ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29e12 |
|---|---|
| Clone Library Name | barley_pub |
>MALF_SALTY (P26467) Maltose transport system permease protein malF| Length = 514 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +1 Query: 127 AVPSFQSC-IYK*LIHAEHKVTPSRLSNCLGALPIWIGEPNCLGAL----RTWITEP 282 AVPSF S I+K L + LS G P W +PN A+ TW+ P Sbjct: 326 AVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPNTARAMVIIVNTWLGYP 382
>MALF_SALTI (Q8Z1U2) Maltose transport system permease protein malF| Length = 514 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +1 Query: 127 AVPSFQSC-IYK*LIHAEHKVTPSRLSNCLGALPIWIGEPNCLGAL----RTWITEP 282 AVPSF S I+K L + LS G P W +PN A+ TW+ P Sbjct: 326 AVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPNTARAMVIIVNTWLGYP 382
>PAX6_DROME (O18381) Paired box protein Pax-6 (Protein eyeless)| Length = 857 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Frame = +1 Query: 97 STSNCGSKKVAVPSFQSCIYK*L--IHAEHKVTPSRLSNCLGALPIWIGEPNCLGALRTW 270 S+ + G+ S Q IY+ L ++ +H P L A P+ PN LG T Sbjct: 242 SSESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAA-PLVGQSPNHLG---TR 297 Query: 271 ITEPQTPSSMHARNSQHSRSSW 336 + PQ H QH + SW Sbjct: 298 SSHPQLVHGNHQALQQHQQQSW 319
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -1 Query: 380 GPEGFEQDTARTGENQEDLEC*LFRACMLLGVCGSVIHVRSAPRQFGSPIHMGNAP 213 G G E + R G++ LE FR +LG+ +++R AP Q GSP H P Sbjct: 471 GGRGGEAEGGRPGDST--LEERTFR---ILGLPAPEVNLRDAPTQPGSPEHQALGP 521
>ADEN_ADEO7 (Q83906) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa| protein) Length = 201 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 334 KKT*NADCFVRACCSVFVVP*SMCVVPLDSSVPRSIWVMPPDSYSTYSVLPCAPHVL 164 + T + C C +F + C +V +S W+ + ST S++PC PH+L Sbjct: 109 RNTQSVQCTCAGSCGLFCIFFLYCFHFYKQNVFKS-WLFQKLNGSTPSLIPCEPHLL 164
>ALG10_NEUCR (Q7SA35) Alpha-1,2 glucosyltransferase alg-10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +1 Query: 241 PNCLGALRTWITEPQTPSSMHARNSQHSRSSWFSPVLAVSCSKPS 375 P L L IT +TP+ H RSSW +++ K S Sbjct: 376 PRVLSTLADLITHARTPTPSHTTTKDPGRSSWRFTKPSITSKKSS 420
>KRA34_SHEEP (P02445) Keratin, high sulfur matrix protein, IIIB4| Length = 98 Score = 27.7 bits (60), Expect = 7.0 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 19/89 (21%) Frame = -2 Query: 313 CFVRACCSVFVVP*SM---------CVVPLDSSVPRSIWVMPPDSYSTYSVLPC---APH 170 C R CCSV P + C V L S+ P ++W + P PC P Sbjct: 2 CCARLCCSVPTSPATTICSSDKFCRCGVCLPSTCPHTVWFLQPTCCCDNRPPPCHIPQPS 61 Query: 169 VLAICICNS-------ENLELLPFYCRSC 104 V + NS E++ L + SC Sbjct: 62 VPTCFLLNSSQPTPGLESINLTTYTQPSC 90
>DFA3_SYNY3 (P74373) Putative diflavin flavoprotein A 3 (EC 1.-.-.-)| Length = 597 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -1 Query: 263 RSAPRQFGSPIHMGNAPRQLLNLLGVTLCSA 171 +SA FGSP G+AP + LG+TL +A Sbjct: 331 KSAGFIFGSPTLGGHAPTPIQTALGITLANA 361
