ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
6emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 72 2e-09
7emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 72 2e-09
8gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome... 44 0.38
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11dbj|AK071040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
12ref|XM_633537.1| Dictyostelium discoideum hypothetical protein (... 40 6.0
13gb|AC123645.7| Mus musculus chromosome 15, clone RP23-99N19, com... 40 6.0
14gb|AE008598.1| Rickettsia conorii str. Malish 7, section 30 of 1... 40 6.0
15gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, compl... 40 6.0
16gb|AC005062.1| Homo sapiens BAC clone CTB-95A14 from 7, complete... 40 6.0
17emb|AL357519.19| Human DNA sequence from clone RP11-367G18 on ch... 40 6.0
18gb|AC079467.2|AC079467 Homo sapiens chromosome 5 clone RP11-357D... 40 6.0
19dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.0
20emb|AL669929.14| Mouse DNA sequence from clone RP23-197J15 on ch... 40 6.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
to top
>dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B05, full
           insert sequence
          Length = 1201

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 380 tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
           ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 909 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 870
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
to top
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
to top
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 380   tcgccggaggtgagggcgtgccacatgccggggtagaggt 419
             ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
to top
>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence
          Length = 148167

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 212   gcttttgtgctattttgtttgt 233
             ||||||||||||||||||||||
Sbjct: 82246 gcttttgtgctattttgtttgt 82225
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    ttagtacaataatgaattaat 124
              |||||||||||||||||||||
Sbjct: 173573 ttagtacaataatgaattaat 173593
to top
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1435_F07
          Length = 139041

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    ttagtacaataatgaattaat 124
              |||||||||||||||||||||
Sbjct: 122600 ttagtacaataatgaattaat 122620
to top
>dbj|AK071040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H22, full
            insert sequence
          Length = 2195

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttagtacaataatgaattaat 124
            |||||||||||||||||||||
Sbjct: 1732 ttagtacaataatgaattaat 1752
to top
>ref|XM_633537.1| Dictyostelium discoideum hypothetical protein (DDB0186014), partial
           mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 caataatgaattaatacacc 129
           ||||||||||||||||||||
Sbjct: 90  caataatgaattaatacacc 71
to top
>gb|AC123645.7| Mus musculus chromosome 15, clone RP23-99N19, complete sequence
          Length = 192973

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ctggtatacaagaagacaga 81
              ||||||||||||||||||||
Sbjct: 158831 ctggtatacaagaagacaga 158850
to top
>gb|AE008598.1| Rickettsia conorii str. Malish 7, section 30 of 114 of the complete
            genome
          Length = 11461

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  aaccatgcctacagctgctc 201
            ||||||||||||||||||||
Sbjct: 1997 aaccatgcctacagctgctc 1978
to top
>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence
          Length = 194221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ttaaccatgcctacagctgc 199
              ||||||||||||||||||||
Sbjct: 151583 ttaaccatgcctacagctgc 151602
to top
>gb|AC005062.1| Homo sapiens BAC clone CTB-95A14 from 7, complete sequence
          Length = 119927

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aaatagcactgccatatgat 29
             ||||||||||||||||||||
Sbjct: 49521 aaatagcactgccatatgat 49540
to top
>emb|AL357519.19| Human DNA sequence from clone RP11-367G18 on chromosome 6 Contains a
              putative novel gene and a ubiquitin/ ribosomal protein S27A
              (RPS27A) fusion protein pseudogene, complete sequence
          Length = 157021

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 9      gaaatagcactgccatatgatatatctt 36
              ||||||||||| ||| ||||||||||||
Sbjct: 100624 gaaatagcacttccacatgatatatctt 100597
to top
>gb|AC079467.2|AC079467 Homo sapiens chromosome 5 clone RP11-357D18, complete sequence
          Length = 141591

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   tgagcttcttgtcctggctc 439
             ||||||||||||||||||||
Sbjct: 77156 tgagcttcttgtcctggctc 77175
to top
>dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003,
            complete sequence
          Length = 88828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ttgcatggtatactggtata 69
            ||||||||||||||||||||
Sbjct: 7004 ttgcatggtatactggtata 7023
to top
>emb|AL669929.14| Mouse DNA sequence from clone RP23-197J15 on chromosome X, complete
              sequence
          Length = 204206

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    aataatgaattaatacacca 130
              ||||||||||||||||||||
Sbjct: 143691 aataatgaattaatacacca 143710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,029,780
Number of Sequences: 3902068
Number of extensions: 4029780
Number of successful extensions: 74258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74053
Number of HSP's gapped (non-prelim): 205
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top