ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1) 29 5.2
2ATC3_YEAST (P39524) Probable phospholipid-transporting ATPase DR... 28 6.7
3PP2CD_MOUSE (Q9QZ67) Protein phosphatase 2C isoform delta (EC 3.... 28 6.7
4MEAA_METEX (Q49115) Protein meaA 28 6.7
5K0406_MOUSE (Q91V83) Protein KIAA0406 homolog 28 6.7
6PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6... 28 8.8
7K0406_HUMAN (O43156) Protein KIAA0406 28 8.8
8NEUR2_HUMAN (Q9Y3R4) Sialidase-2 (EC 3.2.1.18) (Cytosolic sialid... 28 8.8

>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  FRSHHQHTSSRPVHNTYAFISH 100
           + SHH H+   P+HNT ++ S+
Sbjct: 371 YNSHHHHSLHHPLHNTTSYFSN 392



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>ATC3_YEAST (P39524) Probable phospholipid-transporting ATPase DRS2 (EC|
           3.6.3.1)
          Length = 1355

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 368 VIVGSSALVPGA-DVALESIHNIREALPELWEAGGDHVEAAVGI 240
           +++G++A+     D   E+IH ++EA  ++W   GD  E A+ I
Sbjct: 802 ILIGATAIEDKLQDGVPETIHTLQEAGIKIWVLTGDRQETAINI 845



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>PP2CD_MOUSE (Q9QZ67) Protein phosphatase 2C isoform delta (EC 3.1.3.16)|
           (PP2C-delta) (p53-induced protein phosphatase 1)
           (Protein phosphatase magnesium-dependent 1 delta)
          Length = 598

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 30  RISDHTISTQVVGLYITPTHSSVITMDRGSISSSTPQHMRANIV 161
           RI D   +T  VGL   PT+S+   MD+ ++  STP  M+A  V
Sbjct: 478 RIHDSLNNTLSVGLI--PTNSTNTIMDQKNLKMSTPGQMKAQEV 519



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>MEAA_METEX (Q49115) Protein meaA|
          Length = 688

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 401 IASGKSAGFHTVIVGSSALVPGADVALESIHNIREALPELWEAGGDHVEAAVG 243
           +A  K  G H  ++G S L  G+ V L     +RE   +L EAG DHV   VG
Sbjct: 574 VAKAKERGAH--VIGLSVL-SGSHVPL-----VREVKAKLREAGLDHVPVVVG 618



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>K0406_MOUSE (Q91V83) Protein KIAA0406 homolog|
          Length = 1085

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 368 VIVGSSALVPGADVALESIHNIREALPELWEAGGD 264
           V+VGS AL   AD+  ES+H++  +LP L     D
Sbjct: 363 VVVGSRAL---ADILSESLHSLATSLPRLMNTQDD 394



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>PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)|
          Length = 226

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 419 DDSPRNIASGKSAGFHTVIVGSSALVPGADVALESIHNIR-EALPELWE 276
           +D+   I++ KSAG   V VG    + GAD+ +    ++  E L E WE
Sbjct: 169 EDAEAGISAIKSAGMFAVGVGQGQPMLGADLVVRQTSDLTLELLHEEWE 217



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>K0406_HUMAN (O43156) Protein KIAA0406|
          Length = 1089

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 368 VIVGSSALVPGADVALESIHNIREALPELWEAGGD 264
           V+VG+ AL   AD+  ES+H++  +LP L  +  D
Sbjct: 363 VVVGNKAL---ADILSESLHSLATSLPRLMNSQDD 394



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>NEUR2_HUMAN (Q9Y3R4) Sialidase-2 (EC 3.2.1.18) (Cytosolic sialidase)|
           (N-acetyl-alpha-neuraminidase 2)
          Length = 380

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 26  IPNFRSHHQHTSSRPVHNTYAFISHHHG-SWI--HIVEHTT 139
           +P +     H   RP+ + + F+SH HG +W   H V   T
Sbjct: 176 VPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDT 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,784,663
Number of Sequences: 219361
Number of extensions: 806791
Number of successful extensions: 2557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2513
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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