC GC S+C+ CC +C C S + +C V V C++V Sbjct: 66 ACQSGCTSSCTPSCCQQSSCQPACCTSSPCQQ-ACCVPVCCKTV 108
>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)| Length = 182 Score = 30.0 bits (66), Expect = 4.2 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 9/58 (15%) Frame = -3 Query: 216 GSRHSFTTMLACGVGCYSACSLQCCACL---------RFVCVSIDLDRFSCSVLVVCR 70 GS+ + CG GC S+C + C C+ + C S + SC V V C+ Sbjct: 122 GSKGGCGSCGGCGSGCGSSCCVPVCCCVPACSCSSCGKGGCGSCGCSQSSCCVPVCCQ 179
>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated| protein 10.2) (High sulfur keratin-associated protein 10.2) (Keratin-associated protein 18-2) (Keratin-associated protein 18.2) Length = 255 Score = 30.0 bits (66), Expect = 4.2 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -3 Query: 186 ACGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 AC GC S+C+ CC +C C S + +C V V C+ V Sbjct: 66 ACQSGCTSSCTPSCCQQSSCQPACCTSSPCQQ-ACCVPVCCKPV 108
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 30.0 bits (66), Expect = 4.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C++V Sbjct: 196 CQSGCISSCTPSCCQQSSCQPACCTSSSCQQ-ACCVPVCCKTV 237 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C++V Sbjct: 77 CQSGCTSSCTPSCCQQSSCQLACCASSPCQQ-ACCVPVCCKTV 118
>GOGA2_RAT (Q62839) Golgin subfamily A member 2 (Cis-Golgi matrix protein| GM130) Length = 986 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +2 Query: 83 NTEQENRSRSIETHTNRRHAQHWSEQA 163 N EQE R +E R AQHWSEQA Sbjct: 485 NREQEGRMLELE-----REAQHWSEQA 506
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C++V Sbjct: 77 CQSGCTSSCTPSCCQQSSCQLACCASSPCQQ-ACCVPVCCKTV 118
>KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-associated| protein 10.12) (High sulfur keratin-associated protein 10.12) (Keratin-associated protein 18-12) (Keratin-associated protein 18.12) Length = 245 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C++V Sbjct: 72 CQSGCTSSCTPSCCQQSSCQPACCTSSPCQQ-ACCVPVCCKTV 113
>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated| protein 10.7) (High sulfur keratin-associated protein 10.7) (Keratin-associated protein 18-7) (Keratin-associated protein 18.7) Length = 370 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C++V Sbjct: 77 CQSGCTSSCTPSCCQQSSCQLACCASSPCQQ-ACCVPVCCKTV 118 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -3 Query: 183 CGVGCYSACSLQCC---ACLRFVCVSIDLDRFSCSVLVVCRSV 64 C GC S+C+ CC +C C S + +C V V C+ V Sbjct: 196 CQSGCISSCTPSCCQQSSCKPACCTSSPCQQ-ACCVPVCCKPV 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,942,850 Number of Sequences: 219361 Number of extensions: 1193769 Number of successful extensions: 3309 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3297 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
