ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, comp... 42 0.95
2gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete ... 40 3.8
3emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment ... 40 3.8
4gb|AC023675.4| Drosophila melanogaster 3L BAC RP98-3I22 (Roswell... 40 3.8
5gb|AC010113.6| Drosophila melanogaster 3L BAC RPCI98-10H23 (Rosw... 40 3.8
6gb|AE003558.3| Drosophila melanogaster chromosome 3L, section 27... 40 3.8

>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence
          Length = 237814

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 41    tttcagtatttatagacaaatgtag 65
             |||||||||||||||||| ||||||
Sbjct: 99632 tttcagtatttatagacatatgtag 99608



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>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence
          Length = 132470

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gtatttatagacaaatgtag 65
              ||||||||||||||||||||
Sbjct: 109562 gtatttatagacaaatgtag 109581



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>emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment 7/24
          Length = 287650

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gccagatcgatcagcatcaa 209
              ||||||||||||||||||||
Sbjct: 174194 gccagatcgatcagcatcaa 174213



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>gb|AC023675.4| Drosophila melanogaster 3L BAC RP98-3I22 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 178338

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   tgaaaaagcgccggcaccgc 257
             ||||||||||||||||||||
Sbjct: 17863 tgaaaaagcgccggcaccgc 17882



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>gb|AC010113.6| Drosophila melanogaster 3L BAC RPCI98-10H23 (Roswell Park Cancer
              Institute Drosophila BAC Library) complete sequence
          Length = 182898

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tgaaaaagcgccggcaccgc 257
              ||||||||||||||||||||
Sbjct: 135660 tgaaaaagcgccggcaccgc 135679



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>gb|AE003558.3| Drosophila melanogaster chromosome 3L, section 27 of 83 of the complete
              sequence
          Length = 284442

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tgaaaaagcgccggcaccgc 257
              ||||||||||||||||||||
Sbjct: 122592 tgaaaaagcgccggcaccgc 122611


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,205,929
Number of Sequences: 3902068
Number of extensions: 2205929
Number of successful extensions: 37159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37153
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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