ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29f02 |
|---|---|
| Clone Library Name | barley_pub |
>XIP1_WHEAT (Q8L5C6) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog) (XIP-I protein) Length = 304 Score = 105 bits (263), Expect = 4e-23 Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 3/86 (3%) Frame = -3 Query: 437 RIFVRFYD-DADCAAN--WQRQWDKWTAAYPSAQIYLGLPASEQKVGYVHPKNLYYGVIQ 267 R+ VR Y+ D C N W+ WDKWTAAYP+ + Y+GL A ++ +VHPKN+YYGV Sbjct: 213 RVHVRTYESDKWCNQNLGWEGSWDKWTAAYPATRFYVGLTADDKSHQWVHPKNVYYGVAP 272 Query: 266 VVQKAANYGGVMVWERYEDKRTNYSS 189 V QK NYGG+M+W+RY DK+TNYSS Sbjct: 273 VAQKKDNYGGIMLWDRYFDKQTNYSS 298
>XIP1_ORYSA (Q7GCM7) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog a) (RIXI protein) Length = 304 Score = 94.0 bits (232), Expect = 2e-19 Identities = 48/100 (48%), Positives = 60/100 (60%), Gaps = 8/100 (8%) Frame = -3 Query: 446 LVGRIFVRFYDDADCAANW------QRQWDKWTAAYPSAQIYLGLPASEQ--KVGYVHPK 291 L RI VRFYDDA C+ N QW+KWTA YP + +YLGL A+ K V K Sbjct: 205 LFERIHVRFYDDATCSYNHAGLAGVMAQWNKWTARYPGSHVYLGLAAANVPGKNDNVFIK 264 Query: 290 NLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSSYAIQWA 171 LYY ++ VQKA NYGG+M+W+R+ DK+T Y WA Sbjct: 265 QLYYDLLPNVQKAKNYGGIMLWDRFYDKQTGYGKTVKYWA 304
>XIP2_ORYSA (Q53NL5) Xylanase inhibitor protein 2 precursor (Class III| chitinase homolog h) Length = 290 Score = 82.0 bits (201), Expect = 6e-16 Identities = 35/83 (42%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Frame = -3 Query: 437 RIFVRFYDDADCAANWQRQWDKWTAAYPSAQIYLGLPAS-EQKVGYVHPKNLYYGVIQVV 261 RI VR + D C + + W+KW AA+P +++Y+GL AS EQ ++ K+LYY ++Q V Sbjct: 205 RIHVRMFGDEQCTMSPRYSWEKWAAAFPGSKVYIGLVASPEQDSAWMFQKDLYYEMLQFV 264 Query: 260 QKAANYGGVMVWERYEDKRTNYS 192 + NYGG+ +++RY DK+ NY+ Sbjct: 265 RSLPNYGGLAIYDRYFDKKANYT 287
>CHLY_HEVBR (P23472) Hevamine-A precursor [Includes: Chitinase (EC 3.2.1.14);| Lysozyme (EC 3.2.1.17)] Length = 311 Score = 63.9 bits (154), Expect = 2e-10 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Frame = -3 Query: 434 IFVRFYDDADCAA------NWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYY 279 ++V+FY++ C N W++WT + + +I+LGLPA+ + G YV P L Sbjct: 204 VWVQFYNNPPCQYSSGNINNIINSWNRWTTSINAGKIFLGLPAAPEAAGSGYVPPDVLIS 263 Query: 278 GVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 ++ ++K+ YGGVM+W ++ D + YSS Sbjct: 264 RILPEIKKSPKYGGVMLWSKFYDDKNGYSS 293
>CHIB_TOBAC (P29061) Basic endochitinase precursor (EC 3.2.1.14)| Length = 294 Score = 62.8 bits (151), Expect = 4e-10 Identities = 30/89 (33%), Positives = 58/89 (65%), Gaps = 7/89 (7%) Frame = -3 Query: 434 IFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 ++V+FY++ +C + N++R+W++WT+ P+ ++Y+GLPA++ G Y+ + L Sbjct: 201 VWVQFYNNPECEFMSNSENFKRRWNQWTSI-PAKKLYIGLPAAKTAAGNGYIPKQVLMSQ 259 Query: 275 VIQVVQKAANYGGVMVWERYEDKRTNYSS 189 V+ ++ ++ YGGVM+W R D + YSS Sbjct: 260 VLPFLKGSSKYGGVMLWNRKFDVQCGYSS 288
>CHIA_ARATH (P19172) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 302 Score = 62.8 bits (151), Expect = 4e-10 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Frame = -3 Query: 434 IFVRFYDDADCA------ANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYY 279 ++++FY++ C+ N W+KWT + + + +LGLPA+ + G Y+ P L Sbjct: 207 VWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTS 266 Query: 278 GVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 ++ ++K+ YGGVM+W ++ D + YSS Sbjct: 267 QILPTLKKSRKYGGVMLWSKFWDDKNGYSS 296
