ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104976.1| Zea mays PCO136133 mRNA sequence 168 9e-39
2ref|NM_193122.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
4dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 1e-16
6gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str... 96 1e-16
7gb|AY224492.1| Oryza sativa (japonica cultivar-group) isolate 30... 96 1e-16
8gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
10dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
11dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
12dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
13gb|AY106832.1| Zea mays PCO074808 mRNA sequence 88 3e-14
14ref|XM_364104.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.36
15ref|XM_421985.1| PREDICTED: Gallus gallus similar to phosphodies... 44 0.36
16gb|AY121633.1| Drosophila melanogaster GM02293 full insert cDNA 44 0.36
17ref|NM_079454.2| Drosophila melanogaster Clathrin light chain CG... 44 0.36
18gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 44 0.36
19gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell... 44 0.36
20dbj|AB004563.1| Terrabacter sp. dbfB, dbfC and orfL(3, 4, 5 and ... 44 0.36
21gb|AF055900.1|AF055900 Drosophila melanogaster clathrin light ch... 44 0.36
22gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 44 0.36
23gb|BC013880.2| Homo sapiens likely ortholog of mouse membrane bo... 42 1.4
24ref|NM_015292.1| Homo sapiens family with sequence similarity 62... 42 1.4
25emb|AL050134.1|HSM800435 Homo sapiens mRNA; cDNA DKFZp586K011 (f... 42 1.4
26emb|CR859189.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1226 (from cl... 42 1.4
27emb|CR859055.1| Pongo pygmaeus mRNA; cDNA DKFZp459I1628 (from cl... 42 1.4
28dbj|AK128730.1| Homo sapiens cDNA FLJ46898 fis, clone UTERU30221... 42 1.4
29emb|CR621596.1| full-length cDNA clone CS0DN001YF19 of Adult bra... 42 1.4
30dbj|AK022790.1| Homo sapiens cDNA FLJ12728 fis, clone NT2RP20000... 42 1.4
31gb|BC004998.1| Homo sapiens family with sequence similarity 62 (... 42 1.4
32gb|AC034102.32| Homo sapiens 12 BAC RP11-603J24 (Roswell Park Ca... 42 1.4
33dbj|AK025878.1| Homo sapiens cDNA: FLJ22225 fis, clone HRC01707 42 1.4
34dbj|AK025463.1| Homo sapiens cDNA: FLJ21810 fis, clone HEP01030 42 1.4
35dbj|AK074368.1| Homo sapiens cDNA FLJ23788 fis, clone HEP21431 42 1.4
36dbj|AB018290.1| Homo sapiens mRNA for KIAA0747 protein, partial cds 42 1.4
37ref|NM_192994.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
38gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 40 5.6
39gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.6
40ref|XM_461312.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.6
41emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.6
42gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosom... 40 5.6
43ref|XM_791699.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.6
44gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.6
45emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 5.6
46dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 gen... 40 5.6
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
51dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
52dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
53dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
54dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
55dbj|AK063075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
56gb|AY105377.1| Zea mays PCO061803 mRNA sequence 40 5.6
57gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
58gb|L42322.1|RBLBADA Rhodopseudomonas palustris benzoate-coenzyme... 40 5.6 
>gb|AY104976.1| Zea mays PCO136133 mRNA sequence
          Length = 712

 Score =  168 bits (85), Expect = 9e-39
 Identities = 130/145 (89%)
 Strand = Plus / Minus

                                                                       
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgccacgtccg 334
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 373 cctcccagagctccggcagcgcctccttgatgttgtggatgctctccagcgccacgtccg 314

                                                                       
Query: 335 ccccgggcacgagcgccgagctccctacgatgacggtatggaagcctgccgattttcccg 394
           |||| ||||| |||||||||||||| |||||||||||  |||| || || |  || || |
Sbjct: 313 cccctggcaccagcgccgagctccccacgatgacggtgcggaaaccggcggccttccctg 254

