Clone Name | rbart29d09 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192048.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 297 bits (150), Expect = 2e-77 Identities = 267/306 (87%) Strand = Plus / Minus Query: 214 tgttgtttttccaccttgtccacacgaggacttcgagggtgatgatagtgatcagaagga 273 |||||||||||||||||||||| | ||||| || |||||||| || |||||||| |||| Sbjct: 1093 tgttgtttttccaccttgtccatagcaggacctccagggtgataatggtgatcaggagga 1034 Query: 274 tggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgattc 333 ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||| Sbjct: 1033 tggccaggttgaagccatagccgatcttccacgagttgccggcggctccgaccttgattc 974 Query: 334 ccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgatacc 393 | | |||||||| | || ||||||||||| |||||||||||||||||||||| |||| Sbjct: 973 caaggacaatgttgatggctgcaaagaagagcgcaagcctgcctacccaatggtggtacc 914 Query: 394 agttccagtatttccggtacttcgagtctttgttgggccgtaggaagaatgcaagaacct 453 |||||||||||||||| || || ||||| |||| |||| ||||||||| || |||| || Sbjct: 913 agttccagtatttccgatattttgagtccttgtgaggccttaggaagaaggccagaatct 854 Query: 454 ggaggatacctagcacaagcacaaatatgccaaggcctctatgtgccggaacatctgctt 513 | |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 853 gcaggatacccagcacaagcacaaatatgccaaggcccctatgcgccgggacatctgctt 794 Query: 514 ggatct 519 |||||| Sbjct: 793 ggatct 788
>dbj|AK069379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H09, full insert sequence Length = 1419 Score = 297 bits (150), Expect = 2e-77 Identities = 267/306 (87%) Strand = Plus / Minus Query: 214 tgttgtttttccaccttgtccacacgaggacttcgagggtgatgatagtgatcagaagga 273 |||||||||||||||||||||| | ||||| || |||||||| || |||||||| |||| Sbjct: 1081 tgttgtttttccaccttgtccatagcaggacctccagggtgataatggtgatcaggagga 1022 Query: 274 tggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgattc 333 ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||| Sbjct: 1021 tggccaggttgaagccatagccgatcttccacgagttgccggcggctccgaccttgattc 962 Query: 334 ccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgatacc 393 | | |||||||| | || ||||||||||| |||||||||||||||||||||| |||| Sbjct: 961 caaggacaatgttgatggctgcaaagaagagcgcaagcctgcctacccaatggtggtacc 902 Query: 394 agttccagtatttccggtacttcgagtctttgttgggccgtaggaagaatgcaagaacct 453 |||||||||||||||| || || ||||| |||| |||| ||||||||| || |||| || Sbjct: 901 agttccagtatttccgatattttgagtccttgtgaggccttaggaagaaggccagaatct 842 Query: 454 ggaggatacctagcacaagcacaaatatgccaaggcctctatgtgccggaacatctgctt 513 | |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 841 gcaggatacccagcacaagcacaaatatgccaaggcccctatgcgccgggacatctgctt 782 Query: 514 ggatct 519 |||||| Sbjct: 781 ggatct 776
>dbj|AK060690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C01, full insert sequence Length = 1594 Score = 297 bits (150), Expect = 2e-77 Identities = 267/306 (87%) Strand = Plus / Minus Query: 214 tgttgtttttccaccttgtccacacgaggacttcgagggtgatgatagtgatcagaagga 273 |||||||||||||||||||||| | ||||| || |||||||| || |||||||| |||| Sbjct: 1302 tgttgtttttccaccttgtccatagcaggacctccagggtgataatggtgatcaggagga 1243 Query: 274 tggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgattc 333 ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||| Sbjct: 1242 tggccaggttgaagccatagccgatcttccacgagttgccggcggctccgaccttgattc 1183 Query: 334 ccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgatacc 393 | | |||||||| | || ||||||||||| |||||||||||||||||||||| |||| Sbjct: 1182 caaggacaatgttgatggctgcaaagaagagcgcaagcctgcctacccaatggtggtacc 1123 Query: 394 agttccagtatttccggtacttcgagtctttgttgggccgtaggaagaatgcaagaacct 453 |||||||||||||||| || || ||||| |||| |||| ||||||||| || |||| || Sbjct: 1122 agttccagtatttccgatattttgagtccttgtgaggccttaggaagaaggccagaatct 1063 Query: 454 ggaggatacctagcacaagcacaaatatgccaaggcctctatgtgccggaacatctgctt 513 | |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 1062 gcaggatacccagcacaagcacaaatatgccaaggcccctatgcgccgggacatctgctt 1003 Query: 514 ggatct 519 |||||| Sbjct: 1002 ggatct 997
