ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNAJ_VIBF1 (Q5E3A8) Chaperone protein dnaJ 28 5.6
2YAB9_SCHPO (Q09809) Hypothetical protein C2G11.09 in chromosome I 28 7.4

>DNAJ_VIBF1 (Q5E3A8) Chaperone protein dnaJ|
          Length = 379

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 166 ASAPMSVLFGENLSQLINKHFFYLRRACPTAFLFAQIIF*FCNSCY 29
           +S   S   G+   Q+  + FF +++ACPT     +II   CNSC+
Sbjct: 160 SSTTCSTCHGQGQVQM-RQGFFAVQQACPTCHGKGKIIKDPCNSCH 204



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>YAB9_SCHPO (Q09809) Hypothetical protein C2G11.09 in chromosome I|
          Length = 796

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 253 DFRLSFWLL*SSRPGYCYFE*TISFRWFAASAPMSVLFGENLSQLINKHFFYL 95
           D R  FWL        C F      RW    AP + + G NL  L + ++ +L
Sbjct: 23  DLRTQFWLAFLLGASACVFFCFFRKRWKVLYAPRTTIEGLNLPTLSSSYYKWL 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,596,723
Number of Sequences: 219361
Number of extensions: 640690
Number of successful extensions: 1417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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