                                    
Query: 395 aggcgatgttgcgcgggctgtcgtc 419
            |||||||||||||| |||||||||
Sbjct: 253 cggcgatgttgcgcgcgctgtcgtc 229
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>ref|NM_193122.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 834

 Score =  143 bits (72), Expect = 5e-31
 Identities = 144/168 (85%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggcctcgacgtggtcgccgcccgcctcccagagctccggcagcgcctccctgatgttgtg 311
           ||||| |||||| |||||| | |||||||| |||||||||| ||||||| ||||||||||
Sbjct: 771 ggcctggacgtgctcgccggcggcctcccacagctccggcaccgcctccttgatgttgtg 712

                                                                       
Query: 312 gatgctctccagcgccacgtccgccccgggcacgagcgccgagctccctacgatgacggt 371
           ||||||||||||||||||||||||||||| |||   |||||||||||| ||||| || ||
Sbjct: 711 gatgctctccagcgccacgtccgccccggccaccgccgccgagctccccacgatcaccgt 652

                                                           
Query: 372 atggaagcctgccgattttcccgaggcgatgttgcgcgggctgtcgtc 419
            ||||| || || |  || || | |||||||||||| |||||||||||
Sbjct: 651 gtggaatccggcggccttcccggcggcgatgttgcgtgggctgtcgtc 604



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 46/52 (88%), Gaps = 3/52 (5%)
 Strand = Plus / Minus

                                                               
Query: 205 gcgagcacggtggtctccgcgacggcggcggaccggatgccgacggcggcct 256
           |||||||||||||||||   |||||||||||| |||| | ||||||||||||
Sbjct: 830 gcgagcacggtggtctc---gacggcggcggagcggaggtcgacggcggcct 782
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  143 bits (72), Expect = 5e-31
 Identities = 144/168 (85%)
 Strand = Plus / Plus

                                                                            
Query: 252      ggcctcgacgtggtcgccgcccgcctcccagagctccggcagcgcctccctgatgttgtg 311
                ||||| |||||| |||||| | |||||||| |||||||||| ||||||| ||||||||||
Sbjct: 26274127 ggcctggacgtgctcgccggcggcctcccacagctccggcaccgcctccttgatgttgtg 26274186

                                                                            
Query: 312      gatgctctccagcgccacgtccgccccgggcacgagcgccgagctccctacgatgacggt 371
                ||||||||||||||||||||||||||||| |||   |||||||||||| ||||| || ||
Sbjct: 26274187 gatgctctccagcgccacgtccgccccggccaccgccgccgagctccccacgatcaccgt 26274246

                                                                
Query: 372      atggaagcctgccgattttcccgaggcgatgttgcgcgggctgtcgtc 419
                 ||||| || || |  || || | |||||||||||| |||||||||||
Sbjct: 26274247 gtggaatccggcggccttcccggcggcgatgttgcgtgggctgtcgtc 26274294



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 199      gctcacgcgagcacggtggtctccgcgacggcggcggaccggatgccgacggcggcct 256
                ||||| |||||||||||||||||   |||||||||||| |||| | ||||||||||||
Sbjct: 26274062 gctcaggcgagcacggtggtctc---gacggcggcggagcggaggtcgacggcggcct 26274116
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score =  143 bits (72), Expect = 5e-31
 Identities = 144/168 (85%)
 Strand = Plus / Plus

                                                                         
Query: 252   ggcctcgacgtggtcgccgcccgcctcccagagctccggcagcgcctccctgatgttgtg 311
             ||||| |||||| |||||| | |||||||| |||||||||| ||||||| ||||||||||
Sbjct: 48755 ggcctggacgtgctcgccggcggcctcccacagctccggcaccgcctccttgatgttgtg 48814

                                                                         
Query: 312   gatgctctccagcgccacgtccgccccgggcacgagcgccgagctccctacgatgacggt 371
             ||||||||||||||||||||||||||||| |||   |||||||||||| ||||| || ||
Sbjct: 48815 gatgctctccagcgccacgtccgccccggccaccgccgccgagctccccacgatcaccgt 48874