>UL33_MCMVS (Q83207) G-protein coupled receptor homolog M33| Length = 377 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 18/90 (20%) Frame = +1 Query: 88 GQVSTSNCGSKKVAVPSFQSCI-------------YK*LIHAEHKVTPSRLSNCLGALP- 225 GQ+S+S G K VAV + SC Y+ + + +K G L Sbjct: 97 GQISSSPEGCKLVAVTYYASCTAGFSTLALISVNRYRVIHQSTNKNAAGSKKKTYGVLAL 156 Query: 226 IWIGEPNCLGALRTWIT----EPQTPSSMH 303 +W+ C T++T + TP S+H Sbjct: 157 VWLTSLMCASPAPTYVTVLAHDGDTPDSVH 186
>SYL_THETN (Q8RCT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 118 YCRSCL*ILALSLVCMLGRCVSCGCSVRNENPAEWMF 8 +C SC +LA V + G+C CG V + +W F Sbjct: 159 WCPSCQTVLANEQV-IDGKCERCGTEVTKKELTQWFF 194
>ATPG_SHIFL (P0ABA9) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 224 PYGSGNRTV*GHYAHGSRNHKH 289 PY R V GH AHG+ +KH Sbjct: 44 PYAETMRKVIGHLAHGNLEYKH 65
>ATPG_ECOLI (P0ABA6) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 224 PYGSGNRTV*GHYAHGSRNHKH 289 PY R V GH AHG+ +KH Sbjct: 44 PYAETMRKVIGHLAHGNLEYKH 65
>ATPG_ECOL6 (P0ABA7) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 224 PYGSGNRTV*GHYAHGSRNHKH 289 PY R V GH AHG+ +KH Sbjct: 44 PYAETMRKVIGHLAHGNLEYKH 65
>ATPG_ECO57 (P0ABA8) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 287 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 224 PYGSGNRTV*GHYAHGSRNHKH 289 PY R V GH AHG+ +KH Sbjct: 44 PYAETMRKVIGHLAHGNLEYKH 65
>NELL1_RAT (Q62919) Protein kinase C-binding protein NELL1 precursor (NEL-like| protein 1) Length = 810 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 132 NCYLFTAAVACRYLPCPLCVCSADVFRVDV 43 NC + AV CR + CP CS D V + Sbjct: 294 NCTCKSGAVECRRMSCPPLNCSPDSLPVHI 323
>NELL1_HUMAN (Q92832) Protein kinase C-binding protein NELL1 precursor (NEL-like| protein 1) (Nel-related protein 1) Length = 810 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 132 NCYLFTAAVACRYLPCPLCVCSADVFRVDV 43 NC + AV CR + CP CS D V + Sbjct: 294 NCTCKSGAVECRRMSCPPLNCSPDSLPVHI 323
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 216 GITHMDRGTELSRGTTHMDHGTTNTEQHA 302 G TH+ TE S GT+H TT T QH+ Sbjct: 2752 GTTHI---TEPSTGTSHTPAATTGTTQHS 2777 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 216 GITHMDRGTELSRGTTHMDHGTTNTEQHA 302 G TH+ TE S GT+H TT T QH+ Sbjct: 2223 GTTHI---TEPSTGTSHTPAATTGTTQHS 2248
>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1798 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/61 (24%), Positives = 25/61 (40%) Frame = +1 Query: 40 QNIHTKHICRAYTQGTGQVSTSNCGSKKVAVPSFQSCIYK*LIHAEHKVTPSRLSNCLGA 219 Q++HT+ + +G TS+C +K LI + +PSR + G Sbjct: 1620 QHLHTQALTALSPSTSGLTPTSSCSPPSSTSGKLSMWSWKSLIEGPDRASPSRKATMAGG 1679 Query: 220 L 222 L Sbjct: 1680 L 1680
>K6PF_THEMA (Q9WY52) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 163 LIHAEHKVT----PSRLSNCLGALPIWIGEPNCLGALRTWITEPQTPSSMHAR 309 L++ EHK+ P+ + N +G + IG CL + + + + +S H R Sbjct: 111 LLYEEHKIPVVGIPATIDNDIGLTDMCIGVDTCLNTVMDAVQKLKDTASSHER 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,017,513 Number of Sequences: 219361 Number of extensions: 1322131 Number of successful extensions: 3355 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