>CHIT3_VITVI (P51614) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 301 Score = 60.5 bits (145), Expect = 2e-09 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 8/90 (8%) Frame = -3 Query: 434 IFVRFYDDADC------AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYY 279 ++V+FY++ C N W++WT++ S ++GLPAS G ++ L Sbjct: 206 VWVQFYNNPPCQYSSGNTNNLLNSWNRWTSSINSTGSFMGLPASSAAAGRGFIPANVLTS 265 Query: 278 GVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 ++ V++++ YGGVM+W +Y D ++ YSS Sbjct: 266 QILPVIKRSPKYGGVMLWSKYYDDQSGYSS 295
>CHIA_CUCSA (P17541) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 292 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 8/87 (9%) Frame = -3 Query: 446 LVGRIFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKV---GYVHPK 291 L ++V+FY++ C A N W++WTA +P++++Y+GLPA+ + G++ Sbjct: 195 LFDSVWVQFYNNPPCMFADNADNLLSSWNQWTA-FPTSKLYMGLPAAREAAPSGGFIPAD 253 Query: 290 NLYYGVIQVVQKAANYGGVMVWERYED 210 L V+ ++ ++NYGGVM+W + D Sbjct: 254 VLISQVLPTIKASSNYGGVMLWSKAFD 280
>CHIA_CICAR (P36908) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 293 Score = 55.5 bits (132), Expect = 6e-08 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 9/91 (9%) Frame = -3 Query: 434 IFVRFYDDADCAA------NWQRQWDKWTAAYPSAQIYLGLPASEQKV---GYVHPKNLY 282 ++V+FY++ C N W++WT++ + Q++LG+PAS+ G + L Sbjct: 198 VWVQFYNNPQCQYSNGNINNLVNAWNQWTSSQ-AKQVFLGVPASDAAAPSGGLIPADVLT 256 Query: 281 YGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 V+ ++ + YGGVM+W+R+ D ++ YS+ Sbjct: 257 SQVLPAIKTSPKYGGVMIWDRFNDAQSGYSN 287
>CHIA_PHAAN (P29024) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 298 Score = 52.8 bits (125), Expect = 4e-07 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 8/93 (8%) Frame = -3 Query: 434 IFVRFYDDADCAANWQR------QWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYY 279 ++V+FY++ C + W++WT++ + Q++LG+PAS G ++ L Sbjct: 204 VWVQFYNNPPCQYSSGNTNDLISSWNQWTSSQ-AKQLFLGVPASTAAAGSGFIPADVLTS 262 Query: 278 GVIQVVQKAANYGGVMVWERYEDKRTNYSSYAI 180 V+ ++ ++ YGGVM+W+R+ D ++ YS I Sbjct: 263 QVLPTIKGSSKYGGVMLWDRFNDGQSGYSGAII 295
>CONB_CANEN (P49347) Concanavalin B precursor (Con B)| Length = 324 Score = 52.8 bits (125), Expect = 4e-07 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 12/99 (12%) Frame = -3 Query: 434 IFVRFYDDADC---AANWQR---QWDKWT-AAYP-SAQIYLGLPASEQKV---GYVHPKN 288 IFVRFY+D C N QR W WT + YP ++L LPAS+ GY+ P Sbjct: 209 IFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKNLFLELPASQATAPGGGYIPPSA 268 Query: 287 LYYGVIQVVQKA-ANYGGVMVWERYEDKRTNYSSYAIQW 174 L V+ + Y G+ +W R DK T YS+ I++ Sbjct: 269 LIGQVLPYLPDLQTRYAGIALWNRQADKETGYSTNIIRY 307
>CHIE_BETVU (P36910) Acidic endochitinase SE2 precursor (EC 3.2.1.14)| Length = 293 Score = 52.0 bits (123), Expect = 7e-07 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Frame = -3 Query: 434 IFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 ++V+FY++ C A N W++WT + QI+LGLPAS G ++ L Sbjct: 202 VWVQFYNNPPCQYDTSADNLLSSWNQWTTVQAN-QIFLGLPASTDAAGSGFIPADALTSQ 260 Query: 275 VIQVVQKAANYGGVMVWERYEDKRTNYSS 189 V+ ++ +A YGGVM+W + D + YSS Sbjct: 261 VLPTIKGSAKYGGVMLWSKAYD--SGYSS 287