                                                             
Query: 372   atggaagcctgccgattttcccgaggcgatgttgcgcgggctgtcgtc 419
              ||||| || || |  || || | |||||||||||| |||||||||||
Sbjct: 48875 gtggaatccggcggccttcccggcggcgatgttgcgtgggctgtcgtc 48922



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                       
Query: 199   gctcacgcgagcacggtggtctccgcgacggcggcggaccggatgccgacggcggcct 256
             ||||| |||||||||||||||||   |||||||||||| |||| | ||||||||||||
Sbjct: 48690 gctcaggcgagcacggtggtctc---gacggcggcggagcggaggtcgacggcggcct 48744
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                   
Query: 275     cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
               ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9176552 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 9176501
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>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                  
Query: 275    cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
              ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109839 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 109890
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>gb|AY224492.1| Oryza sativa (japonica cultivar-group) isolate 30857 unknown mRNA
          Length = 492

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 185
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>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06,
              complete sequence
          Length = 119910

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                  
Query: 275    cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
              ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119732 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 119681
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                   
Query: 275     cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
               ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9174385 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 9174334
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>dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026N03, full
           insert sequence
          Length = 1378

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 888
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>dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103J23, full
           insert sequence
          Length = 1315

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 890
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>dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D05, full
           insert sequence
          Length = 1314

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 887
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>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                               
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctccagcgc 326
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 940 cctcccacagctccggcagcgcttccctgatgttgtggatgctctccagcgc 889
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>ref|XM_364104.1| Magnaporthe grisea 70-15 hypothetical protein (MG08949.4) partial
           mRNA
          Length = 1233

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 279 ccagagctccggcagcgcctccctga 304
           |||||||| |||||||||||||||||
Sbjct: 909 ccagagctgcggcagcgcctccctga 884
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>ref|XM_421985.1| PREDICTED: Gallus gallus similar to phosphodiesterase 11A
           (LOC424133), mRNA
          Length = 1788

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 243 gccgacggcggcctcgacgtgg 264
           ||||||||||||||||||||||
Sbjct: 7   gccgacggcggcctcgacgtgg 28
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>gb|AY121633.1| Drosophila melanogaster GM02293 full insert cDNA
          Length = 1142

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 221 ccgcgacggcggcggaccggat 242
           ||||||||||||||||||||||
Sbjct: 457 ccgcgacggcggcggaccggat 436
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>ref|NM_079454.2| Drosophila melanogaster Clathrin light chain CG6948-RA (Clc), mRNA
          Length = 1129

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 221 ccgcgacggcggcggaccggat 242
           ||||||||||||||||||||||
Sbjct: 491 ccgcgacggcggcggaccggat 470
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>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 221   ccgcgacggcggcggaccggat 242
             ||||||||||||||||||||||
Sbjct: 33068 ccgcgacggcggcggaccggat 33047
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>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179283

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 221    ccgcgacggcggcggaccggat 242
              ||||||||||||||||||||||
Sbjct: 172205 ccgcgacggcggcggaccggat 172184
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>dbj|AB004563.1| Terrabacter sp. dbfB, dbfC and orfL(3, 4, 5 and 6) genes involved in
            the degradation of dibenzofuran, complete cds
          Length = 8599

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 246  gacggcggcctcgacgtggtcg 267
            ||||||||||||||||||||||
Sbjct: 3455 gacggcggcctcgacgtggtcg 3434
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>gb|AF055900.1|AF055900 Drosophila melanogaster clathrin light chain mRNA, complete cds
          Length = 1098

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 221 ccgcgacggcggcggaccggat 242
           ||||||||||||||||||||||
Sbjct: 439 ccgcgacggcggcggaccggat 418
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>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 221    ccgcgacggcggcggaccggat 242
              ||||||||||||||||||||||
Sbjct: 215222 ccgcgacggcggcggaccggat 215201
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>gb|BC013880.2| Homo sapiens likely ortholog of mouse membrane bound C2 domain
            containing protein, mRNA (cDNA clone MGC:10591
            IMAGE:3832326), complete cds
          Length = 4179

