ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29e03 |
|---|---|
| Clone Library Name | barley_pub |
>INP4A_HUMAN (Q96PE3) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 977 Score = 31.2 bits (69), Expect = 1.1 Identities = 28/91 (30%), Positives = 45/91 (49%) Frame = +2 Query: 86 DVIMAAL*GQWTRGWPVRACLYLDWRVQQWSMVQLATVLHRSVQTTIGVQPLNVLILYA* 265 D +MA +WT G R+ L +DW ++W V L + +S++ I Q ++ L+ Sbjct: 503 DTLMA----RWT-GRNSRSSLQVDWHEEEWEKVWLN--VDKSLECII--QRVDKLLQKER 553 Query: 266 LHADGRRGDMRPCRLGSWASQDSRPVASPSW 358 LH +G D+ PC GS S+ P + W Sbjct: 554 LHGEGCE-DVFPC-AGSCTSKKGNPDSHAYW 582
>RDRP_BSNV (Q8AZL8) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 867 Score = 30.8 bits (68), Expect = 1.5 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -1 Query: 99 AIITSISAKPSALFYFLLQDNSRLYLVLDWFSV 1 A++T+I A+P + + DN +Y+ WFS+ Sbjct: 372 AVVTNILAQPDETLFLIYADNIYIYMDRTWFSI 404
>ATG4_MAGGR (Q523C3) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related| protein 4) Length = 572 Score = 30.8 bits (68), Expect = 1.5 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%) Frame = -2 Query: 407 RPSSSSTFQSRNRR-------------HHTKMERPLVVSPDLPRSPGDMDACHRDVRQRV 267 RPSSS F R HHT+ P P L +P D+D+CH +R+ Sbjct: 441 RPSSSHYFVGAQRSDEDQGSYLFYLDPHHTRPALPFHEDPQL-YTPSDVDSCHTRRLRRL 499 Query: 266 AMHKVSERLMVVRQLLSE 213 + ++ +++ +L E Sbjct: 500 HIREMDPSMLIGFLILDE 517
>PDXH_MYCTU (P65682) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 224 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = +2 Query: 293 MRP--CRLGSWASQDSRPVASPSWYD 364 MRP +LG+WASQ SRPV S + D Sbjct: 141 MRPRGAQLGAWASQQSRPVGSRAQLD 166
>PDXH_MYCBO (P65683) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 224 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = +2 Query: 293 MRP--CRLGSWASQDSRPVASPSWYD 364 MRP +LG+WASQ SRPV S + D Sbjct: 141 MRPRGAQLGAWASQQSRPVGSRAQLD 166
>PDXH_MYCPA (Q742K7) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 220 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +2 Query: 296 RPCRLGSWASQDSRPVAS 349 R +LG+WASQ SRP+AS Sbjct: 140 RGSQLGAWASQQSRPIAS 157
>SP100_MUSCR (O35893) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) Length = 482 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -2 Query: 401 SSSSTFQSRNRRHHTKMERPLVVSPDLPRSPGDMDACHRDVR 276 SSS ++S +RR+ M+ + L SPG +D+C V+ Sbjct: 161 SSSEGWRSNDRRNSNLMQANQTENHQLAESPGHLDSCELQVQ 202
>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1| (EC 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -2 Query: 290 HRDVRQRVAMHKVSERLMVVRQLLSELTCVKPLL 189 HRD RQR AM K++++ +++R + + + +L Sbjct: 395 HRDTRQRFAMKKINKQNLILRNQIQQAFVERDIL 428
>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1| (EC 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -2 Query: 290 HRDVRQRVAMHKVSERLMVVRQLLSELTCVKPLL 189 HRD RQR AM K++++ +++R + + + +L Sbjct: 393 HRDTRQRFAMKKINKQNLILRNQIQQAFVERDIL 426
>MAST1_MOUSE (Q9R1L5) Microtubule-associated serine/threonine-protein kinase 1| (EC 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1566 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -2 Query: 290 HRDVRQRVAMHKVSERLMVVRQLLSELTCVKPLL 189 HRD RQR AM K++++ +++R + + + +L Sbjct: 394 HRDTRQRFAMKKINKQNLILRNQIQQAFVERDIL 427
>SDCG1_HUMAN (O60524) Serologically defined colon cancer antigen 1 (Antigen| NY-CO-1) Length = 1076 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -2 Query: 401 SSSSTFQSRNRRHHTKMERPLVVSPDLPRSPGDMDACH-RDVRQRVAMH 258 S+SS +S++RRH + ER + LP GD++A +D + +H Sbjct: 803 SNSSDSKSQSRRHLSAKERREMKKKKLPSDSGDLEALEGKDKEKESTVH 851
>PDXH_NOCFA (Q5Z236) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 225 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 284 RGDMRPCRLGSWASQDSRPVASPSWYD 364 R R +LG+WASQ SRP+ S + D Sbjct: 137 RSRPRDSQLGAWASQQSRPIDSRAALD 163
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -2 Query: 254 VSERLMVVRQLLSELTCVKPLLIVPCSTVVPASPNTSKPGRATL*SIAPTT 102 V R V+ +L++L C P VP S + T+ P RA L ++ T Sbjct: 2160 VKPRSSVLNYILNDLLCFSPASGVPESIAMKKKAATAVPARAVLVALVSKT 2210
>SP100_MOUSE (O35892) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) Length = 482 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 401 SSSSTFQSRNRRHHTKMERPLVVSPDLPRSPGDMDACHRDVR 276 S+S ++S +RR+ M+ + L SPG +D+C V+ Sbjct: 161 SASEGWRSNDRRNSNLMQANQTENHQLAESPGHLDSCELQVQ 202
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3| (EC 2.7.11.1) Length = 1309 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/34 (29%), Positives = 23/34 (67%) Frame = -2 Query: 290 HRDVRQRVAMHKVSERLMVVRQLLSELTCVKPLL 189 HRD RQR A+ K++++ +++R + ++ + +L Sbjct: 386 HRDTRQRFAIKKINKQNLILRNQIQQVFVERDIL 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,282,239 Number of Sequences: 219361 Number of extensions: 1278625 Number of successful extensions: 3495 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3495 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