>CHIA_TOBAC (P29060) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 291 Score = 49.7 bits (117), Expect = 3e-06 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%) Frame = -3 Query: 434 IFVRFYDDADC------AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--YVHPKNLYY 279 ++V+FY++ C A N + W++W A + +I+LGLPA++ G ++ L Sbjct: 199 VWVQFYNNPPCQYSGGSADNLKNYWNQWNAIQ-AGKIFLGLPAAQGAAGSGFIPSDVLVS 257 Query: 278 GVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 V+ ++ + YGGVM+W ++ D YSS Sbjct: 258 QVLPLINGSPKYGGVMLWSKFYD--NGYSS 285
>CHIT_YEAST (P29029) Endochitinase precursor (EC 3.2.1.14) (Soluble cell wall| protein 2) Length = 562 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = -3 Query: 431 FVRFYDDADCAANWQRQWDKW------TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 F++FY++ C+ + Q WD W + + +++LGLP S G Y+ +L Sbjct: 210 FIQFYNNY-CSVSGQFNWDTWLTYAQTVSPNKNIKLFLGLPGSASAAGSGYISDTSLLES 268 Query: 275 VIQVVQKAANYGGVMVWE 222 I + ++++GG+ +W+ Sbjct: 269 TIADIASSSSFGGIALWD 286
>CHI1_CANAL (P46876) Chitinase 1 precursor (EC 3.2.1.14)| Length = 462 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = -3 Query: 431 FVRFYDDADCAANWQRQWDKWT--AAYPSAQIYLGLPASEQKV--GYVHPKNLYYGVIQV 264 F++FY++ C+ N Q W+ W+ A S ++YLGLP S G+V + V+ Sbjct: 200 FIQFYNNY-CSLNQQFNWNSWSNYARGKSIKLYLGLPGSSSSAGSGFVGLSTV-QRVVAS 257 Query: 263 VQKAANYGGVMVWE 222 ++ +++GG+ +W+ Sbjct: 258 IKGDSSFGGISIWD 271
>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)| Length = 583 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Frame = -3 Query: 431 FVRFYDDADCAANWQRQWDKWTAAYPSA-----QIYLGLPASEQKVGYVHPKNLYYGVIQ 267 F++FY++ C+ N Q +D W+ SA ++++G+PA+ GYV L I+ Sbjct: 207 FIQFYNNY-CSINGQFNYDTWSKFADSAPNKNIKLFVGVPATSNIAGYVDTSKL-SSAIE 264 Query: 266 VVQKAANYGGVMVWE 222 ++ +++ GV +W+ Sbjct: 265 EIKCDSHFAGVSLWD 279
>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)| Length = 860 Score = 37.7 bits (86), Expect = 0.013 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (21%) Frame = -3 Query: 434 IFVRFYDDADCAANWQRQW-----------DKWT-----AAYPSAQIYLGLPASEQ---K 312 IF++FY++ C+A ++W D W + P A++++GLPAS+ K Sbjct: 228 IFIQFYNNPSCSA---KRWVTNPKSVTYTVDDWVKYIRKSGNPLAKLFIGLPASKSAAAK 284 Query: 311 VGYVHPKNLYYGVIQVVQK-AANYGGVMVWE 222 Y+ P V + K + +GG+MVWE Sbjct: 285 EDYLTPGEATKIVSTYMAKYPSTFGGMMVWE 315
>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)| Length = 542 Score = 32.7 bits (73), Expect = 0.42 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Frame = -3 Query: 428 VRFYDDADCAANWQR----QWDKW---TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 V+FY++ C+A WD W T+ + +I +P S G YV L Sbjct: 217 VQFYNNY-CSATGSSFNFDTWDNWAKTTSPNKNVKIMFTVPGSSTAAGSGYVPMSTLQTI 275 Query: 275 VIQVVQKAANYGGVMVWE 222 V + K ++YGGV VW+ Sbjct: 276 VPSLASKYSSYGGVSVWD 293
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 32.3 bits (72), Expect = 0.55 Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = -3 Query: 434 IFVRFYDDADCAANWQRQWDKW------TAAYPSAQIYLGLPASEQKV--GYVHPKNLYY 279 +F++FY++ + WD W + + ++++G+PAS + GY P + Sbjct: 210 VFIQFYNNYCNLGSSSFNWDTWLNYAETDSPNKNIKLFVGVPASSRAAGSGYNDPSAVSQ 269 Query: 278 GVIQVVQKAANYGGVMVWE 222 + + + +GG+ +W+ Sbjct: 270 YLTSDILNSKYFGGISMWD 288
