ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29e10 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 90.1 bits (222), Expect = 2e-18 Identities = 41/47 (87%), Positives = 45/47 (95%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPLDGWLKDMPAVA 282 +D+MQKPAFVFDGRN+VD +KLREIGFIVYSIGKPLD WLKDMPAVA Sbjct: 434 FDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 49.3 bits (116), Expect = 4e-06 Identities = 20/34 (58%), Positives = 28/34 (82%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVDFEKLREIGFIVYSIGK 321 Y SM KPA++FDGR ++D E+L++IGF V +IGK Sbjct: 426 YQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPLD 312 ++ MQ PA +FDGR ++D + LREIGF ++IG D Sbjct: 434 HNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 38.5 bits (88), Expect = 0.006 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -2 Query: 416 SMQKPAFVFDGRNVVDFEKLREIGFIVYSIGK 321 ++ K VFDGRN++D EK++++GF Y +G+ Sbjct: 864 NLVKEKVVFDGRNILDVEKIKKLGFKYYGVGR 895
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 37.0 bits (84), Expect = 0.019 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVD--FEKLREIGFIVYSIGK 321 + M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 429 HKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 37.0 bits (84), Expect = 0.019 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVD--FEKLREIGFIVYSIGK 321 + M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 429 HKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 37.0 bits (84), Expect = 0.019 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVD--FEKLREIGFIVYSIGK 321 + M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 429 HKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 36.6 bits (83), Expect = 0.025 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%) Frame = -2 Query: 413 MQKPAFVFDGRNVVD--FEKLREIGFIVYSIGK 321 M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 432 MLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 32.7 bits (73), Expect = 0.36 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = -2 Query: 416 SMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKP 318 ++ K + DGRN+ E+++ G+I +SIG+P Sbjct: 400 TLLKQPVIIDGRNLFSLEEMQAAGYIYHSIGRP 432
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 422 YDSMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPL 315 YD ++ P + D RN++D E +++IGF Y++G + Sbjct: 398 YDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 31.6 bits (70), Expect = 0.79 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -2 Query: 416 SMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPLDGWLK 300 SM+ P V DGRN+ ++ E+GFI IG+P G K Sbjct: 412 SMRTPLLV-DGRNLYAPARMAELGFIYQGIGRPRAGHCK 449
>ARGD_VIBPA (Q87L20) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 403 Score = 30.4 bits (67), Expect = 1.8 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Frame = +3 Query: 210 AESL*IAAHGFTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVNNESNFPELL-----KVN 374 AE L + HG T GG+P + V + V +P V LA + E+ F L K N Sbjct: 272 AEHLKVGTHGSTYGGNPLACAVAEAVVNEVTKPEV--LAGVLEREALFRAGLEKINAKYN 329 Query: 375 NIAAIKNKGRLLHAVI 422 + ++ KG LL A + Sbjct: 330 LFSEVRGKGLLLGAAL 345
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 29.6 bits (65), Expect = 3.0 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -2 Query: 416 SMQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPL 315 ++ K + D RN++D E +++IGF Y++G + Sbjct: 401 NLVKSPMIIDLRNILDNEVMKKIGFRYYAVGSQI 434
>GR05A_DROME (Q9W497) Gustatory receptor for trehalose (Trehalose receptor)| Length = 444 Score = 28.9 bits (63), Expect = 5.1 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%) Frame = -1 Query: 348 WIHCLLHWQATRRLAQGHACCGLNKL**REEIRLG*IHEQLSIGIQLVISLYSCCLS--- 178 W + HW A R G+ CC L + R RL +L + LV+SL LS Sbjct: 146 WPGLMRHWAAVERRLPGYTCC-LQRA--RPARRL-----KLVAFVLLVVSLMEHLLSIIS 197 Query: 177 ------CARKSDVIFFF----SLSVFSGFTVLEWHGTLG 91 C R+SD + + S +F F W LG Sbjct: 198 VVYYDFCPRRSDPVESYLLGASAQLFEVFPYSNWLAWLG 236
>ARGD_VIBVY (Q7MH19) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 403 Score = 28.5 bits (62), Expect = 6.7 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = +3 Query: 210 AESL*IAAHGFTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVNNESNFPE-LLKVNN--- 377 AE L + HG T GG+P + V + V +P E L E F E L K+N Sbjct: 272 AEHLKVGTHGSTYGGNPLACAVAEAVVTEVSKP--ETLQGVKEREQWFREGLAKLNEKYQ 329 Query: 378 -IAAIKNKGRLLHAVI 422 A I+ KG LL A + Sbjct: 330 IFAEIRGKGLLLGAAL 345
>ARGD_VIBVU (P59323) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 403 Score = 28.5 bits (62), Expect = 6.7 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = +3 Query: 210 AESL*IAAHGFTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVNNESNFPE-LLKVNN--- 377 AE L + HG T GG+P + V + V +P E L E F E L K+N Sbjct: 272 AEHLKVGTHGSTYGGNPLACAVAEAVVTEVSKP--ETLQGVKEREQWFREGLAKLNEKYQ 329 Query: 378 -IAAIKNKGRLLHAVI 422 A I+ KG LL A + Sbjct: 330 IFAEIRGKGLLLGAAL 345
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 413 MQKPAFVFDGRNVVDFEKLREIGFIVYSIGKPLD 312 +Q F+ NV D E+LRE+ +Y +GK +D Sbjct: 709 IQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,051,440 Number of Sequences: 219361 Number of extensions: 1109591 Number of successful extensions: 2648 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2648 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