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 208 bits (105), Expect = 1e-50 Identities = 198/229 (86%) Strand = Plus / Plus Query: 214 tgttgtttttccaccttgtccacacgaggacttcgagggtgatgatagtgatcagaagga 273 |||||||||||||||||||||| | ||||| || |||||||| || |||||||| |||| Sbjct: 28022343 tgttgtttttccaccttgtccatagcaggacctccagggtgataatggtgatcaggagga 28022402 Query: 274 tggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgattc 333 ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||| Sbjct: 28022403 tggccaggttgaagccatagccgatcttccacgagttgccggcggctccgaccttgattc 28022462 Query: 334 ccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgatacc 393 | | |||||||| | || ||||||||||| |||||||||||||||||||||| |||| Sbjct: 28022463 caaggacaatgttgatggctgcaaagaagagcgcaagcctgcctacccaatggtggtacc 28022522 Query: 394 agttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 |||||||||||||||| || || ||||| |||| |||| ||||||||| Sbjct: 28022523 agttccagtatttccgatattttgagtccttgtgaggccttaggaagaa 28022571 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 450 acctggaggatacctagcacaagcacaaatatgccaaggcctctatgtgccggaacatct 509 ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 28023230 acctgcaggatacccagcacaagcacaaatatgccaaggcccctatgcgccgggacatct 28023289 Query: 510 gcttggatct 519 |||||||||| Sbjct: 28023290 gcttggatct 28023299
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 208 bits (105), Expect = 1e-50 Identities = 198/229 (86%) Strand = Plus / Plus Query: 214 tgttgtttttccaccttgtccacacgaggacttcgagggtgatgatagtgatcagaagga 273 |||||||||||||||||||||| | ||||| || |||||||| || |||||||| |||| Sbjct: 37542 tgttgtttttccaccttgtccatagcaggacctccagggtgataatggtgatcaggagga 37601 Query: 274 tggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgattc 333 ||||||||||||| ||||||||||||||||||||||| || ||| |||| || ||||||| Sbjct: 37602 tggccaggttgaagccatagccgatcttccacgagttgccggcggctccgaccttgattc 37661 Query: 334 ccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgatacc 393 | | |||||||| | || ||||||||||| |||||||||||||||||||||| |||| Sbjct: 37662 caaggacaatgttgatggctgcaaagaagagcgcaagcctgcctacccaatggtggtacc 37721 Query: 394 agttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 |||||||||||||||| || || ||||| |||| |||| ||||||||| Sbjct: 37722 agttccagtatttccgatattttgagtccttgtgaggccttaggaagaa 37770 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 450 acctggaggatacctagcacaagcacaaatatgccaaggcctctatgtgccggaacatct 509 ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 38429 acctgcaggatacccagcacaagcacaaatatgccaaggcccctatgcgccgggacatct 38488 Query: 510 gcttggatct 519 |||||||||| Sbjct: 38489 gcttggatct 38498
>ref|XM_475892.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Minus Query: 272 gatggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgat 331 |||||| |||||||| || || ||||||||||||||||| | |||| || || | ||| Sbjct: 1029 gatggcgaggttgaagccgtacccgatcttccacgagttgtccccgccgccgacgtggat 970 Query: 332 tcccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgata 391 || | ||| ||||| || || || ||||| || || |||||||| ||| ||||| || Sbjct: 969 accgagcacgatgttgacggcggcgaagaacagcaccagcctgcccgaccagtggtggta 910 Query: 392 ccagttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 ||||||||| || ||||||||||| ||||| |||| ||||| |||||||| Sbjct: 909 ccagttccaatacttccggtacttggagtccgtgttcggccgcaggaagaa 859
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Minus Query: 272 gatggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgat 331 |||||| |||||||| || || ||||||||||||||||| | |||| || || | ||| Sbjct: 44859 gatggcgaggttgaagccgtacccgatcttccacgagttgtccccgccgccgacgtggat 44800 Query: 332 tcccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgata 391 || | ||| ||||| || || || ||||| || || |||||||| ||| ||||| || Sbjct: 44799 accgagcacgatgttgacggcggcgaagaacagcaccagcctgcccgaccagtggtggta 44740 Query: 392 ccagttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 ||||||||| || ||||||||||| ||||| |||| ||||| |||||||| Sbjct: 44739 ccagttccaatacttccggtacttggagtccgtgttcggccgcaggaagaa 44689