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2893 cccagagctccggcagcgcct 2913
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>ref|NM_015292.1| Homo sapiens family with sequence similarity 62 (C2 domain
            containing), member A (FAM62A), mRNA
          Length = 4190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2903 cccagagctccggcagcgcct 2923
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>emb|AL050134.1|HSM800435 Homo sapiens mRNA; cDNA DKFZp586K011 (from clone DKFZp586K011)
          Length = 3009

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 1719 cccagagctccggcagcgcct 1739
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>emb|CR859189.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1226 (from clone DKFZp459B1226)
          Length = 4215

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2922 cccagagctccggcagcgcct 2942
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>emb|CR859055.1| Pongo pygmaeus mRNA; cDNA DKFZp459I1628 (from clone DKFZp459I1628)
          Length = 4217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2929 cccagagctccggcagcgcct 2949
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>dbj|AK128730.1| Homo sapiens cDNA FLJ46898 fis, clone UTERU3022168, moderately
            similar to Rattus norvegicus membrane bound C2 domain
            containing protein (Mbc2)
          Length = 4047

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2775 cccagagctccggcagcgcct 2795
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>emb|CR621596.1| full-length cDNA clone CS0DN001YF19 of Adult brain of Homo sapiens
           (human)
          Length = 1954

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 278 cccagagctccggcagcgcct 298
           |||||||||||||||||||||
Sbjct: 715 cccagagctccggcagcgcct 735
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>dbj|AK022790.1| Homo sapiens cDNA FLJ12728 fis, clone NT2RP2000040, highly similar to
            Homo sapiens mRNA for KIAA0747 protein
          Length = 4190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2922 cccagagctccggcagcgcct 2942
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>gb|BC004998.1| Homo sapiens family with sequence similarity 62 (C2 domain
            containing), member A, mRNA (cDNA clone MGC:4422
            IMAGE:2958094), complete cds
          Length = 4190

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2903 cccagagctccggcagcgcct 2923
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>gb|AC034102.32| Homo sapiens 12 BAC RP11-603J24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 192203

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 278   cccagagctccggcagcgcct 298
             |||||||||||||||||||||
Sbjct: 18602 cccagagctccggcagcgcct 18582
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>dbj|AK025878.1| Homo sapiens cDNA: FLJ22225 fis, clone HRC01707
          Length = 1953

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 278 cccagagctccggcagcgcct 298
           |||||||||||||||||||||
Sbjct: 663 cccagagctccggcagcgcct 683
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>dbj|AK025463.1| Homo sapiens cDNA: FLJ21810 fis, clone HEP01030
          Length = 3487

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2176 cccagagctccggcagcgcct 2196
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>dbj|AK074368.1| Homo sapiens cDNA FLJ23788 fis, clone HEP21431
          Length = 2786

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 1499 cccagagctccggcagcgcct 1519
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>dbj|AB018290.1| Homo sapiens mRNA for KIAA0747 protein, partial cds
          Length = 4026

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cccagagctccggcagcgcct 298
            |||||||||||||||||||||
Sbjct: 2758 cccagagctccggcagcgcct 2778
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>ref|NM_192994.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 gacggcggcctcgacgtggt 265
           ||||||||||||||||||||
Sbjct: 196 gacggcggcctcgacgtggt 215
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08
              map E1363S, complete sequence
          Length = 140681