>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)| Length = 540 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Frame = -3 Query: 428 VRFYDDADCAANWQR----QWDKW---TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 V+FY++ C+A WD W T+ + +I +P S G YV L Sbjct: 217 VQFYNNY-CSATGSSFNFDTWDNWAKTTSPNKNVKIMFTIPGSPTAAGSGYVPMSTLQTI 275 Query: 275 VIQVVQKAANYGGVMVWE 222 V + + ++YGGV VW+ Sbjct: 276 VPSLASEYSSYGGVSVWD 293
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.4 bits (67), Expect = 2.1 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Frame = -2 Query: 432 LCQVXXXXXXXRQLAEAVGQVDGGVSVGADLPRAAGVRAEGRL---RSSKEPLLRRHTGG 262 LC L +A + GG + G + R A R+ RSS P RR GG Sbjct: 984 LCTDSLPETDDSLLCDAGTAISGGKAEG-EKGRRRSSPARSRIKQGRSSSFPGRRRPRGG 1042 Query: 261 AEGGQLWRGHGLGTLRGQADKLQQL 187 A GG RG G L+ A ++ L Sbjct: 1043 AHGG---RGRGRARLKSTASSIETL 1064
>HIS8_GEOMG (Q39YP6) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 350 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 326 ASEQKVGYVHPKNLYYGVIQVVQKA 252 A +++GYVHP YYG + VQ A Sbjct: 102 AEGEEIGYVHPSYSYYGTLAEVQGA 126
>VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI)| Length = 623 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 296 PKNLYYGVIQVVQKAANYGGVMVWE-RYEDKRTNYSSYAIQW 174 P + GV++V++ Y GV +W R D + Y+++ + W Sbjct: 278 PPEIEPGVLKVLRTEKQYLGVYIWNMRGSDGTSTYATFLVTW 319
>Y590_METJA (Q58010) Hypothetical protein MJ0590| Length = 704 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 392 WQRQWDKWTAAYPSAQIYLGLPASEQKVGYVHPKNL 285 W R ++ +YP + +G +E KVGY KNL Sbjct: 2 WGRDYELKYISYPKSVAIIGASKTEGKVGYAIMKNL 37
>FLGE_CAUCR (P35806) Flagellar hook protein flgE| Length = 591 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 311 PSALTPAARGRSAPTDTPPSTCPTASASW 397 P+A+T + G APT TPP+ P +W Sbjct: 404 PTAITIKSSGYIAPTVTPPAVQPPTPPTW 432
>WDR50_DROME (Q9V7P1) Hypothetical WD-repeat protein l(2)k07824| Length = 506 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 365 AAYPSAQIYLGLPASEQKVGYV 300 A +PSA +Y PA +KVG+V Sbjct: 453 AHFPSATVYSNFPAQNEKVGFV 474
>SYA_STAES (Q8CSA7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 381 VGQVDGGVSVGADLPRAAGVRAE-GRLRSSKEPLLRRHTGGAEGGQLWRGHGLGT 220 VGQVDG VSV A +P++ + + G L + P++ GG GG+ G GT Sbjct: 807 VGQVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII----GGKGGGRPDMAQGGGT 857
>SYA_STAEQ (Q5HNT2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 381 VGQVDGGVSVGADLPRAAGVRAE-GRLRSSKEPLLRRHTGGAEGGQLWRGHGLGT 220 VGQVDG VSV A +P++ + + G L + P++ GG GG+ G GT Sbjct: 807 VGQVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII----GGKGGGRPDMAQGGGT 857
>FIMC_BORPE (P33410) Outer membrane usher protein fimC precursor| Length = 873 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 298 IQRTSTTASYRWCRRRPTMAGSWSGNVTRTSGQIT 194 +QR T+A Y + GSWSG SGQ+T Sbjct: 620 VQRAGTSAQY-------ALNGSWSGTYGEVSGQLT 647 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,909,272 Number of Sequences: 219361 Number of extensions: 1074560 Number of successful extensions: 4200 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4183 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