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Minus Query: 272 gatggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgat 331 |||||| |||||||| || || ||||||||||||||||| | |||| || || | ||| Sbjct: 27448729 gatggcgaggttgaagccgtacccgatcttccacgagttgtccccgccgccgacgtggat 27448670 Query: 332 tcccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgata 391 || | ||| ||||| || || || ||||| || || |||||||| ||| ||||| || Sbjct: 27448669 accgagcacgatgttgacggcggcgaagaacagcaccagcctgcccgaccagtggtggta 27448610 Query: 392 ccagttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 ||||||||| || ||||||||||| ||||| |||| ||||| |||||||| Sbjct: 27448609 ccagttccaatacttccggtacttggagtccgtgttcggccgcaggaagaa 27448559
>gb|AY112191.1| Zea mays CL50078_1 mRNA sequence Length = 649 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 354 gcaaagaagagaacaagcctgcctacccaatggtgataccagttccagtatttccggtac 413 ||||||||||| | |||||||| ||||| ||||| |||||||||||| | || || ||| Sbjct: 444 gcaaagaagagggcgagcctgccgacccagtggtggtaccagttccagaacttgcgatac 503 Query: 414 ttcgagtctttgttgggcc 432 || ||||| |||||||||| Sbjct: 504 ttggagtccttgttgggcc 522
>dbj|AK058980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D11, full insert sequence Length = 1462 Score = 61.9 bits (31), Expect = 2e-06 Identities = 136/171 (79%) Strand = Plus / Minus Query: 272 gatggccaggttgaaaccatagccgatcttccacgagttaccagcgcctccaactttgat 331 |||||| |||||||| || || ||||||||||||||||| | |||| || || | ||| Sbjct: 1168 gatggcgaggttgaagccgtacccgatcttccacgagttgtccccgccgccgacgtggat 1109 Query: 332 tcccaccacaatgttaactgccgcaaagaagagaacaagcctgcctacccaatggtgata 391 || | ||| ||||| || || || ||||| || || |||||||| ||| ||||| || Sbjct: 1108 accgagcacgatgttgacggcggcgaagaacagcaccagcctgcccgaccagtggtggta 1049 Query: 392 ccagttccagtatttccggtacttcgagtctttgttgggccgtaggaagaa 442 ||||||||| || ||||||||||| ||||| |||| ||||| |||||||| Sbjct: 1048 ccagttccaatacttccggtacttggagtccgtgttcggccgcaggaagaa 998
>gb|AC099308.2| Drosophila melanogaster clone BACR11M14, complete sequence Length = 173097 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 tgcaacagcacaagaagaagaa 126 |||||||||||||||||||||| Sbjct: 172568 tgcaacagcacaagaagaagaa 172547
>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs, STSs and GSSs, complete sequence Length = 176446 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 acaagaagaagaaaacgaatgaaaat 139 |||||||||| ||||||||||||||| Sbjct: 127386 acaagaagaacaaaacgaatgaaaat 127411
>gb|AC011706.14|AC011706 Drosophila melanogaster, chromosome X, region 19E-19E, BAC clone BACR03J18, complete sequence Length = 161614 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tgcaacagcacaagaagaagaa 126 |||||||||||||||||||||| Sbjct: 135762 tgcaacagcacaagaagaagaa 135783
>gb|AE003570.4| Drosophila melanogaster chromosome X, section 69 of 74 of the complete sequence Length = 300051 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tgcaacagcacaagaagaagaa 126 |||||||||||||||||||||| Sbjct: 240127 tgcaacagcacaagaagaagaa 240148
>gb|AC124687.4| Mus musculus BAC clone RP24-447D15 from chromosome 13, complete sequence Length = 176871 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tcagtggttcacaaaacaaga 170 ||||||||||||||||||||| Sbjct: 110003 tcagtggttcacaaaacaaga 109983
>emb|AL035259.1|SPCC1322 S.pombe chromosome III cosmid c1322 Length = 42070 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cttgcagatccttgctacaag 77 ||||||||||||||||||||| Sbjct: 9449 cttgcagatccttgctacaag 9429
>ref|NM_001023123.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC1322.05c), partial mRNA Length = 1839 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 cttgcagatccttgctacaag 77 ||||||||||||||||||||| Sbjct: 1393 cttgcagatccttgctacaag 1413
>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence Length = 179396 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cacaagaagaagaaaacgaa 132 |||||||||||||||||||| Sbjct: 69451 cacaagaagaagaaaacgaa 69470
>ref|NM_115769.1| Arabidopsis thaliana dopamine beta-monooxygenase AT3G59070 mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tgataccagttccagtattt 406 |||||||||||||||||||| Sbjct: 974 tgataccagttccagtattt 955
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acaagaagaagaaaacgaat 133 |||||||||||||||||||| Sbjct: 912832 acaagaagaagaaaacgaat 912851
>gb|AY810664.1| Schistosoma japonicum SJCHGC03674 protein mRNA, partial cds Length = 719 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aagaagaagaaaacgaatga 135 |||||||||||||||||||| Sbjct: 110 aagaagaagaaaacgaatga 129