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     acgcattcatcagtcatcac 103
              ||||||||||||||||||||
Sbjct: 136550 acgcattcatcagtcatcac 136531
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    gatgccgacggcggcctcga 259
              ||||||||||||||||||||
Sbjct: 123193 gatgccgacggcggcctcga 123212
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>ref|XM_461312.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F23683g)
           partial mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  cctacgcattcatcagtcat 100
           ||||||||||||||||||||
Sbjct: 431 cctacgcattcatcagtcat 450
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     gatgccgacggcggcctcga 259
               ||||||||||||||||||||
Sbjct: 1099993 gatgccgacggcggcctcga 1099974
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>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete
             sequence
          Length = 183551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   agcatatgagggctaatata 158
             ||||||||||||||||||||
Sbjct: 59026 agcatatgagggctaatata 59045
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>ref|XM_791699.1| PREDICTED: Strongylocentrotus purpuratus similar to CG1486-PA,
            isoform A (LOC592163), mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  tacgatgacggtatggaagc 379
            ||||||||||||||||||||
Sbjct: 1555 tacgatgacggtatggaagc 1574



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  tacgatgacggtatggaagc 379
            ||||||||||||||||||||
Sbjct: 1306 tacgatgacggtatggaagc 1325
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     cggcggcctcgacgtggtcg 267
               ||||||||||||||||||||
Sbjct: 2148455 cggcggcctcgacgtggtcg 2148436
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      cctacgcattcatcagtcat 100
               ||||||||||||||||||||
Sbjct: 1881485 cctacgcattcatcagtcat 1881504
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 84       acgcattcatcagtcatcac 103
                ||||||||||||||||||||
Sbjct: 19875512 acgcattcatcagtcatcac 19875493
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      ggtctccgcgacggcggcgg 235
                ||||||||||||||||||||
Sbjct: 29811406 ggtctccgcgacggcggcgg 29811387
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 246      gacggcggcctcgacgtggt 265
                ||||||||||||||||||||
Sbjct: 22463183 gacggcggcctcgacgtggt 22463202
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>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete
              sequence
          Length = 116932

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     acgcattcatcagtcatcac 103
              ||||||||||||||||||||
Sbjct: 110531 acgcattcatcagtcatcac 110550
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 251    cggcctcgacgtggtcgccgcccgcctc 278
              |||||| |||| ||||||||||||||||
Sbjct: 318907 cggccttgacgaggtcgccgcccgcctc 318934
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   ggtctccgcgacggcggcgg 235
             ||||||||||||||||||||
Sbjct: 67751 ggtctccgcgacggcggcgg 67732
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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672C09
          Length = 145655

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   gacggcggcctcgacgtggt 265
             ||||||||||||||||||||
Sbjct: 87321 gacggcggcctcgacgtggt 87340
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>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0013G02
          Length = 163419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    gacggcggcctcgacgtggt 265
              ||||||||||||||||||||
Sbjct: 160453 gacggcggcctcgacgtggt 160472
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>dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full
           insert sequence
          Length = 3186

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 gacggcggcctcgacgtggt 265
           ||||||||||||||||||||
Sbjct: 309 gacggcggcctcgacgtggt 328
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>dbj|AK063075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H08, full
           insert sequence
          Length = 667

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 ggtctccgcgacggcggcgg 235
           ||||||||||||||||||||
Sbjct: 24  ggtctccgcgacggcggcgg 5
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>gb|AY105377.1| Zea mays PCO061803 mRNA sequence
          Length = 679

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 275 cctcccagagctccggcagcgcctccctgatgttgtggatgctctcca 322
           ||||||| ||||||||||| || ||| | |||||||||| ||| ||||
Sbjct: 478 cctcccacagctccggcagtgcttccttcatgttgtggaggctttcca 431
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 84       acgcattcatcagtcatcac 103
                ||||||||||||||||||||
Sbjct: 19886788 acgcattcatcagtcatcac 19886769
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>gb|L42322.1|RBLBADA Rhodopseudomonas palustris benzoate-coenzyme A ligase (badA) gene,
            complete cds
          Length = 1601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 223  gcgacggcggcggaccggatgccgacgg 250
            ||||||||||||||||||  ||||||||
Sbjct: 1091 gcgacggcggcggaccggtcgccgacgg 1118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,588,204
Number of Sequences: 3902068
Number of extensions: 2588204
Number of successful extensions: 52400
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51493
Number of HSP's gapped (non-prelim): 901
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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