>ref|XM_572290.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH00960) partial mRNA Length = 1337 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 acaagaagaagaaaacgaat 133 |||||||||||||||||||| Sbjct: 1259 acaagaagaagaaaacgaat 1240
>ref|XM_572291.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH00960) partial mRNA Length = 1506 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 acaagaagaagaaaacgaat 133 |||||||||||||||||||| Sbjct: 1428 acaagaagaagaaaacgaat 1409
>ref|XM_810735.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053511077.60) partial mRNA Length = 744 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aagaagaaaacgaatgaaaa 138 |||||||||||||||||||| Sbjct: 292 aagaagaaaacgaatgaaaa 311
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16 Length = 89517 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tgataccagttccagtattt 406 |||||||||||||||||||| Sbjct: 46772 tgataccagttccagtattt 46791
>emb|AL161511.2|ATCHRIV23 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 23 Length = 197306 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aagaagaaaacgaatgaaaa 138 |||||||||||||||||||| Sbjct: 819 aagaagaaaacgaatgaaaa 838
>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22 Length = 198131 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aagaagaaaacgaatgaaaa 138 |||||||||||||||||||| Sbjct: 193950 aagaagaaaacgaatgaaaa 193969
>emb|AL080252.2|ATT12G13 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project) Length = 91226 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aagaagaaaacgaatgaaaa 138 |||||||||||||||||||| Sbjct: 65047 aagaagaaaacgaatgaaaa 65066
>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE Length = 149149 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ctagtcttgcagatccttgc 71 |||||||||||||||||||| Sbjct: 81929 ctagtcttgcagatccttgc 81948
>gb|AC009758.8| Homo sapiens chromosome 11, clone RP11-101E4, complete sequence Length = 141485 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 attcccaccacaatgttaac 349 |||||||||||||||||||| Sbjct: 37750 attcccaccacaatgttaac 37769
>gb|AC010930.9| Homo sapiens chromosome 11, clone RP11-54I6, complete sequence Length = 148313 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attcccaccacaatgttaac 349 |||||||||||||||||||| Sbjct: 27613 attcccaccacaatgttaac 27594
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 caagaagaagaaaacgaatgaaaattat 142 |||||||||||||| ||| ||||||||| Sbjct: 3375538 caagaagaagaaaaagaaagaaaattat 3375565
>gb|AC084546.1|CBRG30J20 Caenorhabditis briggsae cosmid G30J20, complete sequence Length = 35833 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 caagaagaagaaaacgaatgaaaa 138 ||||||||||||||| |||||||| Sbjct: 12471 caagaagaagaaaacaaatgaaaa 12448
>gb|AC008271.6| Homo sapiens BAC clone RP11-123E16 from 2, complete sequence Length = 111159 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gtttttccaccttgtccaca 237 |||||||||||||||||||| Sbjct: 42343 gtttttccaccttgtccaca 42362
>gb|AC009297.4| Homo sapiens BAC clone RP11-3E14 from 2, complete sequence Length = 91745 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 116 aagaagaagaaaacgaatgaaaattata 143 ||||| |||||| ||||||||||||||| Sbjct: 40503 aagaaaaagaaatcgaatgaaaattata 40530
>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete sequence Length = 304712 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cacaagaagaagaaaacgaa 132 |||||||||||||||||||| Sbjct: 220384 cacaagaagaagaaaacgaa 220403
>gb|AC138594.10| Mus musculus chromosome 7, clone RP24-283N22, complete sequence Length = 167184 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ttcagtggttcacaaaacaa 168 |||||||||||||||||||| Sbjct: 135491 ttcagtggttcacaaaacaa 135472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,575,262 Number of Sequences: 3902068 Number of extensions: 5575262 Number of successful extensions: 94887 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94738 Number of HSP's gapped (non-prelim): 149 